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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 164, 759 |
| AcsI | RAATTY | 4 cut(s) | 254, 387, 778, 809 |
| AcuI | CTGAAG | 1 cut(s) | 802 |
| AfaI | GTAC | 2 cut(s) | 301, 340 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 689 |
| AgsI | TTSAA | 6 cut(s) | 92, 184, 485, 521, 725, 808 |
| AluBI | AGCT | 1 cut(s) | 16 |
| AluI | AGCT | 1 cut(s) | 16 |
| Alw26I | GTCTC | 3 cut(s) | 424, 638, 728 |
| AlwI | GGATC | 2 cut(s) | 164, 759 |
| ApoI | RAATTY | 4 cut(s) | 254, 387, 778, 809 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 296, 328 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 179 |
| AspS9I | GGNCC | 1 cut(s) | 312 |
| AsuHPI | GGTGA | 3 cut(s) | 289, 332, 345 |
| AvaII | GGWCC | 1 cut(s) | 312 |
| BanII | GRGCYC | 1 cut(s) | 589 |
| BccI | CCATC | 2 cut(s) | 556, 683 |
| BclI | TGATCA | 1 cut(s) | 577 |
| BcoDI | GTCTC | 3 cut(s) | 424, 638, 728 |
| BfaI | CTAG | 1 cut(s) | 738 |
| BlpI | GCTNAGC | 1 cut(s) | 149 |
| Bme18I | GGWCC | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 1 cut(s) | 312 |
| BmiI | GGNNCC | 2 cut(s) | 313, 586 |
| BmrI | ACTGGG | 1 cut(s) | 678 |
| BmsI | GCATC | 3 cut(s) | 30, 601, 663 |
| BmuI | ACTGGG | 1 cut(s) | 678 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 149 |
| BpuEI | CTTGAG | 1 cut(s) | 32 |
| BsaI | GGTCTC | 1 cut(s) | 424 |
| BsaJI | CCNNGG | 1 cut(s) | 413 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 434, 464 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 689 |
| Bse1I | ACTGG | 1 cut(s) | 684 |
| Bse3DI | GCAATG | 1 cut(s) | 384 |
| BseDI | CCNNGG | 1 cut(s) | 413 |
| BseGI | GGATG | 1 cut(s) | 807 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 689 |
| BseMI | GCAATG | 1 cut(s) | 384 |
| BseMII | CTCAG | 1 cut(s) | 140 |
| BseNI | ACTGG | 1 cut(s) | 684 |
| BseRI | GAGGAG | 1 cut(s) | 617 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 689 |
| BsmAI | GTCTC | 3 cut(s) | 424, 638, 728 |
| BsmI | GAATGC | 1 cut(s) | 349 |
| Bso31I | GGTCTC | 1 cut(s) | 424 |
| Bsp1286I | GDGCHC | 1 cut(s) | 589 |
| Bsp143I | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 149 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspHI | TCATGA | 1 cut(s) | 501 |
| BspLI | GGNNCC | 2 cut(s) | 313, 586 |
| BspPI | GGATC | 2 cut(s) | 164, 759 |
| BspTNI | GGTCTC | 1 cut(s) | 424 |
| BsrDI | GCAATG | 1 cut(s) | 384 |
| BsrI | ACTGG | 1 cut(s) | 684 |
| BssECI | CCNNGG | 1 cut(s) | 413 |
| BssMI | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| Bst4CI | ACNGT | 7 cut(s) | 180, 193, 271, 299, 631, 660, 771 |
| Bst6I | CTCTTC | 3 cut(s) | 427, 711, 821 |
| BstDEI | CTNAG | 2 cut(s) | 149, 597 |
| BstF5I | GGATG | 1 cut(s) | 807 |
| BstKTI | GATC | 5 cut(s) | 172, 231, 543, 580, 754 |
| BstMAI | GTCTC | 3 cut(s) | 424, 638, 728 |
| BstMBI | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BtsCI | GGATG | 1 cut(s) | 807 |
| BtsIMutI | CAGTG | 3 cut(s) | 627, 691, 767 |
| CciI | TCATGA | 1 cut(s) | 501 |
| Cfr13I | GGNCC | 1 cut(s) | 312 |
| Csp6I | GTAC | 2 cut(s) | 300, 339 |
| CviAII | CATG | 3 cut(s) | 502, 559, 617 |
| CviJI | RGCY | 5 cut(s) | 16, 37, 148, 548, 587 |
| CviKI_1 | RGCY | 5 cut(s) | 16, 37, 148, 548, 587 |
| CviQI | GTAC | 2 cut(s) | 300, 339 |
| DdeI | CTNAG | 2 cut(s) | 149, 597 |
| DpnI | GATC | 5 cut(s) | 171, 230, 542, 579, 753 |
| DpnII | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| Eam1104I | CTCTTC | 3 cut(s) | 427, 711, 821 |
| EarI | CTCTTC | 3 cut(s) | 427, 711, 821 |
| Eco24I | GRGCYC | 1 cut(s) | 589 |
| Eco31I | GGTCTC | 1 cut(s) | 424 |
| Eco47I | GGWCC | 1 cut(s) | 312 |
| Eco57I | CTGAAG | 1 cut(s) | 802 |
| EcoT22I | ATGCAT | 2 cut(s) | 458, 678 |
| EcoT38I | GRGCYC | 1 cut(s) | 589 |
| FaeI | CATG | 3 cut(s) | 505, 562, 620 |
| FaiI | YATR | 9 cut(s) | 126, 155, 454, 458, 475, 503, 560, 618, 678 |
| FatI | CATG | 3 cut(s) | 501, 558, 616 |
| FbaI | TGATCA | 1 cut(s) | 577 |
| FokI | GGATG | 1 cut(s) | 814 |
| FriOI | GRGCYC | 1 cut(s) | 589 |
| FspBI | CTAG | 1 cut(s) | 738 |
| Hin1II | CATG | 3 cut(s) | 505, 562, 620 |
| HincII | GTYRAC | 1 cut(s) | 663 |
| HindII | GTYRAC | 1 cut(s) | 663 |
| HinfI | GANTC | 4 cut(s) | 223, 323, 443, 593 |
| HpaI | GTTAAC | 1 cut(s) | 663 |
| HphI | GGTGA | 3 cut(s) | 289, 332, 345 |
| Hpy166II | GTNNAC | 1 cut(s) | 663 |
| Hpy188I | TCNGA | 8 cut(s) | 54, 174, 228, 295, 328, 385, 406, 414 |
| Hpy188III | TCNNGA | 3 cut(s) | 232, 502, 849 |
| Hpy8I | GTNNAC | 1 cut(s) | 663 |
| Hpy99I | CGWCG | 1 cut(s) | 320 |
| HpyAV | CCTTC | 2 cut(s) | 27, 499 |
| HpyCH4III | ACNGT | 7 cut(s) | 180, 193, 271, 299, 631, 660, 771 |
| HpyCH4IV | ACGT | 2 cut(s) | 28, 694 |
| HpyCH4V | TGCA | 4 cut(s) | 200, 349, 456, 676 |
| HpyF3I | CTNAG | 2 cut(s) | 149, 597 |
| HpySE526I | ACGT | 2 cut(s) | 28, 694 |
| Hsp92II | CATG | 3 cut(s) | 505, 562, 620 |
| Ksp22I | TGATCA | 1 cut(s) | 577 |
| KspAI | GTTAAC | 1 cut(s) | 663 |
| Kzo9I | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| LmnI | GCTCC | 1 cut(s) | 584 |
| LpnPI | CCDG | 3 cut(s) | 48, 57, 697 |
| LweI | GCATC | 3 cut(s) | 30, 601, 663 |
| MaeI | CTAG | 1 cut(s) | 738 |
| MaeII | ACGT | 2 cut(s) | 28, 694 |
| MaeIII | GTNAC | 3 cut(s) | 6, 130, 277 |
| MalI | GATC | 5 cut(s) | 171, 230, 542, 579, 753 |
| MboI | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| MboII | GAAGA | 6 cut(s) | 352, 414, 712, 728, 808, 840 |
| MhlI | GDGCHC | 1 cut(s) | 589 |
| MluCI | AATT | 6 cut(s) | 67, 254, 387, 488, 778, 809 |
| MlyI | GAGTC | 2 cut(s) | 232, 452 |
| MmeI | TCCRAC | 2 cut(s) | 411, 677 |
| MnlI | CCTC | 6 cut(s) | 207, 228, 358, 408, 538, 595 |
| Mph1103I | ATGCAT | 2 cut(s) | 458, 678 |
| MroXI | GAANNNNTTC | 1 cut(s) | 179 |
| MseI | TTAA | 7 cut(s) | 24, 57, 102, 258, 372, 662, 797 |
| MslI | CAYNNNNRTG | 1 cut(s) | 621 |
| Mva1269I | GAATGC | 1 cut(s) | 349 |
| NdeII | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| NlaIII | CATG | 3 cut(s) | 505, 562, 620 |
| NlaIV | GGNNCC | 2 cut(s) | 313, 586 |
| NmuCI | GTSAC | 3 cut(s) | 6, 130, 277 |
| NsiI | ATGCAT | 2 cut(s) | 458, 678 |
| PagI | TCATGA | 1 cut(s) | 501 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 324 |
| PctI | GAATGC | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 179 |
| PfeI | GAWTC | 2 cut(s) | 323, 593 |
| PleI | GAGTC | 2 cut(s) | 231, 451 |
| PpsI | GAGTC | 2 cut(s) | 231, 451 |
| PspN4I | GGNNCC | 2 cut(s) | 313, 586 |
| PspPI | GGNCC | 1 cut(s) | 312 |
| RsaI | GTAC | 2 cut(s) | 301, 340 |
| RsaNI | GTAC | 2 cut(s) | 300, 339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 621 |
| SaqAI | TTAA | 7 cut(s) | 24, 57, 102, 258, 372, 662, 797 |
| Sau3AI | GATC | 5 cut(s) | 169, 228, 540, 577, 751 |
| Sau96I | GGNCC | 1 cut(s) | 312 |
| SchI | GAGTC | 2 cut(s) | 232, 452 |
| SduI | GDGCHC | 1 cut(s) | 589 |
| SetI | ASST | 9 cut(s) | 18, 24, 31, 145, 218, 279, 358, 510, 697 |
| SfaNI | GCATC | 3 cut(s) | 30, 601, 663 |
| SinI | GGWCC | 1 cut(s) | 312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 621 |
| SmlI | CTYRAG | 1 cut(s) | 11 |
| SmoI | CTYRAG | 1 cut(s) | 11 |
| Sse9I | AATT | 6 cut(s) | 67, 254, 387, 488, 778, 809 |
| SspMI | CTAG | 1 cut(s) | 738 |
| TaaI | ACNGT | 7 cut(s) | 180, 193, 271, 299, 631, 660, 771 |
| TaiI | ACGT | 2 cut(s) | 31, 697 |
| TaqI | TCGA | 4 cut(s) | 231, 363, 543, 773 |
| TasI | AATT | 6 cut(s) | 67, 254, 387, 488, 778, 809 |
| TatI | WGTACW | 1 cut(s) | 338 |
| TfiI | GAWTC | 2 cut(s) | 323, 593 |
| Tru1I | TTAA | 7 cut(s) | 24, 57, 102, 258, 372, 662, 797 |
| Tru9I | TTAA | 7 cut(s) | 24, 57, 102, 258, 372, 662, 797 |
| TscAI | CASTG | 3 cut(s) | 634, 691, 774 |
| TseFI | GTSAC | 3 cut(s) | 6, 130, 277 |
| Tsp45I | GTSAC | 3 cut(s) | 6, 130, 277 |
| TspDTI | ATGAA | 4 cut(s) | 60, 414, 518, 729 |
| TspGWI | ACGGA | 3 cut(s) | 304, 597, 802 |
| TspRI | CASTG | 3 cut(s) | 634, 691, 774 |
| VpaK11BI | GGWCC | 1 cut(s) | 312 |
| XapI | RAATTY | 4 cut(s) | 254, 387, 778, 809 |
| XmnI | GAANNNNTTC | 1 cut(s) | 179 |
| XspI | CTAG | 1 cut(s) | 738 |
| Zsp2I | ATGCAT | 2 cut(s) | 458, 678 |