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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1029 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1112 |
| AciI | CCGC | 1 cut(s) | 1141 |
| AclWI | GGATC | 1 cut(s) | 771 |
| AcsI | RAATTY | 1 cut(s) | 596 |
| AcvI | CACGTG | 1 cut(s) | 749 |
| AfaI | GTAC | 4 cut(s) | 69, 808, 879, 913 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 477, 1112 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 6 cut(s) | 41, 209, 217, 233, 929, 1090 |
| AjiI | CACGTC | 1 cut(s) | 778 |
| AjnI | CCWGG | 1 cut(s) | 52 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 102, 134 |
| AluBI | AGCT | 6 cut(s) | 160, 396, 457, 729, 989, 1084 |
| AluI | AGCT | 6 cut(s) | 160, 396, 457, 729, 989, 1084 |
| Alw21I | GWGCWC | 1 cut(s) | 459 |
| Alw26I | GTCTC | 2 cut(s) | 275, 768 |
| AlwI | GGATC | 1 cut(s) | 771 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApeKI | GCWGC | 4 cut(s) | 490, 790, 977, 980 |
| ApoI | RAATTY | 1 cut(s) | 596 |
| AseI | ATTAAT | 1 cut(s) | 87 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 933 |
| AspS9I | GGNCC | 3 cut(s) | 56, 428, 904 |
| AsuHPI | GGTGA | 3 cut(s) | 233, 390, 1085 |
| AvaII | GGWCC | 3 cut(s) | 56, 428, 904 |
| BanII | GRGCYC | 1 cut(s) | 459 |
| BbrPI | CACGTG | 1 cut(s) | 749 |
| BbsI | GAAGAC | 1 cut(s) | 633 |
| Bbv12I | GWGCWC | 1 cut(s) | 459 |
| BbvI | GCAGC | 4 cut(s) | 502, 777, 989, 992 |
| BccI | CCATC | 4 cut(s) | 7, 404, 775, 966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 972, 1006 |
| BciT130I | CCWGG | 1 cut(s) | 54 |
| BcoDI | GTCTC | 2 cut(s) | 275, 768 |
| BfaI | CTAG | 1 cut(s) | 1168 |
| BfmI | CTRYAG | 1 cut(s) | 791 |
| BisI | GCNGC | 5 cut(s) | 491, 791, 978, 981, 1142 |
| BlsI | GCNGC | 5 cut(s) | 492, 792, 979, 982, 1143 |
| Bme1390I | CCNGG | 1 cut(s) | 54 |
| Bme18I | GGWCC | 3 cut(s) | 56, 428, 904 |
| BmgBI | CACGTC | 1 cut(s) | 778 |
| BmgT120I | GGNCC | 3 cut(s) | 56, 428, 904 |
| BmiI | GGNNCC | 3 cut(s) | 153, 429, 430 |
| BmrFI | CCNGG | 1 cut(s) | 54 |
| BmsI | GCATC | 1 cut(s) | 984 |
| BpiI | GAAGAC | 1 cut(s) | 633 |
| BpmI | CTGGAG | 1 cut(s) | 182 |
| BsaAI | YACGTR | 1 cut(s) | 749 |
| BsaBI | GATNNNNATC | 1 cut(s) | 643 |
| BsaJI | CCNNGG | 1 cut(s) | 944 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 352, 382 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 477, 1112 |
| Bse1I | ACTGG | 3 cut(s) | 401, 679, 1117 |
| Bse3DI | GCAATG | 2 cut(s) | 207, 792 |
| Bse8I | GATNNNNATC | 1 cut(s) | 643 |
| BseBI | CCWGG | 1 cut(s) | 54 |
| BseDI | CCNNGG | 1 cut(s) | 944 |
| BseGI | GGATG | 5 cut(s) | 100, 340, 415, 644, 940 |
| BseJI | GATNNNNATC | 1 cut(s) | 643 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 477, 1112 |
| BseMI | GCAATG | 2 cut(s) | 207, 792 |
| BseMII | CTCAG | 1 cut(s) | 567 |
| BseNI | ACTGG | 3 cut(s) | 401, 679, 1117 |
| BseRI | GAGGAG | 3 cut(s) | 32, 179, 467 |
| BseXI | GCAGC | 4 cut(s) | 502, 777, 989, 992 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BsiHKAI | GWGCWC | 1 cut(s) | 459 |
| BslFI | GGGAC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 477, 1112 |
| BsmAI | GTCTC | 2 cut(s) | 275, 768 |
| BsmBI | CGTCTC | 1 cut(s) | 768 |
| BsmFI | GGGAC | 1 cut(s) | 441 |
| BsmI | GAATGC | 1 cut(s) | 586 |
| BsnI | GGCC | 1 cut(s) | 275 |
| Bsp1286I | GDGCHC | 1 cut(s) | 459 |
| Bsp143I | GATC | 2 cut(s) | 763, 1147 |
| BspACI | CCGC | 1 cut(s) | 1141 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 1 cut(s) | 568 |
| BspHI | TCATGA | 2 cut(s) | 9, 591 |
| BspLI | GGNNCC | 3 cut(s) | 153, 429, 430 |
| BspMAI | CTGCAG | 1 cut(s) | 795 |
| BspPI | GGATC | 1 cut(s) | 771 |
| BspQI | GCTCTTC | 1 cut(s) | 1001 |
| BsrDI | GCAATG | 2 cut(s) | 207, 792 |
| BsrI | ACTGG | 3 cut(s) | 401, 679, 1117 |
| BssECI | CCNNGG | 1 cut(s) | 944 |
| BssMI | GATC | 2 cut(s) | 763, 1147 |
| BssT1I | CCWWGG | 1 cut(s) | 944 |
| Bst2UI | CCWGG | 1 cut(s) | 54 |
| Bst4CI | ACNGT | 3 cut(s) | 139, 799, 1136 |
| Bst6I | CTCTTC | 4 cut(s) | 36, 510, 1001, 1107 |
| BstBAI | YACGTR | 1 cut(s) | 749 |
| BstDEI | CTNAG | 3 cut(s) | 190, 576, 1158 |
| BstF5I | GGATG | 5 cut(s) | 100, 340, 415, 644, 940 |
| BstKTI | GATC | 2 cut(s) | 766, 1150 |
| BstMAI | GTCTC | 2 cut(s) | 275, 768 |
| BstMBI | GATC | 2 cut(s) | 763, 1147 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 986 |
| BstNI | CCWGG | 1 cut(s) | 54 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| BstSCI | CCNGG | 1 cut(s) | 52 |
| BstSFI | CTRYAG | 1 cut(s) | 791 |
| BstV1I | GCAGC | 4 cut(s) | 502, 777, 989, 992 |
| BstV2I | GAAGAC | 1 cut(s) | 633 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 91 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtrI | CACGTC | 1 cut(s) | 778 |
| BtsCI | GGATG | 5 cut(s) | 100, 340, 415, 644, 940 |
| BtsIMutI | CAGTG | 1 cut(s) | 408 |
| CciI | TCATGA | 2 cut(s) | 9, 591 |
| Cfr13I | GGNCC | 3 cut(s) | 56, 428, 904 |
| Csp6I | GTAC | 4 cut(s) | 68, 807, 878, 912 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 303, 338 |
| CviQI | GTAC | 4 cut(s) | 68, 807, 878, 912 |
| DdeI | CTNAG | 3 cut(s) | 190, 576, 1158 |
| DpnI | GATC | 2 cut(s) | 765, 1149 |
| DpnII | GATC | 2 cut(s) | 763, 1147 |
| DraI | TTTAAA | 1 cut(s) | 270 |
| Eam1104I | CTCTTC | 4 cut(s) | 36, 510, 1001, 1107 |
| EarI | CTCTTC | 4 cut(s) | 36, 510, 1001, 1107 |
| Ecl136II | GAGCTC | 1 cut(s) | 457 |
| Eco130I | CCWWGG | 1 cut(s) | 944 |
| Eco24I | GRGCYC | 1 cut(s) | 459 |
| Eco47I | GGWCC | 3 cut(s) | 56, 428, 904 |
| Eco53kI | GAGCTC | 1 cut(s) | 457 |
| Eco72I | CACGTG | 1 cut(s) | 749 |
| EcoICRI | GAGCTC | 1 cut(s) | 457 |
| EcoO109I | RGGNCCY | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 944 |
| EcoT38I | GRGCYC | 1 cut(s) | 459 |
| ErhI | CCWWGG | 1 cut(s) | 944 |
| Esp3I | CGTCTC | 1 cut(s) | 768 |
| FaqI | GGGAC | 1 cut(s) | 441 |
| Fnu4HI | GCNGC | 5 cut(s) | 491, 791, 978, 981, 1142 |
| FokI | GGATG | 5 cut(s) | 107, 347, 422, 631, 927 |
| FriOI | GRGCYC | 1 cut(s) | 459 |
| Fsp4HI | GCNGC | 5 cut(s) | 491, 791, 978, 981, 1142 |
| FspBI | CTAG | 1 cut(s) | 1168 |
| GluI | GCNGC | 5 cut(s) | 491, 791, 978, 981, 1142 |
| GsuI | CTGGAG | 1 cut(s) | 182 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| HindIII | AAGCTT | 1 cut(s) | 987 |
| HinfI | GANTC | 5 cut(s) | 44, 80, 283, 298, 502 |
| HphI | GGTGA | 3 cut(s) | 233, 390, 1085 |
| Hpy166II | GTNNAC | 2 cut(s) | 353, 533 |
| Hpy188I | TCNGA | 2 cut(s) | 516, 901 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 371, 592, 700 |
| Hpy8I | GTNNAC | 2 cut(s) | 353, 533 |
| HpyAV | CCTTC | 1 cut(s) | 706 |
| HpyCH4III | ACNGT | 3 cut(s) | 139, 799, 1136 |
| HpyCH4IV | ACGT | 4 cut(s) | 196, 748, 777, 1164 |
| HpyCH4V | TGCA | 9 cut(s) | 147, 200, 228, 554, 584, 654, 693, 770, 793 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 986 |
| HpyF3I | CTNAG | 3 cut(s) | 190, 576, 1158 |
| HpySE526I | ACGT | 4 cut(s) | 196, 748, 777, 1164 |
| KflI | GGGWCCC | 1 cut(s) | 428 |
| Kzo9I | GATC | 2 cut(s) | 763, 1147 |
| LguI | GCTCTTC | 1 cut(s) | 1001 |
| LmnI | GCTCC | 3 cut(s) | 19, 454, 974 |
| Lsp1109I | GCAGC | 4 cut(s) | 502, 777, 989, 992 |
| LweI | GCATC | 1 cut(s) | 984 |
| MaeI | CTAG | 1 cut(s) | 1168 |
| MaeII | ACGT | 4 cut(s) | 196, 748, 777, 1164 |
| MaeIII | GTNAC | 3 cut(s) | 310, 472, 744 |
| MalI | GATC | 2 cut(s) | 765, 1149 |
| MboI | GATC | 2 cut(s) | 763, 1147 |
| MhlI | GDGCHC | 1 cut(s) | 459 |
| MluCI | AATT | 9 cut(s) | 88, 117, 237, 258, 386, 546, 596, 890, 930 |
| MlyI | GAGTC | 4 cut(s) | 53, 277, 307, 496 |
| MmeI | TCCRAC | 1 cut(s) | 855 |
| MroXI | GAANNNNTTC | 1 cut(s) | 933 |
| MseI | TTAA | 7 cut(s) | 87, 170, 186, 269, 380, 483, 861 |
| MspR9I | CCNGG | 1 cut(s) | 54 |
| Mva1269I | GAATGC | 1 cut(s) | 586 |
| MvaI | CCWGG | 1 cut(s) | 54 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 986 |
| NdeII | GATC | 2 cut(s) | 763, 1147 |
| NlaIV | GGNNCC | 3 cut(s) | 153, 429, 430 |
| NmuCI | GTSAC | 2 cut(s) | 472, 744 |
| NspI | RCATGY | 1 cut(s) | 182 |
| PagI | TCATGA | 2 cut(s) | 9, 591 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PciSI | GCTCTTC | 1 cut(s) | 1001 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 754, 1132 |
| PctI | GAATGC | 1 cut(s) | 586 |
| PdmI | GAANNNNTTC | 1 cut(s) | 933 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1112 |
| PkrI | GCNGC | 5 cut(s) | 492, 792, 979, 982, 1143 |
| PleI | GAGTC | 4 cut(s) | 52, 277, 306, 496 |
| PmaCI | CACGTG | 1 cut(s) | 749 |
| PmlI | CACGTG | 1 cut(s) | 749 |
| PpsI | GAGTC | 4 cut(s) | 52, 277, 306, 496 |
| Ppu21I | YACGTR | 1 cut(s) | 749 |
| PpuMI | RGGWCCY | 1 cut(s) | 428 |
| PscI | ACATGT | 1 cut(s) | 178 |
| PshBI | ATTAAT | 1 cut(s) | 87 |
| PsiI | TTATAA | 1 cut(s) | 1029 |
| Psp124BI | GAGCTC | 1 cut(s) | 459 |
| Psp5II | RGGWCCY | 1 cut(s) | 428 |
| Psp6I | CCWGG | 1 cut(s) | 52 |
| PspCI | CACGTG | 1 cut(s) | 749 |
| PspGI | CCWGG | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 3 cut(s) | 153, 429, 430 |
| PspPI | GGNCC | 3 cut(s) | 56, 428, 904 |
| PspPPI | RGGWCCY | 1 cut(s) | 428 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 295, 327 |
| PstI | CTGCAG | 1 cut(s) | 795 |
| RsaI | GTAC | 4 cut(s) | 69, 808, 879, 913 |
| RsaNI | GTAC | 4 cut(s) | 68, 807, 878, 912 |
| SacI | GAGCTC | 1 cut(s) | 459 |
| SapI | GCTCTTC | 1 cut(s) | 1001 |
| SaqAI | TTAA | 7 cut(s) | 87, 170, 186, 269, 380, 483, 861 |
| SatI | GCNGC | 5 cut(s) | 491, 791, 978, 981, 1142 |
| Sau3AI | GATC | 2 cut(s) | 763, 1147 |
| Sau96I | GGNCC | 3 cut(s) | 56, 428, 904 |
| SchI | GAGTC | 4 cut(s) | 53, 277, 307, 496 |
| ScrFI | CCNGG | 1 cut(s) | 54 |
| SduI | GDGCHC | 1 cut(s) | 459 |
| SfaNI | GCATC | 1 cut(s) | 984 |
| SfcI | CTRYAG | 1 cut(s) | 791 |
| SinI | GGWCC | 3 cut(s) | 56, 428, 904 |
| Sse9I | AATT | 9 cut(s) | 88, 117, 237, 258, 386, 546, 596, 890, 930 |
| SsiI | CCGC | 1 cut(s) | 1141 |
| SspI | AATATT | 3 cut(s) | 213, 866, 966 |
| SspMI | CTAG | 1 cut(s) | 1168 |
| SstI | GAGCTC | 1 cut(s) | 459 |
| StyD4I | CCNGG | 1 cut(s) | 52 |
| StyI | CCWWGG | 1 cut(s) | 944 |
| TaaI | ACNGT | 3 cut(s) | 139, 799, 1136 |
| TaiI | ACGT | 4 cut(s) | 199, 751, 780, 1167 |
| TaqI | TCGA | 3 cut(s) | 301, 916, 992 |
| TasI | AATT | 9 cut(s) | 88, 117, 237, 258, 386, 546, 596, 890, 930 |
| TatI | WGTACW | 1 cut(s) | 877 |
| TauI | GCSGC | 1 cut(s) | 1144 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| Tru1I | TTAA | 7 cut(s) | 87, 170, 186, 269, 380, 483, 861 |
| Tru9I | TTAA | 7 cut(s) | 87, 170, 186, 269, 380, 483, 861 |
| TscAI | CASTG | 1 cut(s) | 408 |
| TseFI | GTSAC | 2 cut(s) | 472, 744 |
| TseI | GCWGC | 4 cut(s) | 490, 790, 977, 980 |
| Tsp45I | GTSAC | 2 cut(s) | 472, 744 |
| TspDTI | ATGAA | 5 cut(s) | 608, 633, 884, 929, 966 |
| TspRI | CASTG | 1 cut(s) | 408 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1112 |
| VpaK11BI | GGWCC | 3 cut(s) | 56, 428, 904 |
| VspI | ATTAAT | 1 cut(s) | 87 |
| XapI | RAATTY | 1 cut(s) | 596 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 1 cut(s) | 933 |
| XspI | CTAG | 1 cut(s) | 1168 |