Rh1DG059400

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000030
Physical Location & Seq
Reverse (-)
10277533 .. 10283341
5809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG059400.1

Sequence Viewer

Length: 2379 bp
ATGGAAGAGGCATGGAAAAGAGAGAGATGGACAACAGACATGTATAAAAGAGTTCGTGATGCGACCCCAACCAAAAGTGGAAGTTCATGCAGTTCAGACGAGTCAAGTCCATTGAAAAACCCCAAAAAACGCATGAAGAAATTAGCATCGGCTGTTAATGAGGAACAGACCGGTGACACTGAAATTACCATAAGAGGTGATTGCCAAGAAGATGGAAAGAATGGAAGCTTTCATAACAGTTCTGGTGAAGCTCCCATTAGAATTAGAGTGGCCGGCCGGGCAAAAGAGTTCAAACGGACTGTTGGAAAGCTGTCAAATGAAAAGGTTTTAGCAATCAGCGATATGGGATTTGGTAATATTTTCATGTTCCGGTGCAGCAAATTGAACCTCTACCTTTGCCAGATGTTGGTCGACAATTTTGATGTAGGCAGCTCGTGCATGAAGATTCATGGGAGGCACTTGATGATCAGCCATGAAGATTTTAAGCGGGTAATGAATGTGAGGGATGGGACTTGTGAAGTAGACCTAGTTGGTTGCTTGGATGATGCAGATATCGTGCAACTGAAGAGCATGATATGTGGAAGTGATAGTGAAATCAGTATTGACCGCTTGAGGAGTTTGGTTTTAGAGACCGAAAGTGCTGATGACATATTTAAAATTTCCTTTTGCTTGTATGCCATTGGAACTCTATTGTGCCCAACCGGAGATGACCATGTTGATCCGAGGTATCTGCTACCGTTGAGGGAGCCAAGTACTATACATTCAAAGAAATGGGCGAGTTATTTCTTTATGAAGCTAGTTGAAGGGGTGTCATCCTATCAGAGTAGGAGGTGTGGGCTGGTATCAGGTTGTATTGTATTTCTCCAGCTATTCTACCTGGACGTAGTTGCGTACAGCCAGCTTTTTAGGATTGTGCCAAAGATTGTTCCTCCGGTAATGACATGGGGTGTTAAGGAAGCGAAAAGGATATATGACTTGGTGGAGGAAAGTGGTGGGTTTGAATGCGTTTCAGGCATATATGTCACTAAGAGGTGGTCAGTGGAGAAAACCCTTGAGGAAGGAGGATCTGTTGACTTGAGCACGGGGTTGAATAGAAATGTGGTCGATGATTTGTGTGAAGTGAAGTCTGATTTATGTGGTGTGAAAGGTGATGTTGAGGAGCTGAAATCATATGTGTCTCCGCTGGAACCGGATATGGTGCGCCTGCGAAATGCAATTCTTACACTGGAAACATCTGTTGGTAAGATAAAGTCTGAAGGCCTCAGTCATATTGTCTCAGAGGTGTTGCAGTCAGTGGTGGCTTTGAAGGCAAAGGGTAAGGGTGTAGGAAGTGATGATAATCATGAATCAATTCAGTATCCACCCACCTGCACTGAAACAGAGCACTATTCATCCAAGAAGGAGGAGTGTGAACACTCAAGTTCCCGTGCAAAAGGCTTGGAAGCAACCTGCGGTTTGGAGAAACAGAATAACTGTAACTTTGCTGTCGTGTGTGACATTTCCAACAGTGAGTCTTATTTGCTTACACACTTGTTCCGGAAGAACGCAACAGGGGACGATATGTTTGGAAGTGCCCAAGTTGCTAGGTTTGGAGACTATACTGTTAGCCGCCGGGACATTTGCTGCCTATCACCAATGCAGTGCTTGACAAGCGAGATTGTCAACATTGCGGCGGCCTACTTGTCTGAAGACTCTAGTCATAACTGGTTCATGTCATCATTTTTCTCTGAATGTGCTAAGGAGTTTTTACAAGGAATTGGGGTCGAAGGTTTGATGTCATATACTGTGTCAACTTGTCGTCTACGCACATATAGGGGGCGATTGGCAGGTTGTGAAAAGGTATTTGTTCCGATTCATGATGGAGTCATGAGTCATTGGTTTTTGGTTGTCATCAACTTGCCAGAAGCATTGTGTGAGATTTGGGACAGCAACCCGCACAGCTGTGCGAAGCAACGCCGCGAGGAATATGCCCGTGCTGTGGTGTCCTTTTTTGATAAGGTGTTTGCCGAAGAACTACGAATGTTGCCTATGTTGTACAGCAGATTAACCTCTTTCTCCATTACATACAAGCACCACACCTCTACACAGGGCAACAGCCATGACTCTGGTATATTCGTGGTTAGGAACATGCAGTATTATGGACAGCGTTGGTGTGAAGCGTTCAACTCTGGGGACCAGAGGCTGAGGATTGCACTTGAGATTGTAAACCACCGTAAGAATGAGGTACTGCATTTAGTGTGGGCAGCAGTTGCTGAAGAAATGCTGCGCACTCCACATTCCAATTCCCATGGTGGAGAGAACTCCGTCCCCATTCCCAACCGCATTGCAATTGCCGATATCGCTGGTATTAAGTTCAAACCGCGACGTTCACGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

792

Amino Acids

88.98

Weight (kDa)

6.54

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 610 - 714 2.4e-14 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1376
Acc16I TGCGCA 1 cut(s) 2267
Acc36I ACCTGC 3 cut(s) 1376, 1457, 1817
AccB7I CCANNNNNTGG 1 cut(s) 406
AccI GTMKAC 3 cut(s) 411, 522, 1801
AccII CGCG 2 cut(s) 1959, 2362
AccIII TCCGGA 1 cut(s) 1536
AclWI GGATC 2 cut(s) 713, 1072
AcoI YGGCCR 2 cut(s) 270, 274
AcsI RAATTY 1 cut(s) 657
AcuI CTGAAG 4 cut(s) 584, 1275, 1707, 2274
AfaI GTAC 4 cut(s) 754, 893, 2036, 2226
AfiI CCNNNNNNNGG 2 cut(s) 406, 1978
AflIII ACRYGT 1 cut(s) 39
AgeI ACCGGT 1 cut(s) 170
AjnI CCWGG 1 cut(s) 876
AjuI GAANNNNNNNTTGG 2 cut(s) 1221, 1253
AleI CACNNNNGTG 1 cut(s) 1941
AluBI AGCT 9 cut(s) 228, 251, 310, 432, 796, 868, 901, 1162, 1941
AluI AGCT 9 cut(s) 228, 251, 310, 432, 796, 868, 901, 1162, 1941
Alw21I GWGCWC 2 cut(s) 1082, 1386
Alw26I GTCTC 4 cut(s) 623, 1182, 1279, 1587
AlwI GGATC 2 cut(s) 713, 1072
AlwNI CAGNNNCTG 2 cut(s) 2182, 2252
Aor13HI TCCGGA 1 cut(s) 1536
AoxI GGCC 4 cut(s) 270, 274, 1258, 1674
ApeKI GCWGC 5 cut(s) 375, 429, 1623, 2243, 2263
ApoI RAATTY 1 cut(s) 657
ArsI GACNNNNNNTTYG 2 cut(s) 1547, 1579
AsiGI ACCGGT 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 1350
AspLEI GCGC 3 cut(s) 1203, 2268, 2376
AspS9I GGNCC 1 cut(s) 2173
AsuC2I CCSGG 2 cut(s) 278, 1613
AsuHPI GGTGA 5 cut(s) 185, 209, 257, 1160, 1623
AvaII GGWCC 1 cut(s) 2173
BaeGI GKGCMC 2 cut(s) 698, 1576
BauI CACGAG 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 1695
Bbv12I GWGCWC 2 cut(s) 1082, 1386
BbvCI CCTCAGC 1 cut(s) 2183
BbvI GCAGC 5 cut(s) 387, 441, 1610, 2250, 2255
BccI CCATC 4 cut(s) 21, 206, 500, 1853
BcgI CGANNNNNNTGC 4 cut(s) 712, 746, 1949, 1983
BciT130I CCWGG 1 cut(s) 878
BciVI GTATCC 1 cut(s) 1368
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 2 cut(s) 278, 1613
BcoDI GTCTC 4 cut(s) 623, 1182, 1279, 1587
BfaI CTAG 4 cut(s) 527, 797, 1584, 1695
BfoI RGCGCY 1 cut(s) 2377
BfuAI ACCTGC 3 cut(s) 1376, 1457, 1817
BfuI GTATCC 1 cut(s) 1368
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 9 cut(s) 376, 430, 1609, 1624, 1671, 1674, 1957, 2244, 2264
BlsI GCNGC 9 cut(s) 377, 431, 1610, 1625, 1672, 1675, 1958, 2245, 2265
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 3 cut(s) 278, 878, 1613
Bme18I GGWCC 1 cut(s) 2173
BmgT120I GGNCC 1 cut(s) 2173
BmiI GGNNCC 3 cut(s) 747, 1188, 2174
BmrFI CCNGG 3 cut(s) 278, 878, 1613
BmsI GCATC 3 cut(s) 49, 155, 535
BoxI GACNNNNGTC 1 cut(s) 1695
BpiI GAAGAC 1 cut(s) 1695
BpmI CTGGAG 1 cut(s) 848
Bpu10I CCTNAGC 2 cut(s) 1737, 2183
BpuEI CTTGAG 5 cut(s) 631, 1073, 1096, 1402, 2216
BpuMI CCSGG 2 cut(s) 278, 1613
BsaBI GATNNNNATC 1 cut(s) 1338
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 722, 2287
BsaWI WCCGGW 6 cut(s) 170, 369, 701, 931, 1189, 1536
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1978
Bse118I RCCGGY 2 cut(s) 170, 272
Bse1I ACTGG 2 cut(s) 1230, 1709
Bse3DI GCAATG 2 cut(s) 1665, 2322
Bse8I GATNNNNATC 1 cut(s) 1338
BseAI TCCGGA 1 cut(s) 1536
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 2 cut(s) 722, 2287
BseGI GGATG 4 cut(s) 511, 547, 812, 1391
BseJI GATNNNNATC 1 cut(s) 1338
BseLI CCNNNNNNNGG 2 cut(s) 406, 1978
BseMI GCAATG 2 cut(s) 1665, 2322
BseMII CTCAG 3 cut(s) 1276, 1290, 2174
BseNI ACTGG 2 cut(s) 1230, 1709
BseRI GAGGAG 3 cut(s) 628, 1172, 1418
BseSI GKGCMC 2 cut(s) 698, 1576
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 5 cut(s) 387, 441, 1610, 2250, 2255
BsgI GTGCAG 2 cut(s) 394, 1354
Bsh1236I CGCG 2 cut(s) 1959, 2362
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 4 cut(s) 272, 276, 1260, 1676
BshTI ACCGGT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 1082, 1386
BsiSI CCGG 9 cut(s) 171, 273, 277, 370, 702, 932, 1190, 1537, 1612
BslFI GGGAC 6 cut(s) 523, 1568, 1628, 1937, 2186, 2291
BslI CCNNNNNNNGG 2 cut(s) 406, 1978
BsmAI GTCTC 4 cut(s) 623, 1182, 1279, 1587
BsmFI GGGAC 6 cut(s) 523, 1568, 1628, 1937, 2186, 2291
BsmI GAATGC 1 cut(s) 1007
BsnI GGCC 4 cut(s) 272, 276, 1260, 1676
Bso31I GGTCTC 1 cut(s) 623
Bsp1286I GDGCHC 4 cut(s) 698, 1082, 1386, 1576
Bsp13I TCCGGA 1 cut(s) 1536
Bsp1407I TGTACA 1 cut(s) 2034
Bsp143I GATC 3 cut(s) 465, 718, 1064
Bsp19I CCATGG 1 cut(s) 2287
BspANI GGCC 4 cut(s) 272, 276, 1260, 1676
BspCNI CTCAG 3 cut(s) 1275, 1289, 2175
BspEI TCCGGA 1 cut(s) 1536
BspFNI CGCG 2 cut(s) 1959, 2362
BspHI TCATGA 3 cut(s) 1342, 1855, 1866
BspLI GGNNCC 3 cut(s) 747, 1188, 2174
BspMI ACCTGC 3 cut(s) 1376, 1457, 1817
BspPI GGATC 2 cut(s) 713, 1072
BspQI GCTCTTC 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 1665, 2322
BsrFI RCCGGY 2 cut(s) 170, 272
BsrGI TGTACA 1 cut(s) 2034
BsrI ACTGG 2 cut(s) 1230, 1709
BssAI RCCGGY 2 cut(s) 170, 272
BssECI CCNNGG 2 cut(s) 722, 2287
BssMI GATC 3 cut(s) 465, 718, 1064
BssSI CACGAG 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 2287
Bst2BI CACGAG 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 8 cut(s) 239, 301, 738, 1475, 1508, 1603, 1786, 2213
Bst6I CTCTTC 1 cut(s) 560
BstAPI GCANNNNNTGC 2 cut(s) 435, 2249
BstAUI TGTACA 1 cut(s) 2034
BstC8I GCNNGC 3 cut(s) 274, 899, 1205
BstDEI CTNAG 5 cut(s) 1026, 1262, 1276, 1737, 2183
BstDSI CCRYGG 1 cut(s) 2287
BstF5I GGATG 4 cut(s) 511, 547, 812, 1391
BstFNI CGCG 2 cut(s) 1959, 2362
BstH2I RGCGCY 1 cut(s) 2377
BstHHI GCGC 3 cut(s) 1203, 2268, 2376
BstKTI GATC 3 cut(s) 468, 721, 1067
BstMAI GTCTC 4 cut(s) 623, 1182, 1279, 1587
BstMBI GATC 3 cut(s) 465, 718, 1064
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 8 cut(s) 278, 435, 1011, 1307, 1580, 1650, 2249, 2339
BstNI CCWGG 1 cut(s) 878
BstNSI RCATGY 2 cut(s) 43, 2131
BstPAI GACNNNNGTC 1 cut(s) 1695
BstSCI CCNGG 3 cut(s) 276, 876, 1611
BstSLI GKGCMC 2 cut(s) 698, 1576
BstUI CGCG 2 cut(s) 1959, 2362
BstV1I GCAGC 5 cut(s) 387, 441, 1610, 2250, 2255
BstV2I GAAGAC 1 cut(s) 1695
BstX2I RGATCY 1 cut(s) 1064
BstXI CCANNNNNNTGG 2 cut(s) 212, 2105
BstYI RGATCY 1 cut(s) 1064
BstZI CGGCCG 1 cut(s) 274
BsuI GTATCC 1 cut(s) 1368
BsuRI GGCC 4 cut(s) 272, 276, 1260, 1676
BtgI CCRYGG 1 cut(s) 2287
BtsCI GGATG 4 cut(s) 511, 547, 812, 1391
BtsI GCAGTG 1 cut(s) 1646
BtsIMutI CAGTG 7 cut(s) 177, 1044, 1223, 1299, 1371, 1513, 1646
BveI ACCTGC 3 cut(s) 1376, 1457, 1817
Cac8I GCNNGC 3 cut(s) 274, 899, 1205
CaiI CAGNNNCTG 2 cut(s) 2182, 2252
CciI TCATGA 3 cut(s) 1342, 1855, 1866
CfoI GCGC 3 cut(s) 1203, 2268, 2376
Cfr10I RCCGGY 2 cut(s) 170, 272
Cfr13I GGNCC 1 cut(s) 2173
Csp6I GTAC 4 cut(s) 753, 892, 2035, 2225
CspAI ACCGGT 1 cut(s) 170
CviQI GTAC 4 cut(s) 753, 892, 2035, 2225
DdeI CTNAG 5 cut(s) 1026, 1262, 1276, 1737, 2183
DpnI GATC 3 cut(s) 467, 720, 1066
DpnII GATC 3 cut(s) 465, 718, 1064
DraI TTTAAA 1 cut(s) 655
EaeI YGGCCR 2 cut(s) 270, 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
EclXI CGGCCG 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 2287
Eco147I AGGCCT 1 cut(s) 1260
Eco31I GGTCTC 1 cut(s) 623
Eco32I GATATC 2 cut(s) 553, 2338
Eco47I GGWCC 1 cut(s) 2173
Eco52I CGGCCG 1 cut(s) 274
Eco57I CTGAAG 4 cut(s) 584, 1275, 1707, 2274
EcoRII CCWGG 1 cut(s) 876
EcoRV GATATC 2 cut(s) 553, 2338
EcoT14I CCWWGG 1 cut(s) 2287
ErhI CCWWGG 1 cut(s) 2287
FaqI GGGAC 6 cut(s) 523, 1568, 1628, 1937, 2186, 2291
FauI CCCGC 2 cut(s) 480, 1941
FauNDI CATATG 1 cut(s) 1171
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 3 cut(s) 411, 522, 1801
Fnu4HI GCNGC 9 cut(s) 376, 430, 1609, 1624, 1671, 1674, 1957, 2244, 2264
FokI GGATG 4 cut(s) 518, 554, 799, 1378
FseI GGCCGGCC 1 cut(s) 276
Fsp4HI GCNGC 9 cut(s) 376, 430, 1609, 1624, 1671, 1674, 1957, 2244, 2264
FspBI CTAG 4 cut(s) 527, 797, 1584, 1695
FspI TGCGCA 1 cut(s) 2267
GlaI GCGC 3 cut(s) 1202, 2267, 2375
GluI GCNGC 9 cut(s) 376, 430, 1609, 1624, 1671, 1674, 1957, 2244, 2264
GsuI CTGGAG 1 cut(s) 848
HaeII RGCGCY 1 cut(s) 2377
HaeIII GGCC 4 cut(s) 272, 276, 1260, 1676
HapII CCGG 9 cut(s) 171, 273, 277, 370, 702, 932, 1190, 1537, 1612
HhaI GCGC 3 cut(s) 1203, 2268, 2376
Hin6I GCGC 3 cut(s) 1201, 2266, 2374
HinP1I GCGC 3 cut(s) 1201, 2266, 2374
HincII GTYRAC 4 cut(s) 412, 1072, 1663, 1791
HindII GTYRAC 4 cut(s) 412, 1072, 1663, 1791
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 9 cut(s) 101, 445, 1346, 1511, 1691, 1852, 1863, 1870, 2102
HpaII CCGG 9 cut(s) 171, 273, 277, 370, 702, 932, 1190, 1537, 1612
HphI GGTGA 5 cut(s) 185, 209, 257, 1160, 1623
Hpy166II GTNNAC 9 cut(s) 412, 523, 1072, 1412, 1663, 1791, 1802, 2206, 2369
Hpy188I TCNGA 9 cut(s) 97, 723, 822, 1129, 1255, 1279, 1687, 1729, 1851
Hpy188III TCNNGA 5 cut(s) 56, 1343, 1537, 1856, 1867
Hpy8I GTNNAC 9 cut(s) 412, 523, 1072, 1412, 1663, 1791, 1802, 2206, 2369
Hpy99I CGWCG 1 cut(s) 2367
HpyAV CCTTC 6 cut(s) 797, 1052, 1250, 1300, 1393, 1760
HpyCH4III ACNGT 8 cut(s) 239, 301, 738, 1475, 1508, 1603, 1786, 2213
HpyCH4IV ACGT 2 cut(s) 882, 2365
HpyF10VI GCNNNNNNNGC 8 cut(s) 278, 435, 1011, 1307, 1580, 1650, 2249, 2339
HpyF3I CTNAG 5 cut(s) 1026, 1262, 1276, 1737, 2183
HpySE526I ACGT 2 cut(s) 882, 2365
HspAI GCGC 3 cut(s) 1201, 2266, 2374
Kpn2I TCCGGA 1 cut(s) 1536
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 465, 718, 1064
LguI GCTCTTC 1 cut(s) 560
LmnI GCTCC 3 cut(s) 256, 745, 1159
Lsp1109I GCAGC 5 cut(s) 387, 441, 1610, 2250, 2255
LweI GCATC 3 cut(s) 49, 155, 535
MaeI CTAG 4 cut(s) 527, 797, 1584, 1695
MaeII ACGT 2 cut(s) 882, 2365
MaeIII GTNAC 4 cut(s) 173, 1021, 1475, 1493
MalI GATC 3 cut(s) 467, 720, 1066
MboI GATC 3 cut(s) 465, 718, 1064
MfeI CAATTG 1 cut(s) 2328
MflI RGATCY 1 cut(s) 1064
MhlI GDGCHC 4 cut(s) 698, 1082, 1386, 1576
MlyI GAGTC 6 cut(s) 110, 1520, 1685, 1872, 1879, 2096
MmeI TCCRAC 2 cut(s) 283, 1527
MroI TCCGGA 1 cut(s) 1536
MroNI GCCGGC 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 1350
MseI TTAA 6 cut(s) 156, 483, 654, 951, 2045, 2349
MslI CAYNNNNRTG 1 cut(s) 1941
MspA1I CMGCKG 2 cut(s) 1183, 1941
MspI CCGG 9 cut(s) 171, 273, 277, 370, 702, 932, 1190, 1537, 1612
MspR9I CCNGG 3 cut(s) 278, 878, 1613
MunI CAATTG 1 cut(s) 2328
Mva1269I GAATGC 1 cut(s) 1007
MvaI CCWGG 1 cut(s) 878
MvnI CGCG 2 cut(s) 1959, 2362
MwoI GCNNNNNNNGC 8 cut(s) 278, 435, 1011, 1307, 1580, 1650, 2249, 2339
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 2 cut(s) 278, 1613
NcoI CCATGG 1 cut(s) 2287
NdeI CATATG 1 cut(s) 1171
NdeII GATC 3 cut(s) 465, 718, 1064
NgoMIV GCCGGC 1 cut(s) 272
NlaIV GGNNCC 3 cut(s) 747, 1188, 2174
NmuCI GTSAC 3 cut(s) 173, 1021, 1493
NsbI TGCGCA 1 cut(s) 2267
NspI RCATGY 2 cut(s) 43, 2131
OliI CACNNNNGTG 1 cut(s) 1941
PagI TCATGA 3 cut(s) 1342, 1855, 1866
PaqCI CACCTGC 1 cut(s) 1376
PceI AGGCCT 1 cut(s) 1260
PciI ACATGT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 560
PctI GAATGC 1 cut(s) 1007
PdiI GCCGGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 1350
PfeI GAWTC 3 cut(s) 445, 1346, 1852
PflMI CCANNNNNTGG 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 9 cut(s) 377, 431, 1610, 1625, 1672, 1675, 1958, 2245, 2265
PleI GAGTC 6 cut(s) 109, 1519, 1685, 1871, 1878, 2096
PpsI GAGTC 6 cut(s) 109, 1519, 1685, 1871, 1878, 2096
PscI ACATGT 1 cut(s) 39
PshAI GACNNNNGTC 1 cut(s) 1695
Psp6I CCWGG 1 cut(s) 876
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 3 cut(s) 747, 1188, 2174
PspPI GGNCC 1 cut(s) 2173
PstNI CAGNNNCTG 2 cut(s) 2182, 2252
PsuI RGATCY 1 cut(s) 1064
PvuII CAGCTG 1 cut(s) 1941
RigI GGCCGGCC 1 cut(s) 276
RsaI GTAC 4 cut(s) 754, 893, 2036, 2226
RsaNI GTAC 4 cut(s) 753, 892, 2035, 2225
RseI CAYNNNNRTG 1 cut(s) 1941
SalI GTCGAC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 6 cut(s) 156, 483, 654, 951, 2045, 2349
SatI GCNGC 9 cut(s) 376, 430, 1609, 1624, 1671, 1674, 1957, 2244, 2264
Sau3AI GATC 3 cut(s) 465, 718, 1064
Sau96I GGNCC 1 cut(s) 2173
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 6 cut(s) 110, 1520, 1685, 1872, 1879, 2096
ScrFI CCNGG 3 cut(s) 278, 878, 1613
SduI GDGCHC 4 cut(s) 698, 1082, 1386, 1576
SfaNI GCATC 3 cut(s) 49, 155, 535
SinI GGWCC 1 cut(s) 2173
SmiMI CAYNNNNRTG 1 cut(s) 1941
SmlI CTYRAG 5 cut(s) 610, 1052, 1075, 1417, 2195
SmoI CTYRAG 5 cut(s) 610, 1052, 1075, 1417, 2195
SseBI AGGCCT 1 cut(s) 1260
SspI AATATT 1 cut(s) 358
SspMI CTAG 4 cut(s) 527, 797, 1584, 1695
StuI AGGCCT 1 cut(s) 1260
StyD4I CCNGG 3 cut(s) 276, 876, 1611
StyI CCWWGG 1 cut(s) 2287
TaaI ACNGT 8 cut(s) 239, 301, 738, 1475, 1508, 1603, 1786, 2213
TaiI ACGT 2 cut(s) 885, 2368
TaqI TCGA 3 cut(s) 411, 1104, 1764
TaqII GACCGA 1 cut(s) 647
TatI WGTACW 2 cut(s) 752, 2034
TauI GCSGC 4 cut(s) 1611, 1673, 1676, 1959
TfiI GAWTC 3 cut(s) 445, 1346, 1852
Tru1I TTAA 6 cut(s) 156, 483, 654, 951, 2045, 2349
Tru9I TTAA 6 cut(s) 156, 483, 654, 951, 2045, 2349
TscAI CASTG 7 cut(s) 184, 1044, 1230, 1299, 1378, 1513, 1646
TseFI GTSAC 3 cut(s) 173, 1021, 1493
TseI GCWGC 5 cut(s) 375, 429, 1623, 2243, 2263
Tsp45I GTSAC 3 cut(s) 173, 1021, 1493
TspGWI ACGGA 2 cut(s) 310, 2293
TspRI CASTG 7 cut(s) 184, 1044, 1230, 1299, 1378, 1513, 1646
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 2173
XapI RAATTY 1 cut(s) 657
XceI RCATGY 2 cut(s) 43, 2131
XmiI GTMKAC 3 cut(s) 411, 522, 1801
XmnI GAANNNNTTC 1 cut(s) 1350
XspI CTAG 4 cut(s) 527, 797, 1584, 1695
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.