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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 535 |
| AccI | GTMKAC | 2 cut(s) | 201, 507 |
| AccII | CGCG | 1 cut(s) | 347 |
| AciI | CCGC | 2 cut(s) | 338, 474 |
| AcoI | YGGCCR | 1 cut(s) | 529 |
| AcuI | CTGAAG | 1 cut(s) | 134 |
| AfaI | GTAC | 1 cut(s) | 464 |
| AgsI | TTSAA | 3 cut(s) | 25, 212, 403 |
| AjnI | CCWGG | 1 cut(s) | 180 |
| AluBI | AGCT | 3 cut(s) | 122, 172, 368 |
| AluI | AGCT | 3 cut(s) | 122, 172, 368 |
| Alw26I | GTCTC | 1 cut(s) | 288 |
| AoxI | GGCC | 5 cut(s) | 12, 96, 205, 450, 529 |
| ApaI | GGGCCC | 1 cut(s) | 100 |
| AspLEI | GCGC | 1 cut(s) | 349 |
| AspS9I | GGNCC | 3 cut(s) | 96, 97, 433 |
| AsuC2I | CCSGG | 1 cut(s) | 95 |
| AsuII | TTCGAA | 1 cut(s) | 418 |
| AvaII | GGWCC | 1 cut(s) | 433 |
| BaeGI | GKGCMC | 2 cut(s) | 100, 488 |
| BalI | TGGCCA | 1 cut(s) | 531 |
| BanII | GRGCYC | 2 cut(s) | 64, 100 |
| BbvCI | CCTCAGC | 1 cut(s) | 168 |
| BccI | CCATC | 5 cut(s) | 23, 113, 127, 190, 371 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BciT130I | CCWGG | 1 cut(s) | 182 |
| BcnI | CCSGG | 1 cut(s) | 95 |
| BcoDI | GTCTC | 1 cut(s) | 288 |
| BfuAI | ACCTGC | 1 cut(s) | 535 |
| Bme1390I | CCNGG | 2 cut(s) | 95, 182 |
| Bme18I | GGWCC | 1 cut(s) | 433 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 97, 433 |
| BmiI | GGNNCC | 1 cut(s) | 98 |
| BmrFI | CCNGG | 2 cut(s) | 95, 182 |
| BmsI | GCATC | 3 cut(s) | 53, 152, 272 |
| Bpu10I | CCTNAGC | 1 cut(s) | 168 |
| Bpu14I | TTCGAA | 1 cut(s) | 418 |
| BpuMI | CCSGG | 1 cut(s) | 95 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| Bse3DI | GCAATG | 2 cut(s) | 41, 474 |
| BseBI | CCWGG | 1 cut(s) | 182 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseGI | GGATG | 2 cut(s) | 167, 433 |
| BseMI | GCAATG | 2 cut(s) | 41, 474 |
| BseMII | CTCAG | 2 cut(s) | 77, 182 |
| BseSI | GKGCMC | 2 cut(s) | 100, 488 |
| Bsh1236I | CGCG | 1 cut(s) | 347 |
| BshFI | GGCC | 5 cut(s) | 14, 98, 207, 452, 531 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| BsiSI | CCGG | 1 cut(s) | 94 |
| BslFI | GGGAC | 1 cut(s) | 315 |
| BsmAI | GTCTC | 1 cut(s) | 288 |
| BsmBI | CGTCTC | 1 cut(s) | 288 |
| BsmFI | GGGAC | 1 cut(s) | 315 |
| BsnI | GGCC | 5 cut(s) | 14, 98, 207, 452, 531 |
| Bsp119I | TTCGAA | 1 cut(s) | 418 |
| Bsp120I | GGGCCC | 1 cut(s) | 96 |
| Bsp1286I | GDGCHC | 3 cut(s) | 64, 100, 488 |
| Bsp143I | GATC | 1 cut(s) | 557 |
| BspACI | CCGC | 2 cut(s) | 338, 474 |
| BspANI | GGCC | 5 cut(s) | 14, 98, 207, 452, 531 |
| BspCNI | CTCAG | 2 cut(s) | 76, 181 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspFNI | CGCG | 1 cut(s) | 347 |
| BspLI | GGNNCC | 1 cut(s) | 98 |
| BspMI | ACCTGC | 1 cut(s) | 535 |
| BspT104I | TTCGAA | 1 cut(s) | 418 |
| BsrDI | GCAATG | 2 cut(s) | 41, 474 |
| BssMI | GATC | 1 cut(s) | 557 |
| Bst2UI | CCWGG | 1 cut(s) | 182 |
| Bst4CI | ACNGT | 2 cut(s) | 91, 229 |
| BstBI | TTCGAA | 1 cut(s) | 418 |
| BstDEI | CTNAG | 2 cut(s) | 63, 168 |
| BstF5I | GGATG | 2 cut(s) | 167, 433 |
| BstFNI | CGCG | 1 cut(s) | 347 |
| BstHHI | GCGC | 1 cut(s) | 349 |
| BstKTI | GATC | 1 cut(s) | 560 |
| BstMAI | GTCTC | 1 cut(s) | 288 |
| BstMBI | GATC | 1 cut(s) | 557 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 344, 464, 473 |
| BstNI | CCWGG | 1 cut(s) | 182 |
| BstNSI | RCATGY | 2 cut(s) | 263, 353 |
| BstSCI | CCNGG | 2 cut(s) | 93, 180 |
| BstSLI | GKGCMC | 2 cut(s) | 100, 488 |
| BstUI | CGCG | 1 cut(s) | 347 |
| BstX2I | RGATCY | 1 cut(s) | 557 |
| BstYI | RGATCY | 1 cut(s) | 557 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| BsuRI | GGCC | 5 cut(s) | 14, 98, 207, 452, 531 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtsCI | GGATG | 2 cut(s) | 167, 433 |
| BveI | ACCTGC | 1 cut(s) | 535 |
| CfoI | GCGC | 1 cut(s) | 349 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 97, 433 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| CsiI | ACCWGGT | 1 cut(s) | 180 |
| Csp6I | GTAC | 1 cut(s) | 463 |
| CviAII | CATG | 6 cut(s) | 48, 176, 239, 260, 350, 533 |
| CviJI | RGCY | 9 cut(s) | 14, 62, 98, 122, 172, 207, 368, 452, 531 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 62, 98, 122, 172, 207, 368, 452, 531 |
| CviQI | GTAC | 1 cut(s) | 463 |
| DdeI | CTNAG | 2 cut(s) | 63, 168 |
| DpnI | GATC | 1 cut(s) | 559 |
| DpnII | GATC | 1 cut(s) | 557 |
| EaeI | YGGCCR | 1 cut(s) | 529 |
| EciI | GGCGGA | 1 cut(s) | 463 |
| Eco24I | GRGCYC | 2 cut(s) | 64, 100 |
| Eco47I | GGWCC | 1 cut(s) | 433 |
| Eco57I | CTGAAG | 1 cut(s) | 134 |
| EcoO109I | RGGNCCY | 1 cut(s) | 97 |
| EcoRII | CCWGG | 1 cut(s) | 180 |
| EcoT22I | ATGCAT | 1 cut(s) | 265 |
| EcoT38I | GRGCYC | 2 cut(s) | 64, 100 |
| Esp3I | CGTCTC | 1 cut(s) | 288 |
| FaeI | CATG | 6 cut(s) | 51, 179, 242, 263, 353, 536 |
| FaqI | GGGAC | 1 cut(s) | 315 |
| FatI | CATG | 6 cut(s) | 47, 175, 238, 259, 349, 532 |
| FblI | GTMKAC | 2 cut(s) | 201, 507 |
| FokI | GGATG | 2 cut(s) | 174, 440 |
| FriOI | GRGCYC | 2 cut(s) | 64, 100 |
| GlaI | GCGC | 1 cut(s) | 348 |
| HaeIII | GGCC | 5 cut(s) | 14, 98, 207, 452, 531 |
| HapII | CCGG | 1 cut(s) | 94 |
| HhaI | GCGC | 1 cut(s) | 349 |
| Hin1II | CATG | 6 cut(s) | 51, 179, 242, 263, 353, 536 |
| Hin6I | GCGC | 1 cut(s) | 347 |
| HinP1I | GCGC | 1 cut(s) | 347 |
| HincII | GTYRAC | 2 cut(s) | 202, 508 |
| HindII | GTYRAC | 2 cut(s) | 202, 508 |
| HinfI | GANTC | 2 cut(s) | 67, 288 |
| HpaII | CCGG | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 4 cut(s) | 146, 202, 433, 508 |
| Hpy188I | TCNGA | 5 cut(s) | 66, 153, 219, 268, 293 |
| Hpy8I | GTNNAC | 4 cut(s) | 146, 202, 433, 508 |
| Hpy99I | CGWCG | 1 cut(s) | 206 |
| HpyAV | CCTTC | 5 cut(s) | 4, 110, 397, 414, 494 |
| HpyCH4III | ACNGT | 2 cut(s) | 91, 229 |
| HpyCH4V | TGCA | 2 cut(s) | 34, 263 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 344, 464, 473 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 168 |
| Hsp92II | CATG | 6 cut(s) | 51, 179, 242, 263, 353, 536 |
| HspAI | GCGC | 1 cut(s) | 347 |
| Kzo9I | GATC | 1 cut(s) | 557 |
| LpnPI | CCDG | 5 cut(s) | 107, 167, 194, 354, 530 |
| LweI | GCATC | 3 cut(s) | 53, 152, 272 |
| MabI | ACCWGGT | 1 cut(s) | 180 |
| MaeIII | GTNAC | 1 cut(s) | 329 |
| MalI | GATC | 1 cut(s) | 559 |
| MboI | GATC | 1 cut(s) | 557 |
| MboII | GAAGA | 1 cut(s) | 407 |
| MflI | RGATCY | 1 cut(s) | 557 |
| MhlI | GDGCHC | 3 cut(s) | 64, 100, 488 |
| MlsI | TGGCCA | 1 cut(s) | 531 |
| MluNI | TGGCCA | 1 cut(s) | 531 |
| MlyI | GAGTC | 2 cut(s) | 61, 297 |
| MnlI | CCTC | 5 cut(s) | 34, 177, 225, 400, 406 |
| Mox20I | TGGCCA | 1 cut(s) | 531 |
| Mph1103I | ATGCAT | 1 cut(s) | 265 |
| MscI | TGGCCA | 1 cut(s) | 531 |
| MseI | TTAA | 1 cut(s) | 562 |
| Msp20I | TGGCCA | 1 cut(s) | 531 |
| MspA1I | CMGCKG | 1 cut(s) | 338 |
| MspI | CCGG | 1 cut(s) | 94 |
| MspR9I | CCNGG | 2 cut(s) | 95, 182 |
| MvaI | CCWGG | 1 cut(s) | 182 |
| MvnI | CGCG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 344, 464, 473 |
| NciI | CCSGG | 1 cut(s) | 95 |
| NdeII | GATC | 1 cut(s) | 557 |
| NlaIII | CATG | 6 cut(s) | 51, 179, 242, 263, 353, 536 |
| NlaIV | GGNNCC | 1 cut(s) | 98 |
| NsiI | ATGCAT | 1 cut(s) | 265 |
| NspI | RCATGY | 2 cut(s) | 263, 353 |
| NspV | TTCGAA | 1 cut(s) | 418 |
| PleI | GAGTC | 2 cut(s) | 61, 296 |
| PpsI | GAGTC | 2 cut(s) | 61, 296 |
| Psp6I | CCWGG | 1 cut(s) | 180 |
| PspGI | CCWGG | 1 cut(s) | 180 |
| PspN4I | GGNNCC | 1 cut(s) | 98 |
| PspOMI | GGGCCC | 1 cut(s) | 96 |
| PspPI | GGNCC | 3 cut(s) | 96, 97, 433 |
| PsuI | RGATCY | 1 cut(s) | 557 |
| RsaI | GTAC | 1 cut(s) | 464 |
| RsaNI | GTAC | 1 cut(s) | 463 |
| SalI | GTCGAC | 2 cut(s) | 200, 506 |
| SaqAI | TTAA | 1 cut(s) | 562 |
| Sau3AI | GATC | 1 cut(s) | 557 |
| Sau96I | GGNCC | 3 cut(s) | 96, 97, 433 |
| SchI | GAGTC | 2 cut(s) | 61, 297 |
| ScrFI | CCNGG | 2 cut(s) | 95, 182 |
| SduI | GDGCHC | 3 cut(s) | 64, 100, 488 |
| SetI | ASST | 8 cut(s) | 124, 174, 186, 217, 316, 370, 411, 549 |
| SexAI | ACCWGGT | 1 cut(s) | 180 |
| SfaNI | GCATC | 3 cut(s) | 53, 152, 272 |
| SfuI | TTCGAA | 1 cut(s) | 418 |
| SinI | GGWCC | 1 cut(s) | 433 |
| SsiI | CCGC | 2 cut(s) | 338, 474 |
| SspI | AATATT | 1 cut(s) | 441 |
| StyD4I | CCNGG | 2 cut(s) | 93, 180 |
| TaaI | ACNGT | 2 cut(s) | 91, 229 |
| TaqI | TCGA | 5 cut(s) | 108, 201, 418, 507, 549 |
| Tru1I | TTAA | 1 cut(s) | 562 |
| Tru9I | TTAA | 1 cut(s) | 562 |
| TspDTI | ATGAA | 2 cut(s) | 70, 237 |
| VpaK11BI | GGWCC | 1 cut(s) | 433 |
| XceI | RCATGY | 2 cut(s) | 263, 353 |
| XmiI | GTMKAC | 2 cut(s) | 201, 507 |
| Zsp2I | ATGCAT | 1 cut(s) | 265 |