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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 791 |
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 2 cut(s) | 203, 698 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 4 cut(s) | 107, 501, 668, 898 |
| AcuI | CTGAAG | 1 cut(s) | 264 |
| AfaI | GTAC | 2 cut(s) | 211, 381 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 826, 864 |
| AgsI | TTSAA | 7 cut(s) | 221, 285, 344, 592, 648, 667, 964 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 838 |
| AjnI | CCWGG | 1 cut(s) | 707 |
| AleI | CACNNNNGTG | 1 cut(s) | 933 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 265, 297 |
| AluBI | AGCT | 6 cut(s) | 251, 277, 476, 515, 812, 984 |
| AluI | AGCT | 6 cut(s) | 251, 277, 476, 515, 812, 984 |
| Alw21I | GWGCWC | 1 cut(s) | 974 |
| Alw26I | GTCTC | 3 cut(s) | 164, 308, 681 |
| AlwI | GGATC | 2 cut(s) | 203, 698 |
| AoxI | GGCC | 2 cut(s) | 406, 484 |
| ApeKI | GCWGC | 2 cut(s) | 812, 957 |
| ApoI | RAATTY | 4 cut(s) | 107, 501, 668, 898 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 643 |
| AspLEI | GCGC | 1 cut(s) | 792 |
| AsuHPI | GGTGA | 3 cut(s) | 247, 565, 764 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BanII | GRGCYC | 1 cut(s) | 306 |
| BauI | CACGAG | 1 cut(s) | 521 |
| Bbv12I | GWGCWC | 1 cut(s) | 974 |
| BbvI | GCAGC | 2 cut(s) | 799, 944 |
| BccI | CCATC | 5 cut(s) | 46, 77, 182, 398, 476 |
| BciT130I | CCWGG | 1 cut(s) | 709 |
| BclI | TGATCA | 1 cut(s) | 532 |
| BcoDI | GTCTC | 3 cut(s) | 164, 308, 681 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BfmI | CTRYAG | 2 cut(s) | 491, 941 |
| BisI | GCNGC | 2 cut(s) | 813, 958 |
| BlsI | GCNGC | 2 cut(s) | 814, 959 |
| Bme1390I | CCNGG | 1 cut(s) | 709 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 838 |
| BmiI | GGNNCC | 1 cut(s) | 303 |
| BmrFI | CCNGG | 1 cut(s) | 709 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 818, 850 |
| BsaJI | CCNNGG | 3 cut(s) | 390, 707, 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 826, 864 |
| Bse3DI | GCAATG | 1 cut(s) | 767 |
| BseBI | CCWGG | 1 cut(s) | 709 |
| BseDI | CCNNGG | 3 cut(s) | 390, 707, 708 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 826, 864 |
| BseMI | GCAATG | 1 cut(s) | 767 |
| BseRI | GAGGAG | 1 cut(s) | 842 |
| BseXI | GCAGC | 2 cut(s) | 799, 944 |
| BshFI | GGCC | 2 cut(s) | 408, 486 |
| BsiHKAI | GWGCWC | 1 cut(s) | 974 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 826, 864 |
| BsmAI | GTCTC | 3 cut(s) | 164, 308, 681 |
| BsnI | GGCC | 2 cut(s) | 408, 486 |
| Bsp1286I | GDGCHC | 2 cut(s) | 306, 974 |
| Bsp1407I | TGTACA | 1 cut(s) | 209 |
| Bsp143I | GATC | 4 cut(s) | 128, 195, 532, 703 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 2 cut(s) | 408, 486 |
| BspLI | GGNNCC | 1 cut(s) | 303 |
| BspMAI | CTGCAG | 1 cut(s) | 495 |
| BspPI | GGATC | 2 cut(s) | 203, 698 |
| BsrDI | GCAATG | 1 cut(s) | 767 |
| BsrGI | TGTACA | 1 cut(s) | 209 |
| BssECI | CCNNGG | 3 cut(s) | 390, 707, 708 |
| BssMI | GATC | 4 cut(s) | 128, 195, 532, 703 |
| BssSI | CACGAG | 1 cut(s) | 521 |
| BssT1I | CCWWGG | 1 cut(s) | 390 |
| Bst2BI | CACGAG | 1 cut(s) | 521 |
| Bst2UI | CCWGG | 1 cut(s) | 709 |
| Bst4CI | ACNGT | 4 cut(s) | 24, 92, 209, 348 |
| Bst6I | CTCTTC | 1 cut(s) | 92 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 914 |
| BstAUI | TGTACA | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 1 cut(s) | 982 |
| BstDEI | CTNAG | 3 cut(s) | 432, 767, 975 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 824 |
| BstHHI | GCGC | 1 cut(s) | 792 |
| BstKTI | GATC | 4 cut(s) | 131, 198, 535, 706 |
| BstMAI | GTCTC | 3 cut(s) | 164, 308, 681 |
| BstMBI | GATC | 4 cut(s) | 128, 195, 532, 703 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 914 |
| BstNI | CCWGG | 1 cut(s) | 709 |
| BstNSI | RCATGY | 1 cut(s) | 908 |
| BstSCI | CCNGG | 1 cut(s) | 707 |
| BstSFI | CTRYAG | 2 cut(s) | 491, 941 |
| BstV1I | GCAGC | 2 cut(s) | 799, 944 |
| BsuRI | GGCC | 2 cut(s) | 408, 486 |
| BtgZI | GCGATG | 1 cut(s) | 938 |
| BtsIMutI | CAGTG | 2 cut(s) | 205, 212 |
| Cac8I | GCNNGC | 1 cut(s) | 982 |
| CfoI | GCGC | 1 cut(s) | 792 |
| CseI | GACGC | 1 cut(s) | 906 |
| Csp6I | GTAC | 2 cut(s) | 210, 380 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 844, 879 |
| CviAII | CATG | 6 cut(s) | 310, 361, 462, 843, 887, 905 |
| CviQI | GTAC | 2 cut(s) | 210, 380 |
| DdeI | CTNAG | 3 cut(s) | 432, 767, 975 |
| DpnI | GATC | 4 cut(s) | 130, 197, 534, 705 |
| DpnII | GATC | 4 cut(s) | 128, 195, 532, 703 |
| DriI | GACNNNNNGTC | 1 cut(s) | 838 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 1 cut(s) | 92 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 838 |
| EarI | CTCTTC | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 390 |
| Eco24I | GRGCYC | 1 cut(s) | 306 |
| Eco57I | CTGAAG | 1 cut(s) | 264 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 824 |
| EcoRI | GAATTC | 1 cut(s) | 898 |
| EcoRII | CCWGG | 1 cut(s) | 707 |
| EcoT14I | CCWWGG | 1 cut(s) | 390 |
| EcoT22I | ATGCAT | 1 cut(s) | 910 |
| EcoT38I | GRGCYC | 1 cut(s) | 306 |
| ErhI | CCWWGG | 1 cut(s) | 390 |
| FaeI | CATG | 6 cut(s) | 313, 364, 465, 846, 890, 908 |
| FatI | CATG | 6 cut(s) | 309, 360, 461, 842, 886, 904 |
| FauNDI | CATATG | 1 cut(s) | 537 |
| FbaI | TGATCA | 1 cut(s) | 532 |
| Fnu4HI | GCNGC | 2 cut(s) | 813, 958 |
| FriOI | GRGCYC | 1 cut(s) | 306 |
| Fsp4HI | GCNGC | 2 cut(s) | 813, 958 |
| FspBI | CTAG | 1 cut(s) | 383 |
| FspI | TGCGCA | 1 cut(s) | 791 |
| GlaI | GCGC | 1 cut(s) | 791 |
| GluI | GCNGC | 2 cut(s) | 813, 958 |
| HaeIII | GGCC | 2 cut(s) | 408, 486 |
| HgaI | GACGC | 1 cut(s) | 906 |
| HhaI | GCGC | 1 cut(s) | 792 |
| Hin1II | CATG | 6 cut(s) | 313, 364, 465, 846, 890, 908 |
| Hin6I | GCGC | 1 cut(s) | 790 |
| HinP1I | GCGC | 1 cut(s) | 790 |
| HincII | GTYRAC | 1 cut(s) | 921 |
| HindII | GTYRAC | 1 cut(s) | 921 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HinfI | GANTC | 5 cut(s) | 386, 560, 596, 653, 833 |
| HphI | GGTGA | 3 cut(s) | 247, 565, 764 |
| Hpy166II | GTNNAC | 4 cut(s) | 212, 420, 755, 921 |
| Hpy188I | TCNGA | 5 cut(s) | 141, 200, 244, 358, 508 |
| Hpy8I | GTNNAC | 4 cut(s) | 212, 420, 755, 921 |
| HpyAV | CCTTC | 6 cut(s) | 215, 358, 497, 520, 544, 595 |
| HpyCH4III | ACNGT | 4 cut(s) | 24, 92, 209, 348 |
| HpyCH4V | TGCA | 6 cut(s) | 205, 465, 493, 760, 815, 908 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 914 |
| HpyF3I | CTNAG | 3 cut(s) | 432, 767, 975 |
| Hsp92II | CATG | 6 cut(s) | 313, 364, 465, 846, 890, 908 |
| HspAI | GCGC | 1 cut(s) | 790 |
| Ksp22I | TGATCA | 1 cut(s) | 532 |
| Kzo9I | GATC | 4 cut(s) | 128, 195, 532, 703 |
| LmnI | GCTCC | 3 cut(s) | 60, 301, 520 |
| LpnPI | CCDG | 6 cut(s) | 218, 667, 694, 721, 833, 871 |
| Lsp1109I | GCAGC | 2 cut(s) | 799, 944 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MaeIII | GTNAC | 1 cut(s) | 553 |
| MalI | GATC | 4 cut(s) | 130, 197, 534, 705 |
| MboI | GATC | 4 cut(s) | 128, 195, 532, 703 |
| MboII | GAAGA | 4 cut(s) | 109, 114, 725, 841 |
| MhlI | GDGCHC | 2 cut(s) | 306, 974 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 6 cut(s) | 107, 339, 412, 501, 668, 898 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| MlyI | GAGTC | 3 cut(s) | 590, 647, 827 |
| MnlI | CCTC | 5 cut(s) | 10, 388, 820, 823, 939 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| Mph1103I | ATGCAT | 1 cut(s) | 910 |
| MroXI | GAANNNNTTC | 1 cut(s) | 643 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| MseI | TTAA | 1 cut(s) | 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 933 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MspA1I | CMGCKG | 1 cut(s) | 812 |
| MspR9I | CCNGG | 1 cut(s) | 709 |
| MvaI | CCWGG | 1 cut(s) | 709 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 914 |
| NdeI | CATATG | 1 cut(s) | 537 |
| NdeII | GATC | 4 cut(s) | 128, 195, 532, 703 |
| NlaIII | CATG | 6 cut(s) | 313, 364, 465, 846, 890, 908 |
| NlaIV | GGNNCC | 1 cut(s) | 303 |
| NmuCI | GTSAC | 1 cut(s) | 553 |
| NsbI | TGCGCA | 1 cut(s) | 791 |
| NsiI | ATGCAT | 1 cut(s) | 910 |
| NspI | RCATGY | 1 cut(s) | 908 |
| OliI | CACNNNNGTG | 1 cut(s) | 933 |
| PasI | CCCWGGG | 1 cut(s) | 708 |
| PdmI | GAANNNNTTC | 1 cut(s) | 643 |
| PfeI | GAWTC | 2 cut(s) | 386, 560 |
| PkrI | GCNGC | 2 cut(s) | 814, 959 |
| PleI | GAGTC | 3 cut(s) | 590, 647, 827 |
| PpsI | GAGTC | 3 cut(s) | 590, 647, 827 |
| Psp6I | CCWGG | 1 cut(s) | 707 |
| PspGI | CCWGG | 1 cut(s) | 707 |
| PspN4I | GGNNCC | 1 cut(s) | 303 |
| PstI | CTGCAG | 1 cut(s) | 495 |
| PvuII | CAGCTG | 1 cut(s) | 812 |
| RsaI | GTAC | 2 cut(s) | 211, 381 |
| RsaNI | GTAC | 2 cut(s) | 210, 380 |
| RseI | CAYNNNNRTG | 1 cut(s) | 933 |
| SaqAI | TTAA | 1 cut(s) | 606 |
| SatI | GCNGC | 2 cut(s) | 813, 958 |
| Sau3AI | GATC | 4 cut(s) | 128, 195, 532, 703 |
| SchI | GAGTC | 3 cut(s) | 590, 647, 827 |
| ScrFI | CCNGG | 1 cut(s) | 709 |
| SduI | GDGCHC | 2 cut(s) | 306, 974 |
| SfcI | CTRYAG | 2 cut(s) | 491, 941 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 933 |
| Sse9I | AATT | 6 cut(s) | 107, 339, 412, 501, 668, 898 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspMI | CTAG | 1 cut(s) | 383 |
| StyD4I | CCNGG | 1 cut(s) | 707 |
| StyI | CCWWGG | 1 cut(s) | 390 |
| TaaI | ACNGT | 4 cut(s) | 24, 92, 209, 348 |
| TaqI | TCGA | 2 cut(s) | 599, 896 |
| TasI | AATT | 6 cut(s) | 107, 339, 412, 501, 668, 898 |
| TatI | WGTACW | 1 cut(s) | 209 |
| TfiI | GAWTC | 2 cut(s) | 386, 560 |
| Tru1I | TTAA | 1 cut(s) | 606 |
| Tru9I | TTAA | 1 cut(s) | 606 |
| TscAI | CASTG | 2 cut(s) | 212, 219 |
| TseFI | GTSAC | 1 cut(s) | 553 |
| TseI | GCWGC | 2 cut(s) | 812, 957 |
| Tsp45I | GTSAC | 1 cut(s) | 553 |
| TspDTI | ATGAA | 4 cut(s) | 377, 512, 882, 941 |
| TspGWI | ACGGA | 3 cut(s) | 45, 618, 708 |
| TspRI | CASTG | 2 cut(s) | 212, 219 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 824 |
| XapI | RAATTY | 4 cut(s) | 107, 501, 668, 898 |
| XceI | RCATGY | 1 cut(s) | 908 |
| XmnI | GAANNNNTTC | 1 cut(s) | 643 |
| XspI | CTAG | 1 cut(s) | 383 |
| Zsp2I | ATGCAT | 1 cut(s) | 910 |