protein desumoylation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_C48 | PF02902 | 549 - 642 | 2.9e-07 | Ulp1 protease family, C-terminal catalytic domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1561 |
| Acc36I | ACCTGC | 1 cut(s) | 1561 |
| Acc65I | GGTACC | 1 cut(s) | 1929 |
| AccB1I | GGYRCC | 2 cut(s) | 1929, 2068 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 292, 803 |
| AccI | GTMKAC | 1 cut(s) | 981 |
| AccII | CGCG | 1 cut(s) | 715 |
| AciI | CCGC | 6 cut(s) | 715, 873, 1065, 1362, 1562, 2025 |
| AclWI | GGATC | 6 cut(s) | 599, 626, 639, 944, 949, 1513 |
| AcoI | YGGCCR | 2 cut(s) | 75, 1050 |
| AcsI | RAATTY | 1 cut(s) | 301 |
| AcuI | CTGAAG | 4 cut(s) | 41, 160, 470, 1098 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AfaI | GTAC | 3 cut(s) | 526, 927, 1931 |
| AfeI | AGCGCT | 1 cut(s) | 1925 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 292, 589, 590, 803, 959, 960, 2108, 2131 |
| AflII | CTTAAG | 1 cut(s) | 626 |
| AjiI | CACGTC | 1 cut(s) | 822 |
| AjnI | CCWGG | 3 cut(s) | 705, 762, 1804 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 219, 251 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1502, 1534 |
| AluBI | AGCT | 8 cut(s) | 19, 215, 460, 549, 682, 1178, 1437, 2054 |
| AluI | AGCT | 8 cut(s) | 19, 215, 460, 549, 682, 1178, 1437, 2054 |
| Alw26I | GTCTC | 2 cut(s) | 1586, 1970 |
| AlwI | GGATC | 6 cut(s) | 599, 626, 639, 944, 949, 1513 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 938, 1304 |
| Ama87I | CYCGRG | 1 cut(s) | 1945 |
| Aor51HI | AGCGCT | 1 cut(s) | 1925 |
| AoxI | GGCC | 3 cut(s) | 75, 708, 1050 |
| ApeKI | GCWGC | 5 cut(s) | 215, 1162, 1484, 1751, 2027 |
| ApoI | RAATTY | 1 cut(s) | 301 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 366, 911 |
| Asp718I | GGTACC | 1 cut(s) | 1929 |
| AspA2I | CCTAGG | 1 cut(s) | 1859 |
| AspLEI | GCGC | 3 cut(s) | 375, 1926, 2142 |
| AspS9I | GGNCC | 2 cut(s) | 430, 1951 |
| AsuC2I | CCSGG | 3 cut(s) | 1295, 1736, 2132 |
| AsuHPI | GGTGA | 2 cut(s) | 1794, 1979 |
| AvaI | CYCGRG | 1 cut(s) | 1945 |
| AvaII | GGWCC | 2 cut(s) | 430, 1951 |
| AvrII | CCTAGG | 1 cut(s) | 1859 |
| BalI | TGGCCA | 1 cut(s) | 77 |
| BamHI | GGATCC | 1 cut(s) | 631 |
| BanI | GGYRCC | 2 cut(s) | 1929, 2068 |
| BauI | CACGAG | 2 cut(s) | 1400, 1583 |
| BbsI | GAAGAC | 4 cut(s) | 12, 183, 369, 1107 |
| BbvI | GCAGC | 5 cut(s) | 202, 1174, 1471, 1738, 2014 |
| BccI | CCATC | 4 cut(s) | 386, 1133, 1416, 1597 |
| BceAI | ACGGC | 1 cut(s) | 1065 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 236, 270, 1743, 1777 |
| BciT130I | CCWGG | 3 cut(s) | 707, 764, 1806 |
| BciVI | GTATCC | 1 cut(s) | 1854 |
| BcnI | CCSGG | 3 cut(s) | 1295, 1736, 2132 |
| BcoDI | GTCTC | 2 cut(s) | 1586, 1970 |
| BfaI | CTAG | 3 cut(s) | 1395, 1860, 2136 |
| BfmI | CTRYAG | 3 cut(s) | 975, 2028, 2106 |
| BfoI | RGCGCY | 2 cut(s) | 1927, 2143 |
| BfrI | CTTAAG | 1 cut(s) | 626 |
| BfuAI | ACCTGC | 1 cut(s) | 1561 |
| BfuI | GTATCC | 1 cut(s) | 1854 |
| BisI | GCNGC | 7 cut(s) | 216, 1066, 1163, 1485, 1752, 2025, 2028 |
| BlnI | CCTAGG | 1 cut(s) | 1859 |
| BlpI | GCTNAGC | 1 cut(s) | 1179 |
| BlsI | GCNGC | 7 cut(s) | 217, 1067, 1164, 1486, 1753, 2026, 2029 |
| BmcAI | AGTACT | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 6 cut(s) | 707, 764, 1295, 1736, 1806, 2132 |
| Bme18I | GGWCC | 2 cut(s) | 430, 1951 |
| BmeT110I | CYCGRG | 1 cut(s) | 1945 |
| BmgBI | CACGTC | 1 cut(s) | 822 |
| BmgT120I | GGNCC | 2 cut(s) | 430, 1951 |
| BmiI | GGNNCC | 6 cut(s) | 344, 432, 633, 1931, 1952, 2070 |
| BmrFI | CCNGG | 6 cut(s) | 707, 764, 1295, 1736, 1806, 2132 |
| BmrI | ACTGGG | 5 cut(s) | 452, 578, 667, 1622, 1674 |
| BmsI | GCATC | 6 cut(s) | 333, 1188, 1231, 1241, 1763, 1873 |
| BmuI | ACTGGG | 5 cut(s) | 452, 578, 667, 1622, 1674 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1371 |
| BpiI | GAAGAC | 4 cut(s) | 12, 183, 369, 1107 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1548 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1179 |
| BpuEI | CTTGAG | 2 cut(s) | 122, 1994 |
| BpuMI | CCSGG | 3 cut(s) | 1295, 1736, 2132 |
| BsaBI | GATNNNNATC | 1 cut(s) | 408 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaI | GGTCTC | 1 cut(s) | 1586 |
| BsaJI | CCNNGG | 5 cut(s) | 426, 642, 1847, 1859, 1933 |
| BsaWI | WCCGGW | 1 cut(s) | 113 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 292, 589, 590, 803, 959, 960, 2108, 2131 |
| Bse3DI | GCAATG | 3 cut(s) | 1390, 1457, 1694 |
| Bse8I | GATNNNNATC | 1 cut(s) | 408 |
| BseBI | CCWGG | 3 cut(s) | 707, 764, 1806 |
| BseDI | CCNNGG | 5 cut(s) | 426, 642, 1847, 1859, 1933 |
| BseGI | GGATG | 5 cut(s) | 397, 772, 1246, 1256, 1864 |
| BseJI | GATNNNNATC | 1 cut(s) | 408 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 292, 589, 590, 803, 959, 960, 2108, 2131 |
| BseMI | GCAATG | 3 cut(s) | 1390, 1457, 1694 |
| BseMII | CTCAG | 6 cut(s) | 333, 488, 1296, 1551, 1704, 1896 |
| BseRI | GAGGAG | 1 cut(s) | 1447 |
| BseXI | GCAGC | 5 cut(s) | 202, 1174, 1471, 1738, 2014 |
| BseYI | CCCAGC | 1 cut(s) | 953 |
| BsgI | GTGCAG | 2 cut(s) | 230, 1589 |
| Bsh1236I | CGCG | 1 cut(s) | 715 |
| BshFI | GGCC | 3 cut(s) | 77, 710, 1052 |
| BshNI | GGYRCC | 2 cut(s) | 1929, 2068 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1945 |
| BsiSI | CCGG | 4 cut(s) | 114, 1295, 1735, 2131 |
| BslFI | GGGAC | 6 cut(s) | 949, 1426, 1439, 1715, 1964, 2024 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 292, 589, 590, 803, 959, 960, 2108, 2131 |
| BsmAI | GTCTC | 2 cut(s) | 1586, 1970 |
| BsmFI | GGGAC | 6 cut(s) | 949, 1426, 1439, 1715, 1964, 2024 |
| BsmI | GAATGC | 2 cut(s) | 671, 1809 |
| BsnI | GGCC | 3 cut(s) | 77, 710, 1052 |
| Bso31I | GGTCTC | 1 cut(s) | 1586 |
| BsoBI | CYCGRG | 1 cut(s) | 1945 |
| Bsp143I | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1179 |
| BspACI | CCGC | 6 cut(s) | 715, 873, 1065, 1362, 1562, 2025 |
| BspANI | GGCC | 3 cut(s) | 77, 710, 1052 |
| BspCNI | CTCAG | 6 cut(s) | 332, 489, 1297, 1550, 1705, 1895 |
| BspFNI | CGCG | 1 cut(s) | 715 |
| BspLI | GGNNCC | 6 cut(s) | 344, 432, 633, 1931, 1952, 2070 |
| BspMAI | CTGCAG | 2 cut(s) | 2032, 2110 |
| BspMI | ACCTGC | 1 cut(s) | 1561 |
| BspPI | GGATC | 6 cut(s) | 599, 626, 639, 944, 949, 1513 |
| BspQI | GCTCTTC | 2 cut(s) | 446, 1152 |
| BspT107I | GGYRCC | 2 cut(s) | 1929, 2068 |
| BspTI | CTTAAG | 1 cut(s) | 626 |
| BspTNI | GGTCTC | 1 cut(s) | 1586 |
| BsrDI | GCAATG | 3 cut(s) | 1390, 1457, 1694 |
| BssECI | CCNNGG | 5 cut(s) | 426, 642, 1847, 1859, 1933 |
| BssMI | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| BssSI | CACGAG | 2 cut(s) | 1400, 1583 |
| BssT1I | CCWWGG | 3 cut(s) | 642, 1859, 1933 |
| Bst2BI | CACGAG | 2 cut(s) | 1400, 1583 |
| Bst2UI | CCWGG | 3 cut(s) | 707, 764, 1806 |
| Bst6I | CTCTTC | 3 cut(s) | 446, 836, 1152 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstAFI | CTTAAG | 1 cut(s) | 626 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 668 |
| BstC8I | GCNNGC | 3 cut(s) | 458, 1907, 2110 |
| BstDEI | CTNAG | 8 cut(s) | 319, 497, 1179, 1305, 1537, 1548, 1713, 1882 |
| BstDSI | CCRYGG | 1 cut(s) | 1847 |
| BstEII | GGTNACC | 1 cut(s) | 1357 |
| BstF5I | GGATG | 5 cut(s) | 397, 772, 1246, 1256, 1864 |
| BstFNI | CGCG | 1 cut(s) | 715 |
| BstH2I | RGCGCY | 2 cut(s) | 1927, 2143 |
| BstHHI | GCGC | 3 cut(s) | 375, 1926, 2142 |
| BstKTI | GATC | 6 cut(s) | 607, 634, 944, 952, 1501, 1508 |
| BstMAI | GTCTC | 2 cut(s) | 1586, 1970 |
| BstMBI | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 381, 560, 668 |
| BstNI | CCWGG | 3 cut(s) | 707, 764, 1806 |
| BstNSI | RCATGY | 1 cut(s) | 1909 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1371 |
| BstPI | GGTNACC | 1 cut(s) | 1357 |
| BstSCI | CCNGG | 6 cut(s) | 705, 762, 1293, 1734, 1804, 2130 |
| BstSFI | CTRYAG | 3 cut(s) | 975, 2028, 2106 |
| BstUI | CGCG | 1 cut(s) | 715 |
| BstV1I | GCAGC | 5 cut(s) | 202, 1174, 1471, 1738, 2014 |
| BstV2I | GAAGAC | 4 cut(s) | 12, 183, 369, 1107 |
| BstX2I | RGATCY | 1 cut(s) | 631 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 643, 1060 |
| BstYI | RGATCY | 1 cut(s) | 631 |
| BsuI | GTATCC | 1 cut(s) | 1854 |
| BsuRI | GGCC | 3 cut(s) | 77, 710, 1052 |
| BtgI | CCRYGG | 1 cut(s) | 1847 |
| BtgZI | GCGATG | 1 cut(s) | 417 |
| BtrI | CACGTC | 1 cut(s) | 822 |
| BtsCI | GGATG | 5 cut(s) | 397, 772, 1246, 1256, 1864 |
| BtsI | GCAGTG | 2 cut(s) | 1267, 1305 |
| BtsIMutI | CAGTG | 6 cut(s) | 278, 819, 1230, 1267, 1305, 1986 |
| BveI | ACCTGC | 1 cut(s) | 1561 |
| Cac8I | GCNNGC | 3 cut(s) | 458, 1907, 2110 |
| CaiI | CAGNNNCTG | 2 cut(s) | 938, 1304 |
| CfoI | GCGC | 3 cut(s) | 375, 1926, 2142 |
| Cfr13I | GGNCC | 2 cut(s) | 430, 1951 |
| CseI | GACGC | 1 cut(s) | 373 |
| Csp6I | GTAC | 3 cut(s) | 525, 926, 1930 |
| CviQI | GTAC | 3 cut(s) | 525, 926, 1930 |
| DdeI | CTNAG | 8 cut(s) | 319, 497, 1179, 1305, 1537, 1548, 1713, 1882 |
| DpnI | GATC | 6 cut(s) | 606, 633, 943, 951, 1500, 1507 |
| DpnII | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| EaeI | YGGCCR | 2 cut(s) | 75, 1050 |
| Eam1104I | CTCTTC | 3 cut(s) | 446, 836, 1152 |
| EarI | CTCTTC | 3 cut(s) | 446, 836, 1152 |
| EciI | GGCGGA | 1 cut(s) | 888 |
| Eco130I | CCWWGG | 3 cut(s) | 642, 1859, 1933 |
| Eco31I | GGTCTC | 1 cut(s) | 1586 |
| Eco47I | GGWCC | 2 cut(s) | 430, 1951 |
| Eco47III | AGCGCT | 1 cut(s) | 1925 |
| Eco57I | CTGAAG | 4 cut(s) | 41, 160, 470, 1098 |
| Eco88I | CYCGRG | 1 cut(s) | 1945 |
| Eco91I | GGTNACC | 1 cut(s) | 1357 |
| EcoO109I | RGGNCCY | 1 cut(s) | 430 |
| EcoO65I | GGTNACC | 1 cut(s) | 1357 |
| EcoRII | CCWGG | 3 cut(s) | 705, 762, 1804 |
| EcoT14I | CCWWGG | 3 cut(s) | 642, 1859, 1933 |
| EcoT22I | ATGCAT | 1 cut(s) | 1246 |
| ErhI | CCWWGG | 3 cut(s) | 642, 1859, 1933 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 533, 565 |
| FaqI | GGGAC | 6 cut(s) | 949, 1426, 1439, 1715, 1964, 2024 |
| FauI | CCCGC | 1 cut(s) | 1555 |
| FauNDI | CATATG | 3 cut(s) | 223, 1246, 2044 |
| FblI | GTMKAC | 1 cut(s) | 981 |
| Fnu4HI | GCNGC | 7 cut(s) | 216, 1066, 1163, 1485, 1752, 2025, 2028 |
| FokI | GGATG | 5 cut(s) | 404, 779, 1253, 1263, 1851 |
| Fsp4HI | GCNGC | 7 cut(s) | 216, 1066, 1163, 1485, 1752, 2025, 2028 |
| FspBI | CTAG | 3 cut(s) | 1395, 1860, 2136 |
| GlaI | GCGC | 3 cut(s) | 374, 1925, 2141 |
| GluI | GCNGC | 7 cut(s) | 216, 1066, 1163, 1485, 1752, 2025, 2028 |
| GsaI | CCCAGC | 1 cut(s) | 957 |
| HaeII | RGCGCY | 2 cut(s) | 1927, 2143 |
| HaeIII | GGCC | 3 cut(s) | 77, 710, 1052 |
| HapII | CCGG | 4 cut(s) | 114, 1295, 1735, 2131 |
| HgaI | GACGC | 1 cut(s) | 373 |
| HhaI | GCGC | 3 cut(s) | 375, 1926, 2142 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin6I | GCGC | 3 cut(s) | 373, 1924, 2140 |
| HinP1I | GCGC | 3 cut(s) | 373, 1924, 2140 |
| HincII | GTYRAC | 1 cut(s) | 1047 |
| HindII | GTYRAC | 1 cut(s) | 1047 |
| HindIII | AAGCTT | 2 cut(s) | 458, 680 |
| HinfI | GANTC | 8 cut(s) | 128, 409, 515, 594, 1322, 1620, 1880, 1984 |
| HpaI | GTTAAC | 1 cut(s) | 1047 |
| HpaII | CCGG | 4 cut(s) | 114, 1295, 1735, 2131 |
| HphI | GGTGA | 2 cut(s) | 1794, 1979 |
| Hpy166II | GTNNAC | 4 cut(s) | 271, 982, 1047, 1230 |
| Hpy188III | TCNNGA | 6 cut(s) | 328, 413, 1419, 1787, 1884, 2006 |
| Hpy8I | GTNNAC | 4 cut(s) | 271, 982, 1047, 1230 |
| Hpy99I | CGWCG | 1 cut(s) | 1370 |
| HpyAV | CCTTC | 8 cut(s) | 333, 410, 463, 469, 683, 758, 1348, 1571 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 503, 821, 1543 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 381, 560, 668 |
| HpyF3I | CTNAG | 8 cut(s) | 319, 497, 1179, 1305, 1537, 1548, 1713, 1882 |
| HpySE526I | ACGT | 4 cut(s) | 9, 503, 821, 1543 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| HspAI | GCGC | 3 cut(s) | 373, 1924, 2140 |
| KpnI | GGTACC | 1 cut(s) | 1933 |
| KspAI | GTTAAC | 1 cut(s) | 1047 |
| Kzo9I | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| LguI | GCTCTTC | 2 cut(s) | 446, 1152 |
| LmnI | GCTCC | 4 cut(s) | 825, 1380, 1434, 1789 |
| Lsp1109I | GCAGC | 5 cut(s) | 202, 1174, 1471, 1738, 2014 |
| LweI | GCATC | 6 cut(s) | 333, 1188, 1231, 1241, 1763, 1873 |
| MaeI | CTAG | 3 cut(s) | 1395, 1860, 2136 |
| MaeII | ACGT | 4 cut(s) | 9, 503, 821, 1543 |
| MaeIII | GTNAC | 6 cut(s) | 142, 586, 898, 1262, 1357, 1800 |
| MalI | GATC | 6 cut(s) | 606, 633, 943, 951, 1500, 1507 |
| MboI | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| MfeI | CAATTG | 2 cut(s) | 752, 1796 |
| MflI | RGATCY | 1 cut(s) | 631 |
| MlsI | TGGCCA | 1 cut(s) | 77 |
| MluCI | AATT | 7 cut(s) | 30, 228, 301, 752, 1126, 1790, 1796 |
| MluNI | TGGCCA | 1 cut(s) | 77 |
| MlyI | GAGTC | 2 cut(s) | 1316, 1874 |
| Mox20I | TGGCCA | 1 cut(s) | 77 |
| Mph1103I | ATGCAT | 1 cut(s) | 1246 |
| MroXI | GAANNNNTTC | 2 cut(s) | 366, 911 |
| MscI | TGGCCA | 1 cut(s) | 77 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1191, 1223, 1249 |
| Msp20I | TGGCCA | 1 cut(s) | 77 |
| MspA1I | CMGCKG | 1 cut(s) | 2027 |
| MspCI | CTTAAG | 1 cut(s) | 626 |
| MspI | CCGG | 4 cut(s) | 114, 1295, 1735, 2131 |
| MspR9I | CCNGG | 6 cut(s) | 707, 764, 1295, 1736, 1806, 2132 |
| MunI | CAATTG | 2 cut(s) | 752, 1796 |
| Mva1269I | GAATGC | 2 cut(s) | 671, 1809 |
| MvaI | CCWGG | 3 cut(s) | 707, 764, 1806 |
| MvnI | CGCG | 1 cut(s) | 715 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 381, 560, 668 |
| NciI | CCSGG | 3 cut(s) | 1295, 1736, 2132 |
| NdeI | CATATG | 3 cut(s) | 223, 1246, 2044 |
| NdeII | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| NlaIV | GGNNCC | 6 cut(s) | 344, 432, 633, 1931, 1952, 2070 |
| NmuCI | GTSAC | 2 cut(s) | 1262, 1800 |
| NsiI | ATGCAT | 1 cut(s) | 1246 |
| NspI | RCATGY | 1 cut(s) | 1909 |
| PaeI | GCATGC | 1 cut(s) | 1909 |
| PaqCI | CACCTGC | 1 cut(s) | 1561 |
| PciSI | GCTCTTC | 2 cut(s) | 446, 1152 |
| PctI | GAATGC | 2 cut(s) | 671, 1809 |
| PdmI | GAANNNNTTC | 2 cut(s) | 366, 911 |
| PfeI | GAWTC | 6 cut(s) | 128, 409, 515, 594, 1620, 1984 |
| PflFI | GACNNNGTC | 1 cut(s) | 109 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 292, 803 |
| PkrI | GCNGC | 7 cut(s) | 217, 1067, 1164, 1486, 1753, 2026, 2029 |
| PleI | GAGTC | 2 cut(s) | 1316, 1874 |
| PpsI | GAGTC | 2 cut(s) | 1316, 1874 |
| PpuMI | RGGWCCY | 1 cut(s) | 430 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1371 |
| Psp5II | RGGWCCY | 1 cut(s) | 430 |
| Psp6I | CCWGG | 3 cut(s) | 705, 762, 1804 |
| PspEI | GGTNACC | 1 cut(s) | 1357 |
| PspFI | CCCAGC | 1 cut(s) | 953 |
| PspGI | CCWGG | 3 cut(s) | 705, 762, 1804 |
| PspN4I | GGNNCC | 6 cut(s) | 344, 432, 633, 1931, 1952, 2070 |
| PspPI | GGNCC | 2 cut(s) | 430, 1951 |
| PspPPI | RGGWCCY | 1 cut(s) | 430 |
| PstI | CTGCAG | 2 cut(s) | 2032, 2110 |
| PstNI | CAGNNNCTG | 2 cut(s) | 938, 1304 |
| PsuI | RGATCY | 1 cut(s) | 631 |
| PsyI | GACNNNGTC | 1 cut(s) | 109 |
| RsaI | GTAC | 3 cut(s) | 526, 927, 1931 |
| RsaNI | GTAC | 3 cut(s) | 525, 926, 1930 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1191, 1223, 1249 |
| SapI | GCTCTTC | 2 cut(s) | 446, 1152 |
| SatI | GCNGC | 7 cut(s) | 216, 1066, 1163, 1485, 1752, 2025, 2028 |
| Sau3AI | GATC | 6 cut(s) | 604, 631, 941, 949, 1498, 1505 |
| Sau96I | GGNCC | 2 cut(s) | 430, 1951 |
| ScaI | AGTACT | 1 cut(s) | 526 |
| SchI | GAGTC | 2 cut(s) | 1316, 1874 |
| ScrFI | CCNGG | 6 cut(s) | 707, 764, 1295, 1736, 1806, 2132 |
| SfaNI | GCATC | 6 cut(s) | 333, 1188, 1231, 1241, 1763, 1873 |
| SfcI | CTRYAG | 3 cut(s) | 975, 2028, 2106 |
| SinI | GGWCC | 2 cut(s) | 430, 1951 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1191, 1223, 1249 |
| SmlI | CTYRAG | 3 cut(s) | 137, 626, 1973 |
| SmoI | CTYRAG | 3 cut(s) | 137, 626, 1973 |
| SphI | GCATGC | 1 cut(s) | 1909 |
| Sse9I | AATT | 7 cut(s) | 30, 228, 301, 752, 1126, 1790, 1796 |
| SsiI | CCGC | 6 cut(s) | 715, 873, 1065, 1362, 1562, 2025 |
| SspI | AATATT | 2 cut(s) | 1890, 2078 |
| SspMI | CTAG | 3 cut(s) | 1395, 1860, 2136 |
| StyD4I | CCNGG | 6 cut(s) | 705, 762, 1293, 1734, 1804, 2130 |
| StyI | CCWWGG | 3 cut(s) | 642, 1859, 1933 |
| TaiI | ACGT | 4 cut(s) | 12, 506, 824, 1546 |
| TaqI | TCGA | 3 cut(s) | 163, 597, 1420 |
| TasI | AATT | 7 cut(s) | 30, 228, 301, 752, 1126, 1790, 1796 |
| TatI | WGTACW | 2 cut(s) | 524, 925 |
| TauI | GCSGC | 2 cut(s) | 1068, 2027 |
| TfiI | GAWTC | 6 cut(s) | 128, 409, 515, 594, 1620, 1984 |
| TscAI | CASTG | 6 cut(s) | 285, 819, 1237, 1267, 1305, 1986 |
| TseFI | GTSAC | 2 cut(s) | 1262, 1800 |
| TseI | GCWGC | 5 cut(s) | 215, 1162, 1484, 1751, 2027 |
| Tsp45I | GTSAC | 2 cut(s) | 1262, 1800 |
| TspGWI | ACGGA | 2 cut(s) | 351, 1864 |
| TspRI | CASTG | 6 cut(s) | 285, 819, 1237, 1267, 1305, 1986 |
| Tth111I | GACNNNGTC | 1 cut(s) | 109 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 292, 803 |
| Vha464I | CTTAAG | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 2 cut(s) | 430, 1951 |
| XapI | RAATTY | 1 cut(s) | 301 |
| XceI | RCATGY | 1 cut(s) | 1909 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 819 |
| XmaJI | CCTAGG | 1 cut(s) | 1859 |
| XmiI | GTMKAC | 1 cut(s) | 981 |
| XmnI | GAANNNNTTC | 2 cut(s) | 366, 911 |
| XspI | CTAG | 3 cut(s) | 1395, 1860, 2136 |
| ZrmI | AGTACT | 1 cut(s) | 526 |
| Zsp2I | ATGCAT | 1 cut(s) | 1246 |