RchiOBHm_Chr6g0268131

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000030
Physical Location & Seq
Reverse (-)
24967644 .. 24973128
5485 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24049

Sequence Viewer

Length: 2460 bp
ATGAGTGCAAGGGCTGGTGGCCATCTAGGTGTACTGGAAAATATGAAGGGCCATATATCAAATGAAAGGGGGATATGGTTTGATGCACCTGCTGACTTCTCCAAAACAATTGTGAGTCTGCCATTGGAGAAAATTTCTGCTATAAGGGATATGGGCTTCGGTCCACTTCAAACAATAGGCTGCCCCAACTTGTATGAAGATGTATGCCACATGATGCTAAACAACCTTGAACCCTTGAATCAAACAGTTGTTATACATGGCAGGACTTTCTGTATTACGGCATCAGATTTTGAGCGCATCATGGGAGTCAAAGATGGAGGAGTTGATGTAGATTTTAGTGGAGGAGTTAACGAATCAGTGATTGCCGTGCTCAAGAAAGAGTTAGACGGAAATGATGGGAACATTACTATGAACTCATTGAAGGACATTGTGTTGAATAGGAGGGAAGTAGATGGTATTTTCAAAGTCGCGTTTGTCATGTATGCAATGTCGGGGCTGCTGTGTCCAACCGAGGGAAACATTGTTGACCACATGTTGCTAGTGCCGCTCATGAAGGCCGAGTCAATTAGGGGACTTAATTGGGCCACATATTGCTGCAGTAAACTACAAGATGCCGTGCTTAGCATGAAGCCAGGAGATAATGGGAGAATAAGTGTGTGTTTTTTGTTTCTCCAACTATTCTACTTTGATGTTGTTGGTACAAGTTTGGGTTTGGTTGACAAGAGCATAACTCCACTTATATGGTGGGAAGTTGATATGGCTTCTGAGTTGGTTGAGTGGATTGGGCAGCAAGGAGGTGTTAGTACGGACAACAAGAGGGTTTGGGAGGTTGAACGTAAGGATTCTTGGTGCAATTTTAAAGTGCCTCAGGAAGATCAAGAGTGGAAATCTACTAATGCAAGTGCTTATGATAAGATGAAAGCAGTTTGCTCAGACATGGATTGTGTTAAGGAAGATGTAGATGTTTTGAAGGACAACGTAAGTCAGATAGTGAGAGTGCAAGAAGGTATGTCAATGCAGATTGAGGGGATACAACAGTCCTTGAAGGACCTGGTACCTACCATTGTAAAAGAGGTTGTTAAACAGTACAACCCTGAAACAAATGAAAGGCGACCTTTGCACACGACATGGACAGAAAGGGGAAACACTGAGTTGAAGAGTAATAACGCACAAAGCAATAGTGGGAAGAAATTGCAATCTGTTTATGTCATTTCAGATGACACATCATCATTGAAGTTTCCTCACTCCAATAATGCTAACCCGGGTGTTGCAGCCTACCATCAGGCCGAGAAGGAGAAAAATCTAATAGACCAGGATTGTGCGGTGTCTGATTGTTCGGTTAGCCCTGGAGGACCACCTATGGTTGCACGTATGAGTAGAAAGGAGAAGAAGCAGAAAAGATCAACTCCGGCGCCAATACATATTGTGCGTGCTCTATTCAAAACTCGCACACGTAAAGGCTCAAACAAGGTGGATAAATGCCGTGGAAAGTTCAGCAAGCACAAAAAGAGTGAAACCATTCATGCAGGCCCATTCTCTGTCCACAAGAGTAGGCCCAAATTTGAAGTTGAACTACTGAGTTTTATATTTTGGCCTACTCCACCAACAGATCCGTTCTCAAGTGTGGTTGTGGCGAATATTGGAGGAATGAACCTTACAAGAACTGACCTACAATCTCTCGGTCCAAGGCAACTAGTTTGCAATATGGTGATAAATATTTTTGCCATGTACATGAATGAACCAGGAAAGGAGGATTGGTATCTTCCCACTTTTTTTGCGAGCAACTTGATTAAGAAGGATGTCAAAATGTCTGTGACTGAACATGTTGAACGCATCAGGTCTGTCTGTGCATTGAAGAGATTTGATGGGCGGCTATCTGCCTGTAGAAGGATTTTCATACCTATGCATGAAGAAGGGACAAATAAGAGACATGGACACTGGTATTTGTTGGTAGTACATGTGCGTGATAGACATGCAGAGATCCTGGATAGCTATCCAGCTAATGGAAAGACAATGTCAAGGATACAAGCTGCACGTCTGGCGATGAACATGTTGGACCGTGTATTTGTGAGAGACATAGCGGAGGATTTAAATCCACATGTATCATTAGGTACTCTCCCTTTTGATATGTCTTCATTTGGTCCAATCCAACGAAATACTACAGACTGCGGAGTGTTTGTGATAAGAAATATGCAGCATTATGGTACTGATTGGGCTGCCAAGTATGATTCTGATGGTGAGCGTGCAAGTTTGGTGTTGGAGTGTCTTCTTCATCAAAGAAATGATGTACCTGATTTGCATGTAAAGGTGGACCATGCATTGGCTCTTTGGAGGGGAACTGTGCAAGGAAAGCCAGGGCATATAGGATCTGCAGTCATAGATGTCTCTGAGGATTCCAACCCCAGTGGTACCAAGCCTAATCAAGAGAAAATGGTCACTCCGACAGTCCGAATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

819

Amino Acids

91.74

Weight (kDa)

7.8

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 588 - 734 5.3e-12 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 97
Acc36I ACCTGC 1 cut(s) 97
Acc65I GGTACC 2 cut(s) 1054, 2408
AccB1I GGYRCC 3 cut(s) 1054, 1411, 2408
AccB7I CCANNNNNTGG 2 cut(s) 2003, 2320
AccBSI CCGCTC 1 cut(s) 547
AccII CGCG 1 cut(s) 470
AciI CCGC 5 cut(s) 545, 1322, 1870, 2081, 2169
AclWI GGATC 3 cut(s) 1604, 1975, 2374
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 132, 1559
AcyI GRCGYC 1 cut(s) 1412
AfiI CCNNNNNNNGG 4 cut(s) 512, 1887, 2003, 2320
AflIII ACRYGT 6 cut(s) 531, 1451, 1822, 1957, 2049, 2098
AhlI ACTAGT 1 cut(s) 1693
AjiI CACGTC 1 cut(s) 2036
AjnI CCWGG 7 cut(s) 631, 1050, 1311, 1345, 1741, 1983, 2353
AjuI GAANNNNNNNTTGG 2 cut(s) 1738, 1770
AluBI AGCT 3 cut(s) 1992, 2000, 2030
AluI AGCT 3 cut(s) 1992, 2000, 2030
Alw21I GWGCWC 2 cut(s) 372, 1435
Alw26I GTCTC 3 cut(s) 1921, 2067, 2389
AlwI GGATC 3 cut(s) 1604, 1975, 2374
Ama87I CYCGRG 1 cut(s) 1261
AoxI GGCC 8 cut(s) 19, 49, 555, 582, 1284, 1528, 1553, 1592
ApeKI GCWGC 8 cut(s) 180, 496, 594, 787, 1271, 2030, 2194, 2216
ApoI RAATTY 2 cut(s) 132, 1559
ArsI GACNNNNNNTTYG 2 cut(s) 2048, 2080
Asp700I GAANNNNTTC 1 cut(s) 1518
Asp718I GGTACC 2 cut(s) 1054, 2408
AspLEI GCGC 2 cut(s) 297, 1414
AsuC2I CCSGG 2 cut(s) 1262, 1263
AsuHPI GGTGA 2 cut(s) 1720, 2249
AvaI CYCGRG 1 cut(s) 1261
AvaII GGWCC 7 cut(s) 161, 1048, 1352, 1682, 2056, 2141, 2311
AxyI CCTNAGG 1 cut(s) 867
BaeI ACNNNNGTAYC 2 cut(s) 1022, 1055
BalI TGGCCA 1 cut(s) 21
BanI GGYRCC 3 cut(s) 1054, 1411, 2408
BarI GAAGNNNNNNTAC 2 cut(s) 1557, 1589
BbsI GAAGAC 2 cut(s) 2124, 2258
Bbv12I GWGCWC 2 cut(s) 372, 1435
BbvI GCAGC 8 cut(s) 167, 483, 581, 799, 1283, 2017, 2203, 2206
BccI CCATC 7 cut(s) 30, 308, 389, 446, 1287, 1859, 2228
BceAI ACGGC 4 cut(s) 294, 350, 599, 1467
BciT130I CCWGG 7 cut(s) 633, 1052, 1313, 1347, 1743, 1985, 2355
BciVI GTATCC 2 cut(s) 1023, 2016
BcnI CCSGG 2 cut(s) 1262, 1263
BcoDI GTCTC 3 cut(s) 1921, 2067, 2389
BcuI ACTAGT 1 cut(s) 1693
BfaI CTAG 3 cut(s) 26, 539, 1694
BfmI CTRYAG 4 cut(s) 595, 1882, 2160, 2370
BfoI RGCGCY 1 cut(s) 1415
BfuAI ACCTGC 1 cut(s) 97
BfuI GTATCC 2 cut(s) 1023, 2016
BlpI GCTNAGC 1 cut(s) 620
Bme1390I CCNGG 9 cut(s) 633, 1052, 1262, 1263, 1313, 1347, 1743, 1985, 2355
Bme18I GGWCC 7 cut(s) 161, 1048, 1352, 1682, 2056, 2141, 2311
BmeT110I CYCGRG 1 cut(s) 1261
BmgBI CACGTC 1 cut(s) 2036
BmiI GGNNCC 3 cut(s) 1056, 1413, 2410
BmrFI CCNGG 9 cut(s) 633, 1052, 1262, 1263, 1313, 1347, 1743, 1985, 2355
BmrI ACTGGG 1 cut(s) 2397
BmsI GCATC 6 cut(s) 73, 204, 290, 306, 601, 1842
BmuI ACTGGG 1 cut(s) 2397
BpiI GAAGAC 2 cut(s) 2124, 2258
BplI GAGNNNNNCTC 2 cut(s) 715, 747
BpmI CTGGAG 1 cut(s) 1368
Bpu1102I GCTNAGC 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 356, 1603
BpuMI CCSGG 2 cut(s) 1262, 1263
BsaAI YACGTR 2 cut(s) 1370, 1454
BsaBI GATNNNNATC 3 cut(s) 1758, 1992, 2091
BsaHI GRCGYC 1 cut(s) 1412
BsaJI CCNNGG 6 cut(s) 510, 1261, 1345, 1483, 1685, 2354
BsaXI ACNNNNNCTCC 8 cut(s) 312, 342, 637, 667, 1742, 1772, 2163, 2193
Bsc4I CCNNNNNNNGG 4 cut(s) 512, 1887, 2003, 2320
Bse1I ACTGG 3 cut(s) 39, 1943, 2403
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 492
Bse8I GATNNNNATC 3 cut(s) 1758, 1992, 2091
BseBI CCWGG 7 cut(s) 633, 1052, 1313, 1347, 1743, 1985, 2355
BseDI CCNNGG 6 cut(s) 510, 1261, 1345, 1483, 1685, 2354
BseGI GGATG 1 cut(s) 1804
BseJI GATNNNNATC 3 cut(s) 1758, 1992, 2091
BseLI CCNNNNNNNGG 4 cut(s) 512, 1887, 2003, 2320
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 6 cut(s) 756, 881, 945, 1140, 1568, 2379
BseNI ACTGG 3 cut(s) 39, 1943, 2403
BseRI GAGGAG 2 cut(s) 333, 357
BseXI GCAGC 8 cut(s) 167, 483, 581, 799, 1283, 2017, 2203, 2206
BsgI GTGCAG 1 cut(s) 2016
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 8 cut(s) 21, 51, 557, 584, 1286, 1530, 1555, 1594
BshNI GGYRCC 3 cut(s) 1054, 1411, 2408
BsiHKAI GWGCWC 2 cut(s) 372, 1435
BsiHKCI CYCGRG 1 cut(s) 1261
BsiSI CCGG 2 cut(s) 1262, 1409
BslFI GGGAC 2 cut(s) 585, 1930
BslI CCNNNNNNNGG 4 cut(s) 512, 1887, 2003, 2320
BsmAI GTCTC 3 cut(s) 1921, 2067, 2389
BsmFI GGGAC 2 cut(s) 585, 1930
BsnI GGCC 8 cut(s) 21, 51, 557, 584, 1286, 1530, 1555, 1594
BsoBI CYCGRG 1 cut(s) 1261
Bsp1286I GDGCHC 2 cut(s) 372, 1435
Bsp1407I TGTACA 1 cut(s) 1728
Bsp143I GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
Bsp1720I GCTNAGC 1 cut(s) 620
BspACI CCGC 5 cut(s) 545, 1322, 1870, 2081, 2169
BspANI GGCC 8 cut(s) 21, 51, 557, 584, 1286, 1530, 1555, 1594
BspCNI CTCAG 6 cut(s) 757, 880, 944, 1141, 1569, 2380
BspFNI CGCG 1 cut(s) 470
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 3 cut(s) 1056, 1413, 2410
BspMAI CTGCAG 2 cut(s) 599, 2374
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 3 cut(s) 1604, 1975, 2374
BspT107I GGYRCC 3 cut(s) 1054, 1411, 2408
BsrBI CCGCTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 1728
BsrI ACTGG 3 cut(s) 39, 1943, 2403
BssECI CCNNGG 6 cut(s) 510, 1261, 1345, 1483, 1685, 2354
BssMI GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
BssNI GRCGYC 1 cut(s) 1412
BssT1I CCWWGG 1 cut(s) 1685
Bst2UI CCWGG 7 cut(s) 633, 1052, 1313, 1347, 1743, 1985, 2355
Bst4CI ACNGT 6 cut(s) 247, 1038, 1086, 2060, 2341, 2446
Bst6I CTCTTC 2 cut(s) 1151, 1850
BstACI GRCGYC 1 cut(s) 1412
BstAUI TGTACA 1 cut(s) 1728
BstBAI YACGTR 2 cut(s) 1370, 1454
BstC8I GCNNGC 5 cut(s) 1431, 1499, 1528, 1780, 2244
BstDEI CTNAG 7 cut(s) 620, 765, 867, 931, 1149, 1577, 2388
BstDSI CCRYGG 1 cut(s) 1483
BstENI CCTNNNNNAGG 1 cut(s) 1885
BstF5I GGATG 1 cut(s) 1804
BstFNI CGCG 1 cut(s) 470
BstH2I RGCGCY 1 cut(s) 1415
BstHHI GCGC 2 cut(s) 297, 1414
BstKTI GATC 5 cut(s) 877, 1403, 1612, 1983, 2369
BstMAI GTCTC 3 cut(s) 1921, 2067, 2389
BstMBI GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
BstMWI GCNNNNNNNGC 4 cut(s) 544, 1117, 2039, 2350
BstNI CCWGG 7 cut(s) 633, 1052, 1313, 1347, 1743, 1985, 2355
BstNSI RCATGY 7 cut(s) 535, 1826, 1961, 1976, 2053, 2102, 2303
BstSCI CCNGG 9 cut(s) 631, 1050, 1260, 1261, 1311, 1345, 1741, 1983, 2353
BstSFI CTRYAG 4 cut(s) 595, 1882, 2160, 2370
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 8 cut(s) 167, 483, 581, 799, 1283, 2017, 2203, 2206
BstV2I GAAGAC 2 cut(s) 2124, 2258
BstX2I RGATCY 3 cut(s) 1609, 1980, 2366
BstXI CCANNNNNNTGG 1 cut(s) 741
BstYI RGATCY 3 cut(s) 1609, 1980, 2366
Bsu36I CCTNAGG 1 cut(s) 867
BsuI GTATCC 2 cut(s) 1023, 2016
BsuRI GGCC 8 cut(s) 21, 51, 557, 584, 1286, 1530, 1555, 1594
BtgI CCRYGG 1 cut(s) 1483
BtgZI GCGATG 1 cut(s) 2057
BtrI CACGTC 1 cut(s) 2036
BtsCI GGATG 1 cut(s) 1804
BtsIMutI CAGTG 4 cut(s) 363, 1146, 1936, 2410
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 5 cut(s) 1431, 1499, 1528, 1780, 2244
CciI TCATGA 1 cut(s) 549
CfoI GCGC 2 cut(s) 297, 1414
Cfr9I CCCGGG 1 cut(s) 1261
CsiI ACCWGGT 1 cut(s) 1050
CspCI CAANNNNNGTGG 6 cut(s) 1452, 1487, 1756, 1791, 2386, 2421
DdeI CTNAG 7 cut(s) 620, 765, 867, 931, 1149, 1577, 2388
DinI GGCGCC 1 cut(s) 1413
DpnI GATC 5 cut(s) 876, 1402, 1611, 1982, 2368
DpnII GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
DraI TTTAAA 2 cut(s) 859, 2091
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 1151, 1850
EarI CTCTTC 2 cut(s) 1151, 1850
Eco130I CCWWGG 1 cut(s) 1685
Eco47I GGWCC 7 cut(s) 161, 1048, 1352, 1682, 2056, 2141, 2311
Eco81I CCTNAGG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 1261
EcoNI CCTNNNNNAGG 1 cut(s) 1885
EcoO109I RGGNCCY 1 cut(s) 1048
EcoRII CCWGG 7 cut(s) 631, 1050, 1311, 1345, 1741, 1983, 2353
EcoT14I CCWWGG 1 cut(s) 1685
EcoT22I ATGCAT 2 cut(s) 1908, 2320
EgeI GGCGCC 1 cut(s) 1413
EheI GGCGCC 1 cut(s) 1413
ErhI CCWWGG 1 cut(s) 1685
FalI AAGNNNNNCTT 2 cut(s) 1099, 1131
FaqI GGGAC 2 cut(s) 585, 1930
FokI GGATG 1 cut(s) 1811
FspBI CTAG 3 cut(s) 26, 539, 1694
GlaI GCGC 2 cut(s) 296, 1413
GsuI CTGGAG 1 cut(s) 1368
HaeII RGCGCY 1 cut(s) 1415
HaeIII GGCC 8 cut(s) 21, 51, 557, 584, 1286, 1530, 1555, 1594
HapII CCGG 2 cut(s) 1262, 1409
HhaI GCGC 2 cut(s) 297, 1414
Hin1I GRCGYC 1 cut(s) 1412
Hin6I GCGC 2 cut(s) 295, 1412
HinP1I GCGC 2 cut(s) 295, 1412
HincII GTYRAC 3 cut(s) 349, 526, 718
HindII GTYRAC 3 cut(s) 349, 526, 718
HinfI GANTC 8 cut(s) 115, 238, 306, 353, 560, 842, 2228, 2393
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 2 cut(s) 1262, 1409
HphI GGTGA 2 cut(s) 1720, 2249
Hpy166II GTNNAC 8 cut(s) 32, 164, 349, 526, 602, 718, 1543, 2311
Hpy188III TCNNGA 5 cut(s) 373, 550, 869, 878, 2423
Hpy8I GTNNAC 8 cut(s) 32, 164, 349, 526, 602, 718, 1543, 2311
HpyCH4III ACNGT 6 cut(s) 247, 1038, 1086, 2060, 2341, 2446
HpyCH4IV ACGT 5 cut(s) 835, 978, 1369, 1453, 2035
HpyF10VI GCNNNNNNNGC 4 cut(s) 544, 1117, 2039, 2350
HpyF3I CTNAG 7 cut(s) 620, 765, 867, 931, 1149, 1577, 2388
HpySE526I ACGT 5 cut(s) 835, 978, 1369, 1453, 2035
Hsp92I GRCGYC 1 cut(s) 1412
HspAI GCGC 2 cut(s) 295, 1412
KasI GGCGCC 1 cut(s) 1411
KpnI GGTACC 2 cut(s) 1058, 2412
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
Lsp1109I GCAGC 8 cut(s) 167, 483, 581, 799, 1283, 2017, 2203, 2206
LweI GCATC 6 cut(s) 73, 204, 290, 306, 601, 1842
MabI ACCWGGT 1 cut(s) 1050
MaeI CTAG 3 cut(s) 26, 539, 1694
MaeII ACGT 5 cut(s) 835, 978, 1369, 1453, 2035
MaeIII GTNAC 2 cut(s) 1813, 2434
MalI GATC 5 cut(s) 876, 1402, 1611, 1982, 2368
MbiI CCGCTC 1 cut(s) 547
MboI GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 3 cut(s) 1609, 1980, 2366
MhlI GDGCHC 2 cut(s) 372, 1435
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 7 cut(s) 108, 132, 564, 577, 853, 1190, 1559
MluNI TGGCCA 1 cut(s) 21
Mly113I GGCGCC 1 cut(s) 1412
MlyI GAGTC 3 cut(s) 124, 315, 569
MmeI TCCRAC 6 cut(s) 530, 697, 2034, 2173, 2238, 2421
Mox20I TGGCCA 1 cut(s) 21
Mph1103I ATGCAT 2 cut(s) 1908, 2320
MroXI GAANNNNTTC 1 cut(s) 1518
MscI TGGCCA 1 cut(s) 21
MseI TTAA 7 cut(s) 348, 576, 858, 948, 1080, 1791, 2090
MslI CAYNNNNRTG 6 cut(s) 27, 407, 739, 1730, 1901, 1962
Msp20I TGGCCA 1 cut(s) 21
MspI CCGG 2 cut(s) 1262, 1409
MspR9I CCNGG 9 cut(s) 633, 1052, 1262, 1263, 1313, 1347, 1743, 1985, 2355
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 7 cut(s) 633, 1052, 1313, 1347, 1743, 1985, 2355
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 4 cut(s) 544, 1117, 2039, 2350
NarI GGCGCC 1 cut(s) 1412
NciI CCSGG 2 cut(s) 1262, 1263
NdeII GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
NlaIV GGNNCC 3 cut(s) 1056, 1413, 2410
NmeAIII GCCGAG 2 cut(s) 583, 1312
NmuCI GTSAC 2 cut(s) 1813, 2434
NsiI ATGCAT 2 cut(s) 1908, 2320
NspI RCATGY 7 cut(s) 535, 1826, 1961, 1976, 2053, 2102, 2303
PagI TCATGA 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 97
PciI ACATGT 5 cut(s) 531, 1822, 1957, 2049, 2098
PdmI GAANNNNTTC 1 cut(s) 1518
PfeI GAWTC 5 cut(s) 238, 353, 842, 2228, 2393
PflFI GACNNNGTC 1 cut(s) 2014
PflMI CCANNNNNTGG 2 cut(s) 2003, 2320
PfoI TCCNGGA 1 cut(s) 1983
PleI GAGTC 3 cut(s) 123, 314, 568
PluTI GGCGCC 1 cut(s) 1415
PpsI GAGTC 3 cut(s) 123, 314, 568
Ppu21I YACGTR 2 cut(s) 1370, 1454
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 5 cut(s) 531, 1822, 1957, 2049, 2098
Psp5II RGGWCCY 1 cut(s) 1048
Psp6I CCWGG 7 cut(s) 631, 1050, 1311, 1345, 1741, 1983, 2353
PspGI CCWGG 7 cut(s) 631, 1050, 1311, 1345, 1741, 1983, 2353
PspN4I GGNNCC 3 cut(s) 1056, 1413, 2410
PspPPI RGGWCCY 1 cut(s) 1048
PstI CTGCAG 2 cut(s) 599, 2374
PsuI RGATCY 3 cut(s) 1609, 1980, 2366
PsyI GACNNNGTC 1 cut(s) 2014
RseI CAYNNNNRTG 6 cut(s) 27, 407, 739, 1730, 1901, 1962
SaqAI TTAA 7 cut(s) 348, 576, 858, 948, 1080, 1791, 2090
Sau3AI GATC 5 cut(s) 874, 1400, 1609, 1980, 2366
SchI GAGTC 3 cut(s) 124, 315, 569
ScrFI CCNGG 9 cut(s) 633, 1052, 1262, 1263, 1313, 1347, 1743, 1985, 2355
SduI GDGCHC 2 cut(s) 372, 1435
SexAI ACCWGGT 1 cut(s) 1050
SfaNI GCATC 6 cut(s) 73, 204, 290, 306, 601, 1842
SfcI CTRYAG 4 cut(s) 595, 1882, 2160, 2370
SfoI GGCGCC 1 cut(s) 1413
SinI GGWCC 7 cut(s) 161, 1048, 1352, 1682, 2056, 2141, 2311
SmaI CCCGGG 1 cut(s) 1263
SmiI ATTTAAAT 1 cut(s) 2091
SmiMI CAYNNNNRTG 6 cut(s) 27, 407, 739, 1730, 1901, 1962
SmlI CTYRAG 2 cut(s) 371, 1618
SmoI CTYRAG 2 cut(s) 371, 1618
SpeI ACTAGT 1 cut(s) 1693
Sse9I AATT 7 cut(s) 108, 132, 564, 577, 853, 1190, 1559
SsiI CCGC 5 cut(s) 545, 1322, 1870, 2081, 2169
SspDI GGCGCC 1 cut(s) 1411
SspI AATATT 2 cut(s) 1639, 1717
SspMI CTAG 3 cut(s) 26, 539, 1694
StyD4I CCNGG 9 cut(s) 631, 1050, 1260, 1261, 1311, 1345, 1741, 1983, 2353
StyI CCWWGG 1 cut(s) 1685
SwaI ATTTAAAT 1 cut(s) 2091
TaaI ACNGT 6 cut(s) 247, 1038, 1086, 2060, 2341, 2446
TaiI ACGT 5 cut(s) 838, 981, 1372, 1456, 2038
TaqII GACCGA 2 cut(s) 149, 1670
TasI AATT 7 cut(s) 108, 132, 564, 577, 853, 1190, 1559
TatI WGTACW 4 cut(s) 31, 1086, 1728, 1954
TauI GCSGC 2 cut(s) 547, 1873
TfiI GAWTC 5 cut(s) 238, 353, 842, 2228, 2393
Tru1I TTAA 7 cut(s) 348, 576, 858, 948, 1080, 1791, 2090
Tru9I TTAA 7 cut(s) 348, 576, 858, 948, 1080, 1791, 2090
TscAI CASTG 4 cut(s) 363, 1153, 1943, 2410
TseFI GTSAC 2 cut(s) 1813, 2434
TseI GCWGC 8 cut(s) 180, 496, 594, 787, 1271, 2030, 2194, 2216
Tsp45I GTSAC 2 cut(s) 1813, 2434
TspGWI ACGGA 3 cut(s) 402, 821, 1602
TspMI CCCGGG 1 cut(s) 1261
TspRI CASTG 4 cut(s) 363, 1153, 1943, 2410
Tth111I GACNNNGTC 1 cut(s) 2014
Van91I CCANNNNNTGG 2 cut(s) 2003, 2320
VpaK11BI GGWCC 7 cut(s) 161, 1048, 1352, 1682, 2056, 2141, 2311
XagI CCTNNNNNAGG 1 cut(s) 1885
XapI RAATTY 2 cut(s) 132, 1559
XceI RCATGY 7 cut(s) 535, 1826, 1961, 1976, 2053, 2102, 2303
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmaI CCCGGG 1 cut(s) 1261
XmnI GAANNNNTTC 1 cut(s) 1518
XspI CTAG 3 cut(s) 26, 539, 1694
Zsp2I ATGCAT 2 cut(s) 1908, 2320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.