Rh3CG307900

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000030
Physical Location & Seq
Reverse (-)
32229741 .. 32233135
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG307900.1

Sequence Viewer

Length: 2109 bp
ATGGTCGACGGCCTTGAACCTCTGAATGAAACAGTGGTTATACATGGAAAGACTTTCAGCATACATGCATCTGATTTTGAGCGTATTATGGGAGTCAGAGATGGGGGACTTGATGTAGGTTTTAGTGGAGATAGTAACACAGCTGTTGTCGCGCATGTCAAACAAGAGTTAGCTGGTTTAGATGGGAACATAACATTATCCTCGTTGAAGGACGTTGTTCTTCGAAGGGTGGATGTGGACCAAATATTTAGACTGGCCTACGCATTGTACGCAATGTCCGCCTTACTGTGCCCAACCAATAGTGAAGGGGTCGACTACATATTGCTTATGGCCATGATAACAAGCAGGTCGATAGGGGATCTTAATTGGGCTACATATTGCTTCAGCAAGTTGATGGATGGTGTACTCACAAGGTCGCGCAACGACTATGCCATTGGCGGTGCATGTTTCTTGTTCCTCCAAGTGTTTTACTTTGAAGCCGTTGGGACAAGTTTGGGATGGGTTGACAAGACAATCACACCAGTCATATATTGGGGAGTTGACAAGGCCGCAAATTTGGTGCAGTTCGTTAAGAATAATGGAGGCTTTACCTCAGAAAATAACAGAGTCTGGGCACATGAGATGGGTGGCACTTGGATGAAAAAGAATGCTGAGAACTATGAAGGTGGGATAACAGTGGAGGAAACAGTTTTTGCACAGGTGGAGGAGATGTGGTCAGAGATAGTAAGTGTGAAAAATGATGTGCACTATATGAAGGAAAACATAGCTCTTATTGCAAAATTGGGTGAAATGATTGAAGGAGTTCGAACTGAGATTTTGTCAGCTAGGAAGGAAAACGTGACCGCTGCTGCCGCAGAGGTATTCAAACAATACAAACCCCAATCAGATCATATGCTTGGTGTCAGACCTAAAGTCATGGAGAGAGCAATAACAGAGACAAGGAGTAACAGCGCACACTTCAATGGGGGAGAGGATTCTAAATCTAAAGGGGATAATTCACAAGATTCAAGTTGCATGATCTTATATTGCAATAATGTCAATGGACAGACAATACATAATGATAAGGTCAAGGTGAACGGGAACAATGGAAAAGAACTTCACCCAACTCTATCTGATTGTTCAGTGAGCCCCATTGAGGGTCCAAAGGCTATGCGTAGGAGCAGTAAGGAGAAAAATAAAAAGATACCAACTGTGGCACCTAGGCACATTGTTCGTGCACTATTTAAGAAGAGTGCAATTCCGGGTAGAAAGAAGTCACATTTGAAGGGGTGGGGGAAGGGGACTATTGATGCCGGCCCATTCTGTGTCAATCGGGGTACTTCTAAGGACGACATTGATCTTTTGAAGTTTATATTTATGGATATGGAGCAGAATGATTTGGACTACCGTGCCGTAGTTGCGAGTGTCGAAGGAATGCACGTCACAAGGACTGATCTTCAATGCCTCGGTCCAAGGGAGCTTGTCTGCAGCCTTGTTATAAATATATTTGTGGAGTACCTTAACGAAATAGGAAAGGAGGATTGGTATGTCCCAACATACTTCGGGAGAAACTCTATAAAAATGGGAGACAACATGTCAACTCAAGAATGGATTCAACAGACTAAAAGACTAAGTAGGCTTGACAGATTCATTGGCCATTTTGCCAAATGCAGAAGGATTTTTATCCCAATGCACGAGCCAGGAATACAAGAGAAGGATGCACATTGGTATTTATTGGTGGTGCATGTCAGAGATAGGTCTGCAGAGATCCTTGATAGTGCTCCAAATCCTTCCAAAACAATATCCCGGCAAAGAGATGCACGGGCAGCGTTGGACATGCTGGATCGCATTTATGGCGACGCTATGTCGAGACATGCAAATCGGTTGTTTGCTTTCGGAACCCTTCCCTTCAAGGCTGATGGAGCTGGACCTCGACAGAAGAATGATACAGACTGCGGTGTTTTTGTCATTAGGAATATGCAGCGATATGGTACCGATTGGGCTGCTACGTACAATTCGGATATTGAACGTGCAAGTTTGGTGGTCGAGTGTCTAAGGCATCCGAAGAACGAGGTGGGAGACTTGCATGTGACAGTGGACAGATGCTTAGCTCGCATCTCCGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

702

Amino Acids

78.57

Weight (kDa)

7.58

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 526 - 656 4.8e-13 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1478
Acc36I ACCTGC 1 cut(s) 336
Acc65I GGTACC 1 cut(s) 1970
AccB1I GGYRCC 2 cut(s) 1195, 1970
AccI GTMKAC 2 cut(s) 6, 312
AccII CGCG 2 cut(s) 152, 418
AciI CCGC 6 cut(s) 279, 438, 549, 843, 852, 1935
AclWI GGATC 3 cut(s) 366, 1741, 1830
AcoI YGGCCR 2 cut(s) 330, 1633
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 367
AfaI GTAC 6 cut(s) 269, 405, 1318, 1496, 1972, 1991
AfiI CCNNNNNNNGG 2 cut(s) 1135, 1136
AflIII ACRYGT 1 cut(s) 1572
AhdI GACNNNNNGTC 3 cut(s) 911, 1573, 1843
AjiI CACGTC 1 cut(s) 1420
AjnI CCWGG 1 cut(s) 1678
AjuI GAANNNNNNNTTGG 2 cut(s) 1504, 1536
AluBI AGCT 7 cut(s) 143, 173, 767, 824, 1459, 1904, 2090
AluI AGCT 7 cut(s) 143, 173, 767, 824, 1459, 1904, 2090
Alw21I GWGCWC 3 cut(s) 747, 1219, 1762
Alw26I GTCTC 4 cut(s) 929, 1560, 1843, 2052
Alw44I GTGCAC 2 cut(s) 743, 1215
AlwI GGATC 3 cut(s) 366, 1741, 1830
AlwNI CAGNNNCTG 1 cut(s) 609
AoxI GGCC 6 cut(s) 10, 255, 330, 546, 1294, 1633
ApaLI GTGCAC 2 cut(s) 743, 1215
ApeKI GCWGC 6 cut(s) 845, 848, 1467, 1805, 1960, 1982
ApoI RAATTY 1 cut(s) 553
Asp700I GAANNNNTTC 2 cut(s) 801, 1590
Asp718I GGTACC 1 cut(s) 1970
AspA2I CCTAGG 1 cut(s) 1199
AspLEI GCGC 3 cut(s) 154, 420, 953
AspS9I GGNCC 5 cut(s) 238, 1139, 1295, 1448, 1907
AsuC2I CCSGG 3 cut(s) 1242, 1786, 2101
AsuHPI GGTGA 3 cut(s) 797, 1084, 1091
AsuII TTCGAA 2 cut(s) 223, 805
AvaII GGWCC 4 cut(s) 238, 1139, 1448, 1907
AvrII CCTAGG 1 cut(s) 1199
BaeGI GKGCMC 4 cut(s) 293, 616, 747, 1219
BalI TGGCCA 2 cut(s) 332, 1635
BanI GGYRCC 2 cut(s) 1195, 1970
BanII GRGCYC 1 cut(s) 1130
BauI CACGAG 1 cut(s) 1673
Bbv12I GWGCWC 3 cut(s) 747, 1219, 1762
BbvI GCAGC 6 cut(s) 832, 835, 1479, 1817, 1969, 1972
BccI CCATC 7 cut(s) 95, 176, 388, 392, 492, 616, 1892
BceAI ACGGC 3 cut(s) 25, 464, 1376
BcgI CGANNNNNNTGC 4 cut(s) 1193, 1227, 1964, 1998
BciT130I CCWGG 1 cut(s) 1680
BcnI CCSGG 3 cut(s) 1242, 1786, 2101
BcoDI GTCTC 4 cut(s) 929, 1560, 1843, 2052
BfaI CTAG 2 cut(s) 825, 1200
BfmI CTRYAG 2 cut(s) 1465, 1740
BfuAI ACCTGC 1 cut(s) 336
BisI GCNGC 8 cut(s) 549, 846, 849, 852, 1468, 1806, 1961, 1983
BlnI CCTAGG 1 cut(s) 1199
BlpI GCTNAGC 1 cut(s) 2086
BlsI GCNGC 8 cut(s) 550, 847, 850, 853, 1469, 1807, 1962, 1984
Bme1390I CCNGG 4 cut(s) 1242, 1680, 1786, 2101
Bme18I GGWCC 4 cut(s) 238, 1139, 1448, 1907
BmeRI GACNNNNNGTC 3 cut(s) 911, 1573, 1843
BmgBI CACGTC 1 cut(s) 1420
BmgT120I GGNCC 5 cut(s) 238, 1139, 1295, 1448, 1907
BmiI GGNNCC 4 cut(s) 1140, 1197, 1879, 1972
BmrFI CCNGG 4 cut(s) 1242, 1680, 1786, 2101
BmsI GCATC 7 cut(s) 77, 1279, 1687, 1786, 2047, 2072, 2103
Bpu1102I GCTNAGC 1 cut(s) 2086
Bpu14I TTCGAA 2 cut(s) 223, 805
BpuEI CTTGAG 1 cut(s) 1566
BpuMI CCSGG 3 cut(s) 1242, 1786, 2101
BsaAI YACGTR 1 cut(s) 1989
BsaBI GATNNNNATC 1 cut(s) 1661
BsaJI CCNNGG 3 cut(s) 1199, 1444, 1451
BsaXI ACNNNNNCTCC 6 cut(s) 695, 698, 725, 728, 1508, 1538
Bsc4I CCNNNNNNNGG 2 cut(s) 1135, 1136
Bse118I RCCGGY 1 cut(s) 1292
Bse1I ACTGG 2 cut(s) 258, 521
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 1661
BseBI CCWGG 1 cut(s) 1680
BseDI CCNNGG 3 cut(s) 1199, 1444, 1451
BseGI GGATG 6 cut(s) 238, 403, 503, 642, 1702, 2038
BseJI GATNNNNATC 1 cut(s) 1661
BseLI CCNNNNNNNGG 2 cut(s) 1135, 1136
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 606, 642, 801
BseNI ACTGG 2 cut(s) 258, 521
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 4 cut(s) 293, 616, 747, 1219
BseXI GCAGC 6 cut(s) 832, 835, 1479, 1817, 1969, 1972
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 2 cut(s) 152, 418
BshFI GGCC 6 cut(s) 12, 257, 332, 548, 1296, 1635
BshNI GGYRCC 2 cut(s) 1195, 1970
BsiHKAI GWGCWC 3 cut(s) 747, 1219, 1762
BsiSI CCGG 4 cut(s) 1241, 1293, 1786, 2100
BslFI GGGAC 4 cut(s) 120, 499, 1294, 1514
BslI CCNNNNNNNGG 2 cut(s) 1135, 1136
BsmAI GTCTC 4 cut(s) 929, 1560, 1843, 2052
BsmFI GGGAC 4 cut(s) 120, 499, 1294, 1514
BsmI GAATGC 2 cut(s) 652, 1419
BsnI GGCC 6 cut(s) 12, 257, 332, 548, 1296, 1635
Bsp119I TTCGAA 2 cut(s) 223, 805
Bsp1286I GDGCHC 6 cut(s) 293, 616, 747, 1130, 1219, 1762
Bsp143I GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
Bsp1720I GCTNAGC 1 cut(s) 2086
BspACI CCGC 6 cut(s) 279, 438, 549, 843, 852, 1935
BspANI GGCC 6 cut(s) 12, 257, 332, 548, 1296, 1635
BspCNI CTCAG 3 cut(s) 605, 643, 802
BspFNI CGCG 2 cut(s) 152, 418
BspLI GGNNCC 4 cut(s) 1140, 1197, 1879, 1972
BspMAI CTGCAG 2 cut(s) 1469, 1744
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 3 cut(s) 366, 1741, 1830
BspT104I TTCGAA 2 cut(s) 223, 805
BspT107I GGYRCC 2 cut(s) 1195, 1970
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 1292
BsrI ACTGG 2 cut(s) 258, 521
BssAI RCCGGY 1 cut(s) 1292
BssECI CCNNGG 3 cut(s) 1199, 1444, 1451
BssMI GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
BssSI CACGAG 1 cut(s) 1673
BssT1I CCWWGG 2 cut(s) 1199, 1451
Bst2BI CACGAG 1 cut(s) 1673
Bst2UI CCWGG 1 cut(s) 1680
Bst4CI ACNGT 7 cut(s) 34, 288, 676, 688, 1192, 1388, 2074
Bst6I CTCTTC 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 1989
BstBI TTCGAA 2 cut(s) 223, 805
BstC8I GCNNGC 2 cut(s) 1294, 2092
BstDEI CTNAG 7 cut(s) 592, 651, 810, 1323, 1610, 2033, 2086
BstF5I GGATG 6 cut(s) 238, 403, 503, 642, 1702, 2038
BstFNI CGCG 2 cut(s) 152, 418
BstHHI GCGC 3 cut(s) 154, 420, 953
BstKTI GATC 7 cut(s) 361, 889, 1020, 1339, 1435, 1749, 1825
BstMAI GTCTC 4 cut(s) 929, 1560, 1843, 2052
BstMBI GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
BstNI CCWGG 1 cut(s) 1680
BstNSI RCATGY 8 cut(s) 68, 158, 447, 1576, 1727, 1819, 1856, 2069
BstSCI CCNGG 4 cut(s) 1240, 1678, 1784, 2099
BstSFI CTRYAG 2 cut(s) 1465, 1740
BstSLI GKGCMC 4 cut(s) 293, 616, 747, 1219
BstSNI TACGTA 1 cut(s) 1989
BstUI CGCG 2 cut(s) 152, 418
BstV1I GCAGC 6 cut(s) 832, 835, 1479, 1817, 1969, 1972
BstX2I RGATCY 2 cut(s) 358, 1746
BstYI RGATCY 2 cut(s) 358, 1746
BsuRI GGCC 6 cut(s) 12, 257, 332, 548, 1296, 1635
BtrI CACGTC 1 cut(s) 1420
BtsCI GGATG 6 cut(s) 238, 403, 503, 642, 1702, 2038
BtsIMutI CAGTG 4 cut(s) 39, 681, 1128, 2079
BveI ACCTGC 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 1294, 2092
CaiI CAGNNNCTG 1 cut(s) 609
CfoI GCGC 3 cut(s) 154, 420, 953
Cfr10I RCCGGY 1 cut(s) 1292
Cfr13I GGNCC 5 cut(s) 238, 1139, 1295, 1448, 1907
CseI GACGC 1 cut(s) 1847
Csp6I GTAC 6 cut(s) 268, 404, 1317, 1495, 1971, 1990
CspCI CAANNNNNGTGG 2 cut(s) 2001, 2036
CviQI GTAC 6 cut(s) 268, 404, 1317, 1495, 1971, 1990
DdeI CTNAG 7 cut(s) 592, 651, 810, 1323, 1610, 2033, 2086
DpnI GATC 7 cut(s) 360, 888, 1019, 1338, 1434, 1748, 1824
DpnII GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
DriI GACNNNNNGTC 3 cut(s) 911, 1573, 1843
EaeI YGGCCR 2 cut(s) 330, 1633
Eam1104I CTCTTC 1 cut(s) 1223
Eam1105I GACNNNNNGTC 3 cut(s) 911, 1573, 1843
EarI CTCTTC 1 cut(s) 1223
EciI GGCGGA 1 cut(s) 268
Eco105I TACGTA 1 cut(s) 1989
Eco130I CCWWGG 2 cut(s) 1199, 1451
Eco24I GRGCYC 1 cut(s) 1130
Eco47I GGWCC 4 cut(s) 238, 1139, 1448, 1907
Eco57I CTGAAG 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 1678
EcoT14I CCWWGG 2 cut(s) 1199, 1451
EcoT22I ATGCAT 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 1130
ErhI CCWWGG 2 cut(s) 1199, 1451
FaqI GGGAC 4 cut(s) 120, 499, 1294, 1514
FauNDI CATATG 1 cut(s) 891
FblI GTMKAC 2 cut(s) 6, 312
Fnu4HI GCNGC 8 cut(s) 549, 846, 849, 852, 1468, 1806, 1961, 1983
FokI GGATG 6 cut(s) 245, 410, 510, 649, 1709, 2025
FriOI GRGCYC 1 cut(s) 1130
Fsp4HI GCNGC 8 cut(s) 549, 846, 849, 852, 1468, 1806, 1961, 1983
FspBI CTAG 2 cut(s) 825, 1200
GlaI GCGC 3 cut(s) 153, 419, 952
GluI GCNGC 8 cut(s) 549, 846, 849, 852, 1468, 1806, 1961, 1983
HaeIII GGCC 6 cut(s) 12, 257, 332, 548, 1296, 1635
HapII CCGG 4 cut(s) 1241, 1293, 1786, 2100
HgaI GACGC 1 cut(s) 1847
HhaI GCGC 3 cut(s) 154, 420, 953
Hin6I GCGC 3 cut(s) 152, 418, 951
HinP1I GCGC 3 cut(s) 152, 418, 951
HincII GTYRAC 5 cut(s) 7, 313, 505, 541, 1578
HindII GTYRAC 5 cut(s) 7, 313, 505, 541, 1578
HinfI GANTC 6 cut(s) 93, 606, 974, 1004, 1591, 1626
HpaII CCGG 4 cut(s) 1241, 1293, 1786, 2100
HphI GGTGA 3 cut(s) 797, 1084, 1091
Hpy188III TCNNGA 3 cut(s) 1543, 1583, 1848
Hpy99I CGWCG 2 cut(s) 11, 1841
HpyCH4III ACNGT 7 cut(s) 34, 288, 676, 688, 1192, 1388, 2074
HpyCH4IV ACGT 5 cut(s) 213, 837, 1419, 1988, 2008
HpyF3I CTNAG 7 cut(s) 592, 651, 810, 1323, 1610, 2033, 2086
HpySE526I ACGT 5 cut(s) 213, 837, 1419, 1988, 2008
HspAI GCGC 3 cut(s) 152, 418, 951
KpnI GGTACC 1 cut(s) 1974
KroI GCCGGC 1 cut(s) 1292
KroNI GCCGGC 1 cut(s) 1294
Kzo9I GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
LmnI GCTCC 5 cut(s) 1158, 1366, 1456, 1765, 1901
Lsp1109I GCAGC 6 cut(s) 832, 835, 1479, 1817, 1969, 1972
LweI GCATC 7 cut(s) 77, 1279, 1687, 1786, 2047, 2072, 2103
MaeI CTAG 2 cut(s) 825, 1200
MaeII ACGT 5 cut(s) 213, 837, 1419, 1988, 2008
MaeIII GTNAC 6 cut(s) 134, 838, 944, 1254, 1420, 2068
MalI GATC 7 cut(s) 360, 888, 1019, 1338, 1434, 1748, 1824
MboI GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
MboII GAAGA 5 cut(s) 212, 1240, 1427, 1930, 2056
MflI RGATCY 2 cut(s) 358, 1746
MhlI GDGCHC 6 cut(s) 293, 616, 747, 1130, 1219, 1762
MlsI TGGCCA 2 cut(s) 332, 1635
MluCI AATT 6 cut(s) 364, 553, 779, 994, 1236, 1993
MluNI TGGCCA 2 cut(s) 332, 1635
MlyI GAGTC 2 cut(s) 102, 615
MmeI TCCRAC 1 cut(s) 1791
Mox20I TGGCCA 2 cut(s) 332, 1635
Mph1103I ATGCAT 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 1292
MroXI GAANNNNTTC 2 cut(s) 801, 1590
MscI TGGCCA 2 cut(s) 332, 1635
MseI TTAA 4 cut(s) 363, 570, 1224, 1500
MslI CAYNNNNRTG 2 cut(s) 635, 960
Msp20I TGGCCA 2 cut(s) 332, 1635
MspA1I CMGCKG 2 cut(s) 143, 845
MspI CCGG 4 cut(s) 1241, 1293, 1786, 2100
MspR9I CCNGG 4 cut(s) 1242, 1680, 1786, 2101
Mva1269I GAATGC 2 cut(s) 652, 1419
MvaI CCWGG 1 cut(s) 1680
MvnI CGCG 2 cut(s) 152, 418
NaeI GCCGGC 1 cut(s) 1294
NciI CCSGG 3 cut(s) 1242, 1786, 2101
NdeI CATATG 1 cut(s) 891
NdeII GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
NgoMIV GCCGGC 1 cut(s) 1292
NlaIV GGNNCC 4 cut(s) 1140, 1197, 1879, 1972
NmuCI GTSAC 4 cut(s) 838, 1254, 1420, 2068
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 8 cut(s) 68, 158, 447, 1576, 1727, 1819, 1856, 2069
NspV TTCGAA 2 cut(s) 223, 805
PciI ACATGT 1 cut(s) 1572
PctI GAATGC 2 cut(s) 652, 1419
PdiI GCCGGC 1 cut(s) 1294
PdmI GAANNNNTTC 2 cut(s) 801, 1590
PfeI GAWTC 4 cut(s) 974, 1004, 1591, 1626
PfoI TCCNGGA 1 cut(s) 2099
PkrI GCNGC 8 cut(s) 550, 847, 850, 853, 1469, 1807, 1962, 1984
PleI GAGTC 2 cut(s) 101, 614
PpsI GAGTC 2 cut(s) 101, 614
Ppu21I YACGTR 1 cut(s) 1989
PscI ACATGT 1 cut(s) 1572
PsiI TTATAA 1 cut(s) 1478
Psp6I CCWGG 1 cut(s) 1678
PspGI CCWGG 1 cut(s) 1678
PspN4I GGNNCC 4 cut(s) 1140, 1197, 1879, 1972
PspPI GGNCC 5 cut(s) 238, 1139, 1295, 1448, 1907
PstI CTGCAG 2 cut(s) 1469, 1744
PstNI CAGNNNCTG 1 cut(s) 609
PsuI RGATCY 2 cut(s) 358, 1746
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 6 cut(s) 269, 405, 1318, 1496, 1972, 1991
RsaNI GTAC 6 cut(s) 268, 404, 1317, 1495, 1971, 1990
RseI CAYNNNNRTG 2 cut(s) 635, 960
SalI GTCGAC 2 cut(s) 5, 311
SaqAI TTAA 4 cut(s) 363, 570, 1224, 1500
SatI GCNGC 8 cut(s) 549, 846, 849, 852, 1468, 1806, 1961, 1983
Sau3AI GATC 7 cut(s) 358, 886, 1017, 1336, 1432, 1746, 1822
Sau96I GGNCC 5 cut(s) 238, 1139, 1295, 1448, 1907
SchI GAGTC 2 cut(s) 102, 615
ScrFI CCNGG 4 cut(s) 1242, 1680, 1786, 2101
SduI GDGCHC 6 cut(s) 293, 616, 747, 1130, 1219, 1762
SfaNI GCATC 7 cut(s) 77, 1279, 1687, 1786, 2047, 2072, 2103
SfcI CTRYAG 2 cut(s) 1465, 1740
SfuI TTCGAA 2 cut(s) 223, 805
SinI GGWCC 4 cut(s) 238, 1139, 1448, 1907
SmiMI CAYNNNNRTG 2 cut(s) 635, 960
SmlI CTYRAG 1 cut(s) 1581
SmoI CTYRAG 1 cut(s) 1581
SnaBI TACGTA 1 cut(s) 1989
Sse9I AATT 6 cut(s) 364, 553, 779, 994, 1236, 1993
SsiI CCGC 6 cut(s) 279, 438, 549, 843, 852, 1935
SspI AATATT 1 cut(s) 246
SspMI CTAG 2 cut(s) 825, 1200
StyD4I CCNGG 4 cut(s) 1240, 1678, 1784, 2099
StyI CCWWGG 2 cut(s) 1199, 1451
TaaI ACNGT 7 cut(s) 34, 288, 676, 688, 1192, 1388, 2074
TaiI ACGT 5 cut(s) 216, 840, 1422, 1991, 2011
TaqI TCGA 9 cut(s) 6, 223, 312, 350, 805, 1407, 1847, 1912, 2025
TaqII GACCGA 1 cut(s) 1436
TasI AATT 6 cut(s) 364, 553, 779, 994, 1236, 1993
TatI WGTACW 1 cut(s) 403
TauI GCSGC 2 cut(s) 551, 854
TfiI GAWTC 4 cut(s) 974, 1004, 1591, 1626
Tru1I TTAA 4 cut(s) 363, 570, 1224, 1500
Tru9I TTAA 4 cut(s) 363, 570, 1224, 1500
TscAI CASTG 4 cut(s) 39, 681, 1128, 2079
TseFI GTSAC 4 cut(s) 838, 1254, 1420, 2068
TseI GCWGC 6 cut(s) 845, 848, 1467, 1805, 1960, 1982
Tsp45I GTSAC 4 cut(s) 838, 1254, 1420, 2068
TspDTI ATGAA 5 cut(s) 42, 653, 675, 767, 1618
TspRI CASTG 4 cut(s) 39, 681, 1128, 2079
VneI GTGCAC 2 cut(s) 743, 1215
VpaK11BI GGWCC 4 cut(s) 238, 1139, 1448, 1907
XapI RAATTY 1 cut(s) 553
XceI RCATGY 8 cut(s) 68, 158, 447, 1576, 1727, 1819, 1856, 2069
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XmaJI CCTAGG 1 cut(s) 1199
XmiI GTMKAC 2 cut(s) 6, 312
XmnI GAANNNNTTC 2 cut(s) 801, 1590
XspI CTAG 2 cut(s) 825, 1200
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.