Rh5AG365100

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000030
Physical Location & Seq
Reverse (-)
61628449 .. 61631296
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG365100.1

Sequence Viewer

Length: 1770 bp
ATGGGCGTTAGGAATGGAGGTTGTGATGTGGAGGTTGAAGGAAACACCGAGGACCCTGATATATTGGCCCTGGAGAGGAAGATTTCGGGGAAGGAGAATCAGATAACAATACATGGATTGAGGAGGGTGCTGATTGAGTCTGAAAGCGCTGATGAGATATTTAGGATCAGCTTTGCCTTGTATGCCCTTGCAACCCTGCTATCTCCAGTAACAGGAATCCATGTTGAACGAAGATATCTTATTCCACTTAAGGATCCAAATGGCCTGTGTTCAAAAAACTGGGCAAAGTTTGCATTTGATAAGCTCGTTGAAGGGGTGTCATTGTTTCAGGGCACGGGGATTGGATTGGCCGGAGGTTGTATTCTGTTCCTTCAGTTGTTCTATCTGGACGTTGTTAGCAATGGCATGTTTGTTTTGCCGAAGACGGTGAAACCTGTTATGATATGGGGCGCGGACGAGGCAAAGAAAATTTATGAGCAGGTGGAGAGCATGGGGGGATGGAAAAGTGAGTCTGTTTATGTGACAAAGAGGTATTTGTGGGACAGAACAATTCAGTTCAGTGGATCGGTTGATGCCAGCACAGGGATAAAAACCAATGTCGTGGAAGACTTGTCAGAAGTGATGGCTGATGTGGGTGTCGTTAAAGGGGACATCCGGAATCTAAAGGCAATGGTTGGTCAATTGGGACCGGATATGTGCCGTTTGAGGAGCGCAATTCTGACGTTAGAAACATCTCTTGAGAAGCTGAAGGCTGAGGGCCTCTGTCAGCTTGTTTCAGACACTATCATGGGAGTGTTTGAGGATAAGCAGAATGATTATGTGGGCAATGATGGGACTGATGTTTTTGTTGATGGTCAAAAGCAGCATGGTCCAGAATTTGAGTCAGATGATGATGGGATGCCTAATGCTAAATCCAAAATTGTCATTTCCAATGAGGTGGTAGCATACCGGGATCGCAGCACTGAGGTTGAGAGAAGTGAACAGACGAGGTTCGAAGCGGTGGCCGAGATTTCAGAGAGGGATGCATACTTATTGGCATATCTCTTCAGCAAGAAGGTTTCTGCAGACGACAGTTTTGGGAGCAACGAAGTTGCTAGGTTCGAGGATTCAGGTGTATCTCGCTGGGACCTGAGCTGCTTGTCCCCAACGCAGTCGTTGACTGCCGAGGTTGTCAACATATCGGCTGCGTACTTGTGCCAGAGGGGATCTGAGAACTGGTTCTTGCCAGCTACAGTGTCGATGTTCCTCCCCATCCATGACGGGGTTGTGAAGCATTGGTTTTTGGCTGTGGTGAACATACCGGACGCCGTGTGTGAAATATGGGACAGCAACCCTGTTGATTCTGCTAATACACGCAGGCAGGAATATGCCATTGCATCGATGTGTTTGCTTGAAAAAGTATTTGGCAATGAACTGCGAATGGCACCCGACCTGTACGCACGGTTTGGATCATTCTCCATTAGTTATCCAGAGTCTTGCCCTCTGCATCCCAGATCTGAAGACTCCGGAATATTTGTGATAAGAAACATGCAGTTTTACAGACAGCGGTGGTACGTAGGGTTTAACTCCGGCGACCAGAGGGTTCGTATGGCACTTGAGATTGTCAATCACCCTCACAATGAAATTCGTGAACGGGTGTGGAGTGCCGCCGCCGAGGAAGTCCCATATGATGTACCTACCACGGGCGTGCCACCATTATCTCTGAAGGAGGATGCAGTTCTCCCAACTTCGGGCATGAAGTTCAATCCACGCCGGTCCAGGCGCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

589

Amino Acids

65.7

Weight (kDa)

5.04

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 414 - 515 2.2e-09 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 469
AccB1I GGYRCC 1 cut(s) 1423
AccII CGCG 2 cut(s) 452, 1764
AccIII TCCGGA 2 cut(s) 654, 1505
AciI CCGC 6 cut(s) 452, 998, 1546, 1647, 1650, 1764
AclWI GGATC 7 cut(s) 173, 248, 261, 571, 960, 1213, 1456
AcoI YGGCCR 2 cut(s) 348, 1002
AcsI RAATTY 3 cut(s) 468, 875, 1623
AcuI CTGAAG 5 cut(s) 356, 767, 1030, 1518, 1724
AcyI GRCGYC 1 cut(s) 1305
AfaI GTAC 4 cut(s) 1190, 1436, 1553, 1674
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 7 cut(s) 75, 212, 582, 1261, 1682, 1729, 1730
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 6 cut(s) 38, 227, 273, 311, 1394, 1744
AjnI CCWGG 2 cut(s) 69, 1757
AjuI GAANNNNNNNTTGG 2 cut(s) 1386, 1418
AleI CACNNNNGTG 1 cut(s) 1685
AluBI AGCT 6 cut(s) 171, 304, 745, 769, 1134, 1229
AluI AGCT 6 cut(s) 171, 304, 745, 769, 1134, 1229
AlwI GGATC 7 cut(s) 173, 248, 261, 571, 960, 1213, 1456
Aor13HI TCCGGA 2 cut(s) 654, 1505
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 5 cut(s) 66, 262, 348, 757, 1002
ApeKI GCWGC 4 cut(s) 862, 957, 1134, 1184
ApoI RAATTY 3 cut(s) 468, 875, 1623
ArsI GACNNNNNNTTYG 2 cut(s) 1058, 1090
Asp700I GAANNNNTTC 1 cut(s) 1217
AspLEI GCGC 4 cut(s) 149, 452, 713, 1764
AspS9I GGNCC 7 cut(s) 52, 67, 686, 757, 869, 1126, 1755
AsuC2I CCSGG 1 cut(s) 950
AsuHPI GGTGA 3 cut(s) 439, 1303, 1601
AsuII TTCGAA 1 cut(s) 993
AvaII GGWCC 5 cut(s) 52, 686, 869, 1126, 1755
BaeGI GKGCMC 1 cut(s) 335
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 1423
BbsI GAAGAC 3 cut(s) 428, 612, 1506
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 4 cut(s) 874, 969, 1121, 1171
BccI CCATC 6 cut(s) 492, 616, 824, 845, 887, 1259
BceAI ACGGC 2 cut(s) 684, 1292
BcgI CGANNNNNNTGC 2 cut(s) 1369, 1403
BciT130I CCWGG 2 cut(s) 71, 1759
BcnI CCSGG 1 cut(s) 950
BfaI CTAG 1 cut(s) 1095
BfmI CTRYAG 2 cut(s) 1062, 1230
BfoI RGCGCY 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 469
BglII AGATCT 1 cut(s) 1493
BisI GCNGC 6 cut(s) 863, 958, 1135, 1185, 1647, 1650
BlsI GCNGC 6 cut(s) 864, 959, 1136, 1186, 1648, 1651
Bme1390I CCNGG 3 cut(s) 71, 950, 1759
Bme18I GGWCC 5 cut(s) 52, 686, 869, 1126, 1755
BmgT120I GGNCC 7 cut(s) 52, 67, 686, 757, 869, 1126, 1755
BmiI GGNNCC 5 cut(s) 54, 255, 687, 1127, 1425
BmrFI CCNGG 3 cut(s) 71, 950, 1759
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 6 cut(s) 562, 888, 1012, 1385, 1495, 1702
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 3 cut(s) 428, 612, 1506
BpmI CTGGAG 2 cut(s) 92, 189
Bpu10I CCTNAGC 2 cut(s) 753, 1130
Bpu14I TTCGAA 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 758, 1616
BpuMI CCSGG 1 cut(s) 950
Bsa29I ATCGAT 1 cut(s) 1379
BsaAI YACGTR 1 cut(s) 1555
BsaHI GRCGYC 1 cut(s) 1305
BsaJI CCNNGG 5 cut(s) 48, 69, 1164, 1653, 1680
BsaWI WCCGGW 4 cut(s) 654, 688, 1300, 1505
Bsc4I CCNNNNNNNGG 7 cut(s) 75, 212, 582, 1261, 1682, 1729, 1730
Bse118I RCCGGY 1 cut(s) 1752
Bse1I ACTGG 3 cut(s) 206, 284, 1220
Bse3DI GCAATG 5 cut(s) 406, 675, 832, 1371, 1414
BseAI TCCGGA 2 cut(s) 654, 1505
BseBI CCWGG 2 cut(s) 71, 1759
BseCI ATCGAT 1 cut(s) 1379
BseDI CCNNGG 5 cut(s) 48, 69, 1164, 1653, 1680
BseGI GGATG 7 cut(s) 503, 651, 903, 1027, 1251, 1486, 1717
BseLI CCNNNNNNNGG 7 cut(s) 75, 212, 582, 1261, 1682, 1729, 1730
BseMI GCAATG 5 cut(s) 406, 675, 832, 1371, 1414
BseMII CTCAG 4 cut(s) 744, 954, 1121, 1200
BseNI ACTGG 3 cut(s) 206, 284, 1220
BseRI GAGGAG 2 cut(s) 136, 721
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 4 cut(s) 874, 969, 1121, 1171
BseYI CCCAGC 1 cut(s) 1122
Bsh1236I CGCG 2 cut(s) 452, 1764
BshFI GGCC 5 cut(s) 68, 264, 350, 759, 1004
BshNI GGYRCC 1 cut(s) 1423
BshVI ATCGAT 1 cut(s) 1379
BsiSI CCGG 8 cut(s) 351, 655, 689, 949, 1301, 1506, 1569, 1753
BslFI GGGAC 8 cut(s) 554, 662, 699, 847, 1126, 1139, 1337, 1646
BslI CCNNNNNNNGG 7 cut(s) 75, 212, 582, 1261, 1682, 1729, 1730
BsmFI GGGAC 8 cut(s) 554, 662, 699, 847, 1126, 1139, 1337, 1646
BsnI GGCC 5 cut(s) 68, 264, 350, 759, 1004
Bsp119I TTCGAA 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 2 cut(s) 654, 1505
Bsp143I GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
BspACI CCGC 6 cut(s) 452, 998, 1546, 1647, 1650, 1764
BspANI GGCC 5 cut(s) 68, 264, 350, 759, 1004
BspCNI CTCAG 4 cut(s) 745, 955, 1122, 1201
BspDI ATCGAT 1 cut(s) 1379
BspEI TCCGGA 2 cut(s) 654, 1505
BspFNI CGCG 2 cut(s) 452, 1764
BspLI GGNNCC 5 cut(s) 54, 255, 687, 1127, 1425
BspMAI CTGCAG 1 cut(s) 1066
BspMI ACCTGC 1 cut(s) 469
BspPI GGATC 7 cut(s) 173, 248, 261, 571, 960, 1213, 1456
BspT104I TTCGAA 1 cut(s) 993
BspT107I GGYRCC 1 cut(s) 1423
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 5 cut(s) 406, 675, 832, 1371, 1414
BsrFI RCCGGY 1 cut(s) 1752
BsrI ACTGG 3 cut(s) 206, 284, 1220
BssAI RCCGGY 1 cut(s) 1752
BssECI CCNNGG 5 cut(s) 48, 69, 1164, 1653, 1680
BssMI GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
BssNI GRCGYC 1 cut(s) 1305
Bst2UI CCWGG 2 cut(s) 71, 1759
Bst4CI ACNGT 4 cut(s) 427, 1073, 1234, 1443
Bst6I CTCTTC 1 cut(s) 1049
BstACI GRCGYC 1 cut(s) 1305
BstAFI CTTAAG 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 1555
BstBI TTCGAA 1 cut(s) 993
BstC8I GCNNGC 4 cut(s) 577, 1227, 1358, 1688
BstDEI CTNAG 4 cut(s) 753, 963, 1130, 1209
BstDSI CCRYGG 1 cut(s) 1680
BstF5I GGATG 7 cut(s) 503, 651, 903, 1027, 1251, 1486, 1717
BstFNI CGCG 2 cut(s) 452, 1764
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 4 cut(s) 149, 452, 713, 1764
BstKTI GATC 7 cut(s) 168, 256, 566, 955, 1208, 1451, 1496
BstMBI GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
BstMWI GCNNNNNNNGC 3 cut(s) 182, 290, 458
BstNI CCWGG 2 cut(s) 71, 1759
BstNSI RCATGY 2 cut(s) 409, 1531
BstSCI CCNGG 3 cut(s) 69, 948, 1757
BstSFI CTRYAG 2 cut(s) 1062, 1230
BstSLI GKGCMC 1 cut(s) 335
BstSNI TACGTA 1 cut(s) 1555
BstUI CGCG 2 cut(s) 452, 1764
BstV1I GCAGC 4 cut(s) 874, 969, 1121, 1171
BstV2I GAAGAC 3 cut(s) 428, 612, 1506
BstX2I RGATCY 3 cut(s) 253, 1205, 1493
BstXI CCANNNNNNTGG 2 cut(s) 601, 937
BstYI RGATCY 3 cut(s) 253, 1205, 1493
Bsu15I ATCGAT 1 cut(s) 1379
BsuRI GGCC 5 cut(s) 68, 264, 350, 759, 1004
BsuTUI ATCGAT 1 cut(s) 1379
BtgI CCRYGG 1 cut(s) 1680
BtsCI GGATG 7 cut(s) 503, 651, 903, 1027, 1251, 1486, 1717
BtsIMutI CAGTG 3 cut(s) 565, 960, 1239
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 4 cut(s) 577, 1227, 1358, 1688
CfoI GCGC 4 cut(s) 149, 452, 713, 1764
Cfr10I RCCGGY 1 cut(s) 1752
Cfr13I GGNCC 7 cut(s) 52, 67, 686, 757, 869, 1126, 1755
ClaI ATCGAT 1 cut(s) 1379
CseI GACGC 1 cut(s) 1313
Csp6I GTAC 4 cut(s) 1189, 1435, 1552, 1673
CviAII CATG 9 cut(s) 113, 221, 406, 490, 787, 866, 1256, 1528, 1735
CviQI GTAC 4 cut(s) 1189, 1435, 1552, 1673
DdeI CTNAG 4 cut(s) 753, 963, 1130, 1209
DpnI GATC 7 cut(s) 167, 255, 565, 954, 1207, 1450, 1495
DpnII GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
EaeI YGGCCR 2 cut(s) 348, 1002
Eam1104I CTCTTC 1 cut(s) 1049
EarI CTCTTC 1 cut(s) 1049
Eco105I TACGTA 1 cut(s) 1555
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 5 cut(s) 52, 686, 869, 1126, 1755
Eco47III AGCGCT 1 cut(s) 148
Eco57I CTGAAG 5 cut(s) 356, 767, 1030, 1518, 1724
EcoO109I RGGNCCY 3 cut(s) 52, 757, 1126
EcoRII CCWGG 2 cut(s) 69, 1757
EcoRV GATATC 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 1027
FaeI CATG 9 cut(s) 116, 224, 409, 493, 790, 869, 1259, 1531, 1738
FaqI GGGAC 8 cut(s) 554, 662, 699, 847, 1126, 1139, 1337, 1646
FatI CATG 9 cut(s) 112, 220, 405, 489, 786, 865, 1255, 1527, 1734
FauNDI CATATG 1 cut(s) 1666
Fnu4HI GCNGC 6 cut(s) 863, 958, 1135, 1185, 1647, 1650
FokI GGATG 7 cut(s) 510, 638, 910, 1034, 1238, 1473, 1724
Fsp4HI GCNGC 6 cut(s) 863, 958, 1135, 1185, 1647, 1650
FspBI CTAG 1 cut(s) 1095
GlaI GCGC 4 cut(s) 148, 451, 712, 1763
GluI GCNGC 6 cut(s) 863, 958, 1135, 1185, 1647, 1650
GsaI CCCAGC 1 cut(s) 1126
GsuI CTGGAG 2 cut(s) 92, 189
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 5 cut(s) 68, 264, 350, 759, 1004
HapII CCGG 8 cut(s) 351, 655, 689, 949, 1301, 1506, 1569, 1753
HgaI GACGC 1 cut(s) 1313
HhaI GCGC 4 cut(s) 149, 452, 713, 1764
Hin1I GRCGYC 1 cut(s) 1305
Hin1II CATG 9 cut(s) 116, 224, 409, 493, 790, 869, 1259, 1531, 1738
Hin6I GCGC 4 cut(s) 147, 450, 711, 1762
HinP1I GCGC 4 cut(s) 147, 450, 711, 1762
HincII GTYRAC 2 cut(s) 1158, 1174
HindII GTYRAC 2 cut(s) 1158, 1174
HpaII CCGG 8 cut(s) 351, 655, 689, 949, 1301, 1506, 1569, 1753
HphI GGTGA 3 cut(s) 439, 1303, 1601
Hpy166II GTNNAC 5 cut(s) 980, 1158, 1174, 1294, 1631
Hpy188III TCNNGA 7 cut(s) 386, 655, 737, 872, 1469, 1506, 1628
Hpy8I GTNNAC 5 cut(s) 980, 1158, 1174, 1294, 1631
HpyAV CCTTC 7 cut(s) 32, 85, 305, 380, 742, 1048, 1699
HpyCH4III ACNGT 4 cut(s) 427, 1073, 1234, 1443
HpyCH4IV ACGT 3 cut(s) 390, 722, 1554
HpyCH4V TGCA 8 cut(s) 191, 293, 1025, 1064, 1376, 1486, 1531, 1715
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 290, 458
HpyF3I CTNAG 4 cut(s) 753, 963, 1130, 1209
HpySE526I ACGT 3 cut(s) 390, 722, 1554
Hsp92I GRCGYC 1 cut(s) 1305
Hsp92II CATG 9 cut(s) 116, 224, 409, 493, 790, 869, 1259, 1531, 1738
HspAI GCGC 4 cut(s) 147, 450, 711, 1762
Kpn2I TCCGGA 2 cut(s) 654, 1505
Kzo9I GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
LmnI GCTCC 2 cut(s) 708, 1080
Lsp1109I GCAGC 4 cut(s) 874, 969, 1121, 1171
LweI GCATC 6 cut(s) 562, 888, 1012, 1385, 1495, 1702
MaeI CTAG 1 cut(s) 1095
MaeII ACGT 3 cut(s) 390, 722, 1554
MaeIII GTNAC 2 cut(s) 208, 520
MalI GATC 7 cut(s) 167, 255, 565, 954, 1207, 1450, 1495
MboI GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
MboII GAAGA 6 cut(s) 91, 243, 433, 617, 1036, 1511
MfeI CAATTG 1 cut(s) 680
MflI RGATCY 3 cut(s) 253, 1205, 1493
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 7 cut(s) 468, 549, 680, 714, 875, 918, 1623
MlyI GAGTC 5 cut(s) 146, 518, 890, 1481, 1496
Mph1103I ATGCAT 1 cut(s) 1027
MroI TCCGGA 2 cut(s) 654, 1505
MroXI GAANNNNTTC 1 cut(s) 1217
MseI TTAA 3 cut(s) 249, 642, 1563
MslI CAYNNNNRTG 4 cut(s) 785, 791, 1381, 1685
MspA1I CMGCKG 1 cut(s) 1546
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 8 cut(s) 351, 655, 689, 949, 1301, 1506, 1569, 1753
MspR9I CCNGG 3 cut(s) 71, 950, 1759
MunI CAATTG 1 cut(s) 680
MvaI CCWGG 2 cut(s) 71, 1759
MvnI CGCG 2 cut(s) 452, 1764
MwoI GCNNNNNNNGC 3 cut(s) 182, 290, 458
NciI CCSGG 1 cut(s) 950
NdeI CATATG 1 cut(s) 1666
NdeII GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
NlaIII CATG 9 cut(s) 116, 224, 409, 493, 790, 869, 1259, 1531, 1738
NlaIV GGNNCC 5 cut(s) 54, 255, 687, 1127, 1425
NmeAIII GCCGAG 3 cut(s) 1030, 1189, 1678
NmuCI GTSAC 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 2 cut(s) 409, 1531
NspV TTCGAA 1 cut(s) 993
OliI CACNNNNGTG 1 cut(s) 1685
PaqCI CACCTGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 1217
PfeI GAWTC 5 cut(s) 97, 216, 658, 1106, 1340
PkrI GCNGC 6 cut(s) 864, 959, 1136, 1186, 1648, 1651
PleI GAGTC 5 cut(s) 145, 517, 889, 1480, 1496
PpsI GAGTC 5 cut(s) 145, 517, 889, 1480, 1496
Ppu21I YACGTR 1 cut(s) 1555
PpuMI RGGWCCY 2 cut(s) 52, 1126
Psp5II RGGWCCY 2 cut(s) 52, 1126
Psp6I CCWGG 2 cut(s) 69, 1757
PspFI CCCAGC 1 cut(s) 1122
PspGI CCWGG 2 cut(s) 69, 1757
PspN4I GGNNCC 5 cut(s) 54, 255, 687, 1127, 1425
PspPI GGNCC 7 cut(s) 52, 67, 686, 757, 869, 1126, 1755
PspPPI RGGWCCY 2 cut(s) 52, 1126
PstI CTGCAG 1 cut(s) 1066
PsuI RGATCY 3 cut(s) 253, 1205, 1493
RsaI GTAC 4 cut(s) 1190, 1436, 1553, 1674
RsaNI GTAC 4 cut(s) 1189, 1435, 1552, 1673
RseI CAYNNNNRTG 4 cut(s) 785, 791, 1381, 1685
SaqAI TTAA 3 cut(s) 249, 642, 1563
SatI GCNGC 6 cut(s) 863, 958, 1135, 1185, 1647, 1650
Sau3AI GATC 7 cut(s) 165, 253, 563, 952, 1205, 1448, 1493
Sau96I GGNCC 7 cut(s) 52, 67, 686, 757, 869, 1126, 1755
SchI GAGTC 5 cut(s) 146, 518, 890, 1481, 1496
ScrFI CCNGG 3 cut(s) 71, 950, 1759
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 6 cut(s) 562, 888, 1012, 1385, 1495, 1702
SfcI CTRYAG 2 cut(s) 1062, 1230
SfuI TTCGAA 1 cut(s) 993
SinI GGWCC 5 cut(s) 52, 686, 869, 1126, 1755
SmiMI CAYNNNNRTG 4 cut(s) 785, 791, 1381, 1685
SmlI CTYRAG 3 cut(s) 248, 737, 1595
SmoI CTYRAG 3 cut(s) 248, 737, 1595
SnaBI TACGTA 1 cut(s) 1555
Sse9I AATT 7 cut(s) 468, 549, 680, 714, 875, 918, 1623
SsiI CCGC 6 cut(s) 452, 998, 1546, 1647, 1650, 1764
SspI AATATT 1 cut(s) 1512
SspMI CTAG 1 cut(s) 1095
StyD4I CCNGG 3 cut(s) 69, 948, 1757
TaaI ACNGT 4 cut(s) 427, 1073, 1234, 1443
TaiI ACGT 3 cut(s) 393, 725, 1557
TaqI TCGA 4 cut(s) 993, 1101, 1238, 1379
TasI AATT 7 cut(s) 468, 549, 680, 714, 875, 918, 1623
TauI GCSGC 2 cut(s) 1649, 1652
TfiI GAWTC 5 cut(s) 97, 216, 658, 1106, 1340
Tru1I TTAA 3 cut(s) 249, 642, 1563
Tru9I TTAA 3 cut(s) 249, 642, 1563
TscAI CASTG 3 cut(s) 565, 967, 1239
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 4 cut(s) 862, 957, 1134, 1184
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 3 cut(s) 1425, 1635, 1751
TspRI CASTG 3 cut(s) 565, 967, 1239
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 5 cut(s) 52, 686, 869, 1126, 1755
XapI RAATTY 3 cut(s) 468, 875, 1623
XceI RCATGY 2 cut(s) 409, 1531
XmnI GAANNNNTTC 1 cut(s) 1217
XspI CTAG 1 cut(s) 1095
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.