Rh3DG305100

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000030
Physical Location & Seq
Reverse (-)
32359302 .. 32362464
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG305100.1

Sequence Viewer

Length: 2217 bp
ATGTTTCAGGGAACCGACTCCGCTGTTGTATTATCAAGTGGGTCAGGCATTGATGATTGTATGACATTACCCGGTGGTAAGGAAGAATCAGACAGTCAGGTTACAATCAGGACAGCATGCCGAGGAAAACACTTCACAAAAACTATGTCTTCCCTATCAGCTGGAAAGTTAGTTGCAACAATAGAAATGGGGTTTGGGTCACTTTATGAATTTCGCTGTACGAAAGTGAATCTCCCACTTTGCCAAGTGCTGGTTGAAAATTTTGACGTGGCGAACTCAAGCATCAACATTCATGGAAGGAACCTGACAATCACACATGAAGACTTTGAACGCATAATGGGCGTTAGGAATGGAGGTTGTGATGTGGAGGTTGAAGGAAACACCGAGGACCCTGATATATTGGCCCTGGAGAGGAAGATTTCGGGGAAGGAGAATCAGATAACAATACATGGATTGAGGAGGGTGCTGATTGAGTCTGAAAGCGCTGATGAGATATTTAGGATCAGCTTTGCCTTGTATGCCCTTGCAACCCTGCTATCTCCAGTAACAGGAATCCATGTTGAACGAAGATATCTTATTCCACTTAAGGATCCAAATGGCCTGTGTTCAAAAAACAGGGCAAATTTTTCATTTGATAAGCTCGTTGAAGGGGTGTCATTGTTTCAGGGCATGAGGATTGGATTGGCCGAAGGTTGTATTCTGTTCCTTCAGTTATTCTATCTGGACGTTGTTAGCAATGGCATGTTTGTTTTGCCGAAGACGGTGAAACCTGTTATGATATGGGGCGCGGACGAGGCAAAGAAAATTTATGAGCAGGTGGAGAGCATGGGGGGATGGAAAAGTGAGTCTGTTTATGTGACAAAGAGGTATTTGTGGGACAGAACAATTCAGTACAGTGGATCGGTTGATGCCATCACAGGGATAAAAACCAATGTCGTGGAAGACTTGTCAGAAGTGATGGCTGATGTGGGTGTCGTTAAAGGGGACATTCGGAATCTAAAGGCAATGGTCGCTCAATTGGGACCGGATATGTGCCGTTTGAGGAGCGCAATTATGACGTTAGAAACATCTCTTGAGAAGCTGAAGGCTGAGGGCCTCTGCCAGCTTGTTTCAGACACTATCATGGGAGTGTTTGAGGATAAGCAGAATGATTATGTGGGCAATGATGGGACTGATGTTTTTGTTGATGGTCAAAAGCAGCATGGTCCAGAATTTGAGTTAGATGACGATGGGATGCCTAATGCTAAATCCAAAATTGTCATTTCCAATGAGGTGGTAGCATACCGGGATCGCAGCACTGAGGTTGAGAGAAATGAACAGACGAGGTTCGAAGCGGTGGCCAAGATTTCAGAGAGGGATGCATACTTATTGGCATATCTCTTCAGCAAGAAGGTTTCTGCCGACGACAGTTTTGGGAGCAACGAAGTTGCTAGGTTCGAGGATTCAGGTGTATCTCGCTGGGACCTGAGCTGCTTGTCCCCAACGCAGTCGTTGACTGCCGAGGTTGTCAACATATCGGCTGCGTACTTGTGCCAGAGCGGATCTGAGAACTGGTTCTTGCCAGCTACAGTGTCGGAGTGTGCTAAGGAGATTTCGGCAGGTATGCTAGTGGAAGCTATTGTGCCTTCGACCATTACACTCTGCAAACTGGGAAGATTTATTGGCCGATTATCGTCATGCAATAAGATGTTCCTCCCCATCCATGACGGGGTAGTGAAGCATTGGTTTTTGGCTGTGGTGAACATACCGGACGCCGAGTGTGAAATATGGGACAGCAACCCTGTTGATTCTGCTAATACACGCAGGCAGGAATATGCCATTGCATTGATGTGTTTGCTTGAAAAATTATTTGGCAATGAACTGCGAATGGCACCCGACCTGTACGCACGGTTTGGATCATTCTCCATTAGTTATCCAGAGTCTTGCCCTCTGCATCCTAGATCTGAAGACTCCGGAATATTTGTGATAAGAAACATGCAGTTTTACAGACAGCGGTGGTACCTAGGGTTTAACTCCGGCGACCAGAGGGTTCGTATGGCACTTGAGATTGTCAATCACCCTACGAATGAAATTCGTGAAAGGGTGTGGAGTGCCGCCGCCGAGGAAGTCCCATATGATGTACCTACCACGGGCGTGCCACCATTATCTCTGAAGGAGGATGCAATTCATGTGAATTCGGGCATGAAGTTCAATCCACGCCGGTCCAAGCGCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

738

Amino Acids

82.07

Weight (kDa)

5.19

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 561 - 663 1.6e-10 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 805
Acc36I ACCTGC 2 cut(s) 805, 1589
Acc65I GGTACC 1 cut(s) 1998
AccB1I GGYRCC 2 cut(s) 1870, 1998
AccB7I CCANNNNNTGG 1 cut(s) 250
AccBSI CCGCTC 1 cut(s) 1539
AccII CGCG 2 cut(s) 788, 2211
AccIII TCCGGA 1 cut(s) 1952
AciI CCGC 8 cut(s) 21, 788, 1334, 1539, 1993, 2094, 2097, 2211
AclWI GGATC 7 cut(s) 509, 584, 597, 907, 1296, 1549, 1903
AcoI YGGCCR 3 cut(s) 684, 1338, 1663
AcsI RAATTY 7 cut(s) 209, 259, 622, 804, 1211, 2070, 2173
AcuI CTGAAG 5 cut(s) 692, 1103, 1366, 1965, 2171
AcyI GRCGYC 1 cut(s) 1752
AfaI GTAC 6 cut(s) 220, 893, 1526, 1883, 2000, 2121
AfeI AGCGCT 1 cut(s) 484
AfiI CCNNNNNNNGG 6 cut(s) 250, 411, 548, 918, 1708, 2129
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 8 cut(s) 257, 329, 374, 563, 609, 647, 1841, 2191
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 4 cut(s) 177, 209, 1833, 1865
AleI CACNNNNGTG 1 cut(s) 2132
AluBI AGCT 8 cut(s) 161, 507, 640, 1081, 1105, 1470, 1565, 1616
AluI AGCT 8 cut(s) 161, 507, 640, 1081, 1105, 1470, 1565, 1616
AlwI GGATC 7 cut(s) 509, 584, 597, 907, 1296, 1549, 1903
Aor13HI TCCGGA 1 cut(s) 1952
Aor51HI AGCGCT 1 cut(s) 484
AoxI GGCC 6 cut(s) 402, 598, 684, 1093, 1338, 1663
ApeKI GCWGC 4 cut(s) 1198, 1293, 1470, 1520
ApoI RAATTY 7 cut(s) 209, 259, 622, 804, 1211, 2070, 2173
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 1394, 1426
Asp700I GAANNNNTTC 1 cut(s) 1553
Asp718I GGTACC 1 cut(s) 1998
AspA2I CCTAGG 1 cut(s) 2002
AspLEI GCGC 4 cut(s) 485, 788, 1049, 2211
AspS9I GGNCC 7 cut(s) 388, 403, 1022, 1093, 1205, 1462, 2202
AsuC2I CCSGG 2 cut(s) 72, 1286
AsuHPI GGTGA 3 cut(s) 775, 1750, 2048
AsuII TTCGAA 1 cut(s) 1329
AvaII GGWCC 5 cut(s) 388, 1022, 1205, 1462, 2202
AvrII CCTAGG 1 cut(s) 2002
BalI TGGCCA 1 cut(s) 1340
BamHI GGATCC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 1870, 1998
BbsI GAAGAC 5 cut(s) 141, 327, 764, 948, 1953
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 4 cut(s) 1210, 1305, 1457, 1507
BccI CCATC 7 cut(s) 828, 920, 952, 1160, 1181, 1223, 1706
BceAI ACGGC 1 cut(s) 1020
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 2 cut(s) 72, 1286
BfaI CTAG 4 cut(s) 1431, 1607, 1938, 2003
BfmI CTRYAG 1 cut(s) 1566
BfoI RGCGCY 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 2 cut(s) 805, 1589
BglII AGATCT 1 cut(s) 1940
BisI GCNGC 6 cut(s) 1199, 1294, 1471, 1521, 2094, 2097
BlnI CCTAGG 1 cut(s) 2002
BlsI GCNGC 6 cut(s) 1200, 1295, 1472, 1522, 2095, 2098
Bme1390I CCNGG 3 cut(s) 72, 407, 1286
Bme18I GGWCC 5 cut(s) 388, 1022, 1205, 1462, 2202
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 7 cut(s) 388, 403, 1022, 1093, 1205, 1462, 2202
BmiI GGNNCC 8 cut(s) 13, 302, 390, 591, 1023, 1463, 1872, 2000
BmrFI CCNGG 3 cut(s) 72, 407, 1286
BmrI ACTGGG 1 cut(s) 1658
BmsI GCATC 6 cut(s) 291, 898, 1224, 1348, 1942, 2149
BmuI ACTGGG 1 cut(s) 1658
BpiI GAAGAC 5 cut(s) 141, 327, 764, 948, 1953
BpmI CTGGAG 2 cut(s) 428, 525
Bpu10I CCTNAGC 3 cut(s) 1089, 1466, 1584
Bpu14I TTCGAA 1 cut(s) 1329
BpuEI CTTGAG 3 cut(s) 262, 1094, 2063
BpuMI CCSGG 2 cut(s) 72, 1286
BsaHI GRCGYC 1 cut(s) 1752
BsaJI CCNNGG 7 cut(s) 121, 384, 405, 1500, 2002, 2100, 2127
BsaWI WCCGGW 3 cut(s) 1024, 1747, 1952
Bsc4I CCNNNNNNNGG 6 cut(s) 250, 411, 548, 918, 1708, 2129
Bse118I RCCGGY 1 cut(s) 2199
Bse1I ACTGG 3 cut(s) 542, 1556, 1653
Bse3DI GCAATG 5 cut(s) 742, 1011, 1168, 1818, 1861
BseAI TCCGGA 1 cut(s) 1952
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 7 cut(s) 121, 384, 405, 1500, 2002, 2100, 2127
BseGI GGATG 6 cut(s) 839, 1239, 1363, 1698, 1933, 2164
BseLI CCNNNNNNNGG 6 cut(s) 250, 411, 548, 918, 1708, 2129
BseMI GCAATG 5 cut(s) 742, 1011, 1168, 1818, 1861
BseMII CTCAG 4 cut(s) 1080, 1290, 1457, 1536
BseNI ACTGG 3 cut(s) 542, 1556, 1653
BseRI GAGGAG 2 cut(s) 472, 1057
BseXI GCAGC 4 cut(s) 1210, 1305, 1457, 1507
BseYI CCCAGC 1 cut(s) 1458
Bsh1236I CGCG 2 cut(s) 788, 2211
BshFI GGCC 6 cut(s) 404, 600, 686, 1095, 1340, 1665
BshNI GGYRCC 2 cut(s) 1870, 1998
BsiSI CCGG 7 cut(s) 72, 1025, 1285, 1748, 1953, 2016, 2200
BslFI GGGAC 8 cut(s) 890, 998, 1035, 1183, 1462, 1475, 1784, 2093
BslI CCNNNNNNNGG 6 cut(s) 250, 411, 548, 918, 1708, 2129
BsmFI GGGAC 8 cut(s) 890, 998, 1035, 1183, 1462, 1475, 1784, 2093
BsnI GGCC 6 cut(s) 404, 600, 686, 1095, 1340, 1665
Bsp119I TTCGAA 1 cut(s) 1329
Bsp13I TCCGGA 1 cut(s) 1952
Bsp143I GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
BspACI CCGC 8 cut(s) 21, 788, 1334, 1539, 1993, 2094, 2097, 2211
BspANI GGCC 6 cut(s) 404, 600, 686, 1095, 1340, 1665
BspCNI CTCAG 4 cut(s) 1081, 1291, 1458, 1537
BspEI TCCGGA 1 cut(s) 1952
BspFNI CGCG 2 cut(s) 788, 2211
BspLI GGNNCC 8 cut(s) 13, 302, 390, 591, 1023, 1463, 1872, 2000
BspMI ACCTGC 2 cut(s) 805, 1589
BspPI GGATC 7 cut(s) 509, 584, 597, 907, 1296, 1549, 1903
BspT104I TTCGAA 1 cut(s) 1329
BspT107I GGYRCC 2 cut(s) 1870, 1998
BspTI CTTAAG 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 1539
BsrDI GCAATG 5 cut(s) 742, 1011, 1168, 1818, 1861
BsrFI RCCGGY 1 cut(s) 2199
BsrI ACTGG 3 cut(s) 542, 1556, 1653
BssAI RCCGGY 1 cut(s) 2199
BssECI CCNNGG 7 cut(s) 121, 384, 405, 1500, 2002, 2100, 2127
BssMI GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
BssNI GRCGYC 1 cut(s) 1752
BssT1I CCWWGG 1 cut(s) 2002
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 6 cut(s) 95, 763, 896, 1409, 1570, 1890
Bst6I CTCTTC 1 cut(s) 1385
BstACI GRCGYC 1 cut(s) 1752
BstAFI CTTAAG 1 cut(s) 584
BstBI TTCGAA 1 cut(s) 1329
BstC8I GCNNGC 5 cut(s) 118, 1103, 1563, 1805, 2135
BstDEI CTNAG 5 cut(s) 1089, 1299, 1466, 1545, 1584
BstDSI CCRYGG 1 cut(s) 2127
BstF5I GGATG 6 cut(s) 839, 1239, 1363, 1698, 1933, 2164
BstFNI CGCG 2 cut(s) 788, 2211
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 4 cut(s) 485, 788, 1049, 2211
BstKTI GATC 7 cut(s) 504, 592, 902, 1291, 1544, 1898, 1943
BstMBI GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
BstMWI GCNNNNNNNGC 4 cut(s) 339, 518, 794, 1010
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 3 cut(s) 120, 745, 1978
BstSCI CCNGG 3 cut(s) 70, 405, 1284
BstSFI CTRYAG 1 cut(s) 1566
BstUI CGCG 2 cut(s) 788, 2211
BstV1I GCAGC 4 cut(s) 1210, 1305, 1457, 1507
BstV2I GAAGAC 5 cut(s) 141, 327, 764, 948, 1953
BstX2I RGATCY 3 cut(s) 589, 1541, 1940
BstXI CCANNNNNNTGG 2 cut(s) 937, 1273
BstYI RGATCY 3 cut(s) 589, 1541, 1940
BsuRI GGCC 6 cut(s) 404, 600, 686, 1095, 1340, 1665
BtgI CCRYGG 1 cut(s) 2127
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 6 cut(s) 839, 1239, 1363, 1698, 1933, 2164
BtsIMutI CAGTG 3 cut(s) 901, 1296, 1575
BveI ACCTGC 2 cut(s) 805, 1589
Cac8I GCNNGC 5 cut(s) 118, 1103, 1563, 1805, 2135
CfoI GCGC 4 cut(s) 485, 788, 1049, 2211
Cfr10I RCCGGY 1 cut(s) 2199
Cfr13I GGNCC 7 cut(s) 388, 403, 1022, 1093, 1205, 1462, 2202
CseI GACGC 1 cut(s) 1760
Csp6I GTAC 6 cut(s) 219, 892, 1525, 1882, 1999, 2120
CviQI GTAC 6 cut(s) 219, 892, 1525, 1882, 1999, 2120
DdeI CTNAG 5 cut(s) 1089, 1299, 1466, 1545, 1584
DpnI GATC 7 cut(s) 503, 591, 901, 1290, 1543, 1897, 1942
DpnII GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
EaeI YGGCCR 3 cut(s) 684, 1338, 1663
Eam1104I CTCTTC 1 cut(s) 1385
EarI CTCTTC 1 cut(s) 1385
Eco130I CCWWGG 1 cut(s) 2002
Eco32I GATATC 1 cut(s) 572
Eco47I GGWCC 5 cut(s) 388, 1022, 1205, 1462, 2202
Eco47III AGCGCT 1 cut(s) 484
Eco57I CTGAAG 5 cut(s) 692, 1103, 1366, 1965, 2171
EcoO109I RGGNCCY 3 cut(s) 388, 1093, 1462
EcoRI GAATTC 1 cut(s) 2173
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 2002
EcoT22I ATGCAT 1 cut(s) 1363
ErhI CCWWGG 1 cut(s) 2002
FaqI GGGAC 8 cut(s) 890, 998, 1035, 1183, 1462, 1475, 1784, 2093
FauNDI CATATG 1 cut(s) 2113
Fnu4HI GCNGC 6 cut(s) 1199, 1294, 1471, 1521, 2094, 2097
FokI GGATG 6 cut(s) 846, 1246, 1370, 1685, 1920, 2171
Fsp4HI GCNGC 6 cut(s) 1199, 1294, 1471, 1521, 2094, 2097
FspBI CTAG 4 cut(s) 1431, 1607, 1938, 2003
GlaI GCGC 4 cut(s) 484, 787, 1048, 2210
GluI GCNGC 6 cut(s) 1199, 1294, 1471, 1521, 2094, 2097
GsaI CCCAGC 1 cut(s) 1462
GsuI CTGGAG 2 cut(s) 428, 525
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 6 cut(s) 404, 600, 686, 1095, 1340, 1665
HapII CCGG 7 cut(s) 72, 1025, 1285, 1748, 1953, 2016, 2200
HgaI GACGC 1 cut(s) 1760
HhaI GCGC 4 cut(s) 485, 788, 1049, 2211
Hin1I GRCGYC 1 cut(s) 1752
Hin6I GCGC 4 cut(s) 483, 786, 1047, 2209
HinP1I GCGC 4 cut(s) 483, 786, 1047, 2209
HincII GTYRAC 2 cut(s) 1494, 1510
HindII GTYRAC 2 cut(s) 1494, 1510
HpaII CCGG 7 cut(s) 72, 1025, 1285, 1748, 1953, 2016, 2200
HphI GGTGA 3 cut(s) 775, 1750, 2048
Hpy166II GTNNAC 3 cut(s) 1494, 1510, 1741
Hpy188III TCNNGA 7 cut(s) 109, 722, 1073, 1208, 1916, 1953, 2075
Hpy8I GTNNAC 3 cut(s) 1494, 1510, 1741
Hpy99I CGWCG 1 cut(s) 1406
HpyCH4III ACNGT 6 cut(s) 95, 763, 896, 1409, 1570, 1890
HpyCH4IV ACGT 3 cut(s) 267, 726, 1058
HpyCH4V TGCA 9 cut(s) 176, 527, 1361, 1644, 1680, 1823, 1933, 1978, 2162
HpyF10VI GCNNNNNNNGC 4 cut(s) 339, 518, 794, 1010
HpyF3I CTNAG 5 cut(s) 1089, 1299, 1466, 1545, 1584
HpySE526I ACGT 3 cut(s) 267, 726, 1058
Hsp92I GRCGYC 1 cut(s) 1752
HspAI GCGC 4 cut(s) 483, 786, 1047, 2209
Kpn2I TCCGGA 1 cut(s) 1952
KpnI GGTACC 1 cut(s) 2002
Kzo9I GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
LmnI GCTCC 2 cut(s) 1044, 1416
Lsp1109I GCAGC 4 cut(s) 1210, 1305, 1457, 1507
LweI GCATC 6 cut(s) 291, 898, 1224, 1348, 1942, 2149
MaeI CTAG 4 cut(s) 1431, 1607, 1938, 2003
MaeII ACGT 3 cut(s) 267, 726, 1058
MaeIII GTNAC 4 cut(s) 100, 198, 544, 856
MalI GATC 7 cut(s) 503, 591, 901, 1290, 1543, 1897, 1942
MbiI CCGCTC 1 cut(s) 1539
MboI GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
MfeI CAATTG 1 cut(s) 1016
MflI RGATCY 3 cut(s) 589, 1541, 1940
MlsI TGGCCA 1 cut(s) 1340
MluNI TGGCCA 1 cut(s) 1340
MlyI GAGTC 5 cut(s) 11, 482, 854, 1928, 1943
MmeI TCCRAC 1 cut(s) 1554
Mox20I TGGCCA 1 cut(s) 1340
Mph1103I ATGCAT 1 cut(s) 1363
MroI TCCGGA 1 cut(s) 1952
MroXI GAANNNNTTC 1 cut(s) 1553
MscI TGGCCA 1 cut(s) 1340
MseI TTAA 3 cut(s) 585, 978, 2010
MslI CAYNNNNRTG 4 cut(s) 1121, 1127, 1828, 2132
Msp20I TGGCCA 1 cut(s) 1340
MspA1I CMGCKG 3 cut(s) 23, 161, 1993
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 7 cut(s) 72, 1025, 1285, 1748, 1953, 2016, 2200
MspR9I CCNGG 3 cut(s) 72, 407, 1286
MunI CAATTG 1 cut(s) 1016
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 2 cut(s) 788, 2211
MwoI GCNNNNNNNGC 4 cut(s) 339, 518, 794, 1010
NciI CCSGG 2 cut(s) 72, 1286
NdeI CATATG 1 cut(s) 2113
NdeII GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
NlaIV GGNNCC 8 cut(s) 13, 302, 390, 591, 1023, 1463, 1872, 2000
NmeAIII GCCGAG 4 cut(s) 146, 1525, 1780, 2125
NmuCI GTSAC 2 cut(s) 198, 856
NsiI ATGCAT 1 cut(s) 1363
NspI RCATGY 3 cut(s) 120, 745, 1978
NspV TTCGAA 1 cut(s) 1329
OliI CACNNNNGTG 1 cut(s) 2132
PaeI GCATGC 1 cut(s) 120
PaqCI CACCTGC 1 cut(s) 805
PdmI GAANNNNTTC 1 cut(s) 1553
PfeI GAWTC 7 cut(s) 86, 229, 433, 552, 994, 1442, 1787
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 6 cut(s) 1200, 1295, 1472, 1522, 2095, 2098
PleI GAGTC 5 cut(s) 11, 481, 853, 1927, 1943
PpsI GAGTC 5 cut(s) 11, 481, 853, 1927, 1943
PpuMI RGGWCCY 2 cut(s) 388, 1462
Psp5II RGGWCCY 2 cut(s) 388, 1462
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 1458
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 8 cut(s) 13, 302, 390, 591, 1023, 1463, 1872, 2000
PspPI GGNCC 7 cut(s) 388, 403, 1022, 1093, 1205, 1462, 2202
PspPPI RGGWCCY 2 cut(s) 388, 1462
PsuI RGATCY 3 cut(s) 589, 1541, 1940
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 6 cut(s) 220, 893, 1526, 1883, 2000, 2121
RsaNI GTAC 6 cut(s) 219, 892, 1525, 1882, 1999, 2120
RseI CAYNNNNRTG 4 cut(s) 1121, 1127, 1828, 2132
SaqAI TTAA 3 cut(s) 585, 978, 2010
SatI GCNGC 6 cut(s) 1199, 1294, 1471, 1521, 2094, 2097
Sau3AI GATC 7 cut(s) 501, 589, 899, 1288, 1541, 1895, 1940
Sau96I GGNCC 7 cut(s) 388, 403, 1022, 1093, 1205, 1462, 2202
SchI GAGTC 5 cut(s) 11, 482, 854, 1928, 1943
ScrFI CCNGG 3 cut(s) 72, 407, 1286
SfaNI GCATC 6 cut(s) 291, 898, 1224, 1348, 1942, 2149
SfcI CTRYAG 1 cut(s) 1566
SfuI TTCGAA 1 cut(s) 1329
SinI GGWCC 5 cut(s) 388, 1022, 1205, 1462, 2202
SmiMI CAYNNNNRTG 4 cut(s) 1121, 1127, 1828, 2132
SmlI CTYRAG 4 cut(s) 277, 584, 1073, 2042
SmoI CTYRAG 4 cut(s) 277, 584, 1073, 2042
SphI GCATGC 1 cut(s) 120
SsiI CCGC 8 cut(s) 21, 788, 1334, 1539, 1993, 2094, 2097, 2211
SspI AATATT 1 cut(s) 1959
SspMI CTAG 4 cut(s) 1431, 1607, 1938, 2003
StyD4I CCNGG 3 cut(s) 70, 405, 1284
StyI CCWWGG 1 cut(s) 2002
TaaI ACNGT 6 cut(s) 95, 763, 896, 1409, 1570, 1890
TaiI ACGT 3 cut(s) 270, 729, 1061
TaqI TCGA 3 cut(s) 1329, 1437, 1628
TatI WGTACW 1 cut(s) 891
TauI GCSGC 2 cut(s) 2096, 2099
TfiI GAWTC 7 cut(s) 86, 229, 433, 552, 994, 1442, 1787
Tru1I TTAA 3 cut(s) 585, 978, 2010
Tru9I TTAA 3 cut(s) 585, 978, 2010
TscAI CASTG 3 cut(s) 901, 1303, 1575
TseFI GTSAC 2 cut(s) 198, 856
TseI GCWGC 4 cut(s) 1198, 1293, 1470, 1520
Tsp45I GTSAC 2 cut(s) 198, 856
TspDTI ATGAA 9 cut(s) 222, 281, 333, 618, 1329, 1872, 2082, 2156, 2198
TspRI CASTG 3 cut(s) 901, 1303, 1575
Van91I CCANNNNNTGG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 5 cut(s) 388, 1022, 1205, 1462, 2202
XapI RAATTY 7 cut(s) 209, 259, 622, 804, 1211, 2070, 2173
XceI RCATGY 3 cut(s) 120, 745, 1978
XmaJI CCTAGG 1 cut(s) 2002
XmnI GAANNNNTTC 1 cut(s) 1553
XspI CTAG 4 cut(s) 1431, 1607, 1938, 2003
Zsp2I ATGCAT 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.