40S ribosomal protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 217 |
| AccB1I | GGYRCC | 2 cut(s) | 134, 217 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 227 |
| AccI | GTMKAC | 1 cut(s) | 444 |
| AccII | CGCG | 1 cut(s) | 132 |
| AciI | CCGC | 1 cut(s) | 132 |
| AclWI | GGATC | 1 cut(s) | 52 |
| AcuI | CTGAAG | 1 cut(s) | 258 |
| AcyI | GRCGYC | 1 cut(s) | 47 |
| AdeI | CACNNNGTG | 1 cut(s) | 208 |
| AfaI | GTAC | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 227 |
| AflIII | ACRYGT | 1 cut(s) | 510 |
| AjnI | CCWGG | 2 cut(s) | 31, 193 |
| AleI | CACNNNNGTG | 1 cut(s) | 257 |
| AluBI | AGCT | 1 cut(s) | 278 |
| AluI | AGCT | 1 cut(s) | 278 |
| Alw26I | GTCTC | 4 cut(s) | 38, 41, 286, 501 |
| AlwI | GGATC | 1 cut(s) | 52 |
| Ama87I | CYCGRG | 2 cut(s) | 38, 104 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 311, 343 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 126 |
| Asp718I | GGTACC | 1 cut(s) | 217 |
| AsuHPI | GGTGA | 2 cut(s) | 169, 194 |
| AsuII | TTCGAA | 1 cut(s) | 429 |
| AvaI | CYCGRG | 2 cut(s) | 38, 104 |
| BaeGI | GKGCMC | 1 cut(s) | 254 |
| BanI | GGYRCC | 2 cut(s) | 134, 217 |
| BbsI | GAAGAC | 1 cut(s) | 414 |
| BbvI | GCAGC | 1 cut(s) | 23 |
| BccI | CCATC | 1 cut(s) | 344 |
| BciT130I | CCWGG | 2 cut(s) | 33, 195 |
| BciVI | GTATCC | 1 cut(s) | 158 |
| BcoDI | GTCTC | 4 cut(s) | 38, 41, 286, 501 |
| BfaI | CTAG | 3 cut(s) | 516, 524, 535 |
| BfuI | GTATCC | 1 cut(s) | 158 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 2 cut(s) | 33, 195 |
| BmeT110I | CYCGRG | 2 cut(s) | 38, 104 |
| BmiI | GGNNCC | 2 cut(s) | 136, 219 |
| BmrFI | CCNGG | 2 cut(s) | 33, 195 |
| BmrI | ACTGGG | 1 cut(s) | 504 |
| BmsI | GCATC | 1 cut(s) | 327 |
| BmuI | ACTGGG | 1 cut(s) | 504 |
| BpiI | GAAGAC | 1 cut(s) | 414 |
| Bpu10I | CCTNAGC | 1 cut(s) | 152 |
| Bpu14I | TTCGAA | 1 cut(s) | 429 |
| BsaBI | GATNNNNATC | 2 cut(s) | 71, 369 |
| BsaHI | GRCGYC | 1 cut(s) | 47 |
| BsaI | GGTCTC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 173 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 283, 313 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 227 |
| Bse1I | ACTGG | 1 cut(s) | 499 |
| Bse3DI | GCAATG | 2 cut(s) | 320, 347 |
| Bse8I | GATNNNNATC | 2 cut(s) | 71, 369 |
| BseBI | CCWGG | 2 cut(s) | 33, 195 |
| BseDI | CCNNGG | 2 cut(s) | 138, 173 |
| BseGI | GGATG | 2 cut(s) | 352, 475 |
| BseJI | GATNNNNATC | 2 cut(s) | 71, 369 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BseMI | GCAATG | 2 cut(s) | 320, 347 |
| BseMII | CTCAG | 1 cut(s) | 166 |
| BseNI | ACTGG | 1 cut(s) | 499 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseSI | GKGCMC | 1 cut(s) | 254 |
| BseXI | GCAGC | 1 cut(s) | 23 |
| BsgI | GTGCAG | 1 cut(s) | 166 |
| Bsh1236I | CGCG | 1 cut(s) | 132 |
| BshNI | GGYRCC | 2 cut(s) | 134, 217 |
| BsiHKCI | CYCGRG | 2 cut(s) | 38, 104 |
| BsiSI | CCGG | 1 cut(s) | 50 |
| BslFI | GGGAC | 2 cut(s) | 244, 332 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BsmAI | GTCTC | 4 cut(s) | 38, 41, 286, 501 |
| BsmBI | CGTCTC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 2 cut(s) | 244, 332 |
| Bso31I | GGTCTC | 1 cut(s) | 41 |
| BsoBI | CYCGRG | 2 cut(s) | 38, 104 |
| Bsp119I | TTCGAA | 1 cut(s) | 429 |
| Bsp1286I | GDGCHC | 1 cut(s) | 254 |
| Bsp143I | GATC | 3 cut(s) | 57, 66, 267 |
| BspACI | CCGC | 1 cut(s) | 132 |
| BspCNI | CTCAG | 1 cut(s) | 165 |
| BspFNI | CGCG | 1 cut(s) | 132 |
| BspLI | GGNNCC | 2 cut(s) | 136, 219 |
| BspPI | GGATC | 1 cut(s) | 52 |
| BspT104I | TTCGAA | 1 cut(s) | 429 |
| BspT107I | GGYRCC | 2 cut(s) | 134, 217 |
| BspTNI | GGTCTC | 1 cut(s) | 41 |
| BsrDI | GCAATG | 2 cut(s) | 320, 347 |
| BsrI | ACTGG | 1 cut(s) | 499 |
| BssECI | CCNNGG | 2 cut(s) | 138, 173 |
| BssMI | GATC | 3 cut(s) | 57, 66, 267 |
| BssNI | GRCGYC | 1 cut(s) | 47 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 173 |
| Bst2UI | CCWGG | 2 cut(s) | 33, 195 |
| Bst4CI | ACNGT | 2 cut(s) | 323, 413 |
| Bst6I | CTCTTC | 2 cut(s) | 88, 277 |
| BstACI | GRCGYC | 1 cut(s) | 47 |
| BstBI | TTCGAA | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 1 cut(s) | 311 |
| BstDEI | CTNAG | 2 cut(s) | 152, 455 |
| BstF5I | GGATG | 2 cut(s) | 352, 475 |
| BstFNI | CGCG | 1 cut(s) | 132 |
| BstKTI | GATC | 3 cut(s) | 60, 69, 270 |
| BstMAI | GTCTC | 4 cut(s) | 38, 41, 286, 501 |
| BstMBI | GATC | 3 cut(s) | 57, 66, 267 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 2 cut(s) | 33, 195 |
| BstNSI | RCATGY | 2 cut(s) | 313, 514 |
| BstSCI | CCNGG | 2 cut(s) | 31, 193 |
| BstSLI | GKGCMC | 1 cut(s) | 254 |
| BstUI | CGCG | 1 cut(s) | 132 |
| BstV1I | GCAGC | 1 cut(s) | 23 |
| BstV2I | GAAGAC | 1 cut(s) | 414 |
| BstX2I | RGATCY | 1 cut(s) | 57 |
| BstYI | RGATCY | 1 cut(s) | 57 |
| BsuI | GTATCC | 1 cut(s) | 158 |
| BtgZI | GCGATG | 1 cut(s) | 29 |
| BtsCI | GGATG | 2 cut(s) | 352, 475 |
| BtsIMutI | CAGTG | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 1 cut(s) | 311 |
| CseI | GACGC | 1 cut(s) | 55 |
| Csp6I | GTAC | 1 cut(s) | 218 |
| CviAII | CATG | 4 cut(s) | 227, 310, 361, 511 |
| CviJI | RGCY | 5 cut(s) | 5, 31, 151, 278, 417 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 31, 151, 278, 417 |
| CviQI | GTAC | 1 cut(s) | 218 |
| DdeI | CTNAG | 2 cut(s) | 152, 455 |
| DpnI | GATC | 3 cut(s) | 59, 68, 269 |
| DpnII | GATC | 3 cut(s) | 57, 66, 267 |
| DraIII | CACNNNGTG | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 2 cut(s) | 88, 277 |
| EarI | CTCTTC | 2 cut(s) | 88, 277 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 173 |
| Eco31I | GGTCTC | 1 cut(s) | 41 |
| Eco57I | CTGAAG | 1 cut(s) | 258 |
| Eco88I | CYCGRG | 2 cut(s) | 38, 104 |
| EcoRII | CCWGG | 2 cut(s) | 31, 193 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 173 |
| EcoT22I | ATGCAT | 1 cut(s) | 311 |
| ErhI | CCWWGG | 2 cut(s) | 138, 173 |
| Esp3I | CGTCTC | 1 cut(s) | 38 |
| FaeI | CATG | 4 cut(s) | 230, 313, 364, 514 |
| FaqI | GGGAC | 2 cut(s) | 244, 332 |
| FatI | CATG | 4 cut(s) | 226, 309, 360, 510 |
| FauNDI | CATATG | 1 cut(s) | 477 |
| FblI | GTMKAC | 1 cut(s) | 444 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 359, 482 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 3 cut(s) | 516, 524, 535 |
| GluI | GCNGC | 1 cut(s) | 12 |
| HapII | CCGG | 1 cut(s) | 50 |
| HgaI | GACGC | 1 cut(s) | 55 |
| Hin1I | GRCGYC | 1 cut(s) | 47 |
| Hin1II | CATG | 4 cut(s) | 230, 313, 364, 514 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HinfI | GANTC | 1 cut(s) | 381 |
| HpaII | CCGG | 1 cut(s) | 50 |
| HphI | GGTGA | 2 cut(s) | 169, 194 |
| Hpy166II | GTNNAC | 1 cut(s) | 445 |
| Hpy188III | TCNNGA | 6 cut(s) | 38, 61, 97, 106, 283, 524 |
| Hpy8I | GTNNAC | 1 cut(s) | 445 |
| HpyAV | CCTTC | 2 cut(s) | 154, 208 |
| HpyCH4III | ACNGT | 2 cut(s) | 323, 413 |
| HpyCH4IV | ACGT | 1 cut(s) | 93 |
| HpyCH4V | TGCA | 5 cut(s) | 183, 309, 313, 340, 369 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 2 cut(s) | 152, 455 |
| HpySE526I | ACGT | 1 cut(s) | 93 |
| Hsp92I | GRCGYC | 1 cut(s) | 47 |
| Hsp92II | CATG | 4 cut(s) | 230, 313, 364, 514 |
| KpnI | GGTACC | 1 cut(s) | 221 |
| Kzo9I | GATC | 3 cut(s) | 57, 66, 267 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| Lsp1109I | GCAGC | 1 cut(s) | 23 |
| LweI | GCATC | 1 cut(s) | 327 |
| MaeI | CTAG | 3 cut(s) | 516, 524, 535 |
| MaeII | ACGT | 1 cut(s) | 93 |
| MaeIII | GTNAC | 2 cut(s) | 200, 434 |
| MalI | GATC | 3 cut(s) | 59, 68, 269 |
| MboI | GATC | 3 cut(s) | 57, 66, 267 |
| MboII | GAAGA | 6 cut(s) | 75, 76, 264, 419, 473, 494 |
| MflI | RGATCY | 1 cut(s) | 57 |
| MhlI | GDGCHC | 1 cut(s) | 254 |
| MluCI | AATT | 3 cut(s) | 122, 422, 488 |
| MlyI | GAGTC | 1 cut(s) | 375 |
| MnlI | CCTC | 4 cut(s) | 34, 113, 141, 433 |
| Mph1103I | ATGCAT | 1 cut(s) | 311 |
| MroXI | GAANNNNTTC | 1 cut(s) | 126 |
| MslI | CAYNNNNRTG | 1 cut(s) | 257 |
| MspI | CCGG | 1 cut(s) | 50 |
| MspR9I | CCNGG | 2 cut(s) | 33, 195 |
| MvaI | CCWGG | 2 cut(s) | 33, 195 |
| MvnI | CGCG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeI | CATATG | 1 cut(s) | 477 |
| NdeII | GATC | 3 cut(s) | 57, 66, 267 |
| NlaIII | CATG | 4 cut(s) | 230, 313, 364, 514 |
| NlaIV | GGNNCC | 2 cut(s) | 136, 219 |
| NmuCI | GTSAC | 1 cut(s) | 200 |
| NsiI | ATGCAT | 1 cut(s) | 311 |
| NspI | RCATGY | 2 cut(s) | 313, 514 |
| NspV | TTCGAA | 1 cut(s) | 429 |
| OliI | CACNNNNGTG | 1 cut(s) | 257 |
| PaeI | GCATGC | 1 cut(s) | 313 |
| PaeR7I | CTCGAG | 2 cut(s) | 38, 104 |
| PciI | ACATGT | 1 cut(s) | 510 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 126 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 227 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PleI | GAGTC | 1 cut(s) | 375 |
| PpsI | GAGTC | 1 cut(s) | 375 |
| PscI | ACATGT | 1 cut(s) | 510 |
| Psp6I | CCWGG | 2 cut(s) | 31, 193 |
| PspGI | CCWGG | 2 cut(s) | 31, 193 |
| PspN4I | GGNNCC | 2 cut(s) | 136, 219 |
| PsuI | RGATCY | 1 cut(s) | 57 |
| RsaI | GTAC | 1 cut(s) | 219 |
| RsaNI | GTAC | 1 cut(s) | 218 |
| RseI | CAYNNNNRTG | 1 cut(s) | 257 |
| SalI | GTCGAC | 1 cut(s) | 443 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 3 cut(s) | 57, 66, 267 |
| SchI | GAGTC | 1 cut(s) | 375 |
| ScrFI | CCNGG | 2 cut(s) | 33, 195 |
| SduI | GDGCHC | 1 cut(s) | 254 |
| SetI | ASST | 9 cut(s) | 96, 105, 171, 179, 219, 280, 398, 444, 456 |
| SfaNI | GCATC | 1 cut(s) | 327 |
| Sfr274I | CTCGAG | 2 cut(s) | 38, 104 |
| SfuI | TTCGAA | 1 cut(s) | 429 |
| SlaI | CTCGAG | 2 cut(s) | 38, 104 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 257 |
| SmlI | CTYRAG | 2 cut(s) | 38, 104 |
| SmoI | CTYRAG | 2 cut(s) | 38, 104 |
| SphI | GCATGC | 1 cut(s) | 313 |
| Sse9I | AATT | 3 cut(s) | 122, 422, 488 |
| SsiI | CCGC | 1 cut(s) | 132 |
| SspMI | CTAG | 3 cut(s) | 516, 524, 535 |
| StyD4I | CCNGG | 2 cut(s) | 31, 193 |
| StyI | CCWWGG | 2 cut(s) | 138, 173 |
| TaaI | ACNGT | 2 cut(s) | 323, 413 |
| TaiI | ACGT | 1 cut(s) | 96 |
| TaqI | TCGA | 4 cut(s) | 39, 105, 429, 444 |
| TasI | AATT | 3 cut(s) | 122, 422, 488 |
| TscAI | CASTG | 1 cut(s) | 418 |
| TseFI | GTSAC | 1 cut(s) | 200 |
| TseI | GCWGC | 1 cut(s) | 11 |
| Tsp45I | GTSAC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 2 cut(s) | 32, 501 |
| TspRI | CASTG | 1 cut(s) | 418 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 227 |
| XbaI | TCTAGA | 1 cut(s) | 523 |
| XceI | RCATGY | 2 cut(s) | 313, 514 |
| XhoI | CTCGAG | 2 cut(s) | 38, 104 |
| XmiI | GTMKAC | 1 cut(s) | 444 |
| XmnI | GAANNNNTTC | 1 cut(s) | 126 |
| XspI | CTAG | 3 cut(s) | 516, 524, 535 |
| Zsp2I | ATGCAT | 1 cut(s) | 311 |