Rh5DG239900

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000030
Physical Location & Seq
Reverse (-)
27385227 .. 27388266
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG239900.1

Sequence Viewer

Length: 2073 bp
ATGTCTTCCCTATCAGCTGGAAAGTTAGTTGCAACAATAGAAATGGGGTTTGGGTCACTTTATGAATTTCGCTGTACGAAAGTGAATCTCCCACTTTGCCAAGTGCTGGTTGAAAATTTTGACGTGGCGAACTCAAGCATCAACATTCATGGAAGGAACCTGACAATCACACATGAAGACTTTGAACGCATAATGGGCGTTAGGAATGGAGGTTGTGATGTGGAGGTTGAAGGAAACACCGAGGACCCTGATATATTGGCCCTGGAGAGGAAGATTTCGGGGAAGGAGAATCAGATAACAATACATGGATTGAGGAGGGTGCTGATTGAGTCTGAAAGCGCTGATGAGATATTTAGGATCAGCTTTGCCTTGTATGCCCTTGCAACCCTGCTATCTCCAGTAACAGGAATCCATGTCGAACGAAGATATCTTATTCCACTTAAGGATCCAAATGGCCTGTGTTCAAAAAACTGGGCAAAGTTTGCATTTGATAAGCTCGTTGAAGGGGTGTCATTGTTTCAGGGCACGGGGATTGGATTGGCCGGAGGTTGTATTCTGTTCCTTCAGTTGTTCTATCTGGACGTTGTTAGCAATGGCATGTCTGTTTTGCCGAAGACGGTGAAACCTGTTATGATATGGGGCGCGGACGAGGCAAAGAAAATTTATGAGCAGGTGGAGAGCATGGGGGGATGGAAAAGTGAGTCTGTTTATGTGACAAAGAGGTATTTGTGGGACAGAACAATTCAGTTCAGTGGATCAGTTGATGCCAGCACAGGGATAAAAACCAATGTCGTGGAAGACTTGTCAGAAGTGATGGCTGATGTGGGTGTCGTTAAAGGGGACATCCGGAATCTAAAGGCAATGGTCGGTCAATTGGGACCGGATATGTGCCGTTTGAGGAGCGCAATTCTGACGTTAGAAACATCTCTTGAGAAGCTGAAGGCTGAGGGCCTCTGTCAGCTTGTTTCAGACACTATCATGGGAGTGTTTGAGGATAAGCAGAATGATTATGTGGGCAATGATGGGACTGATGTTTTTGTTGATGGTCAAAAGCAGCATGGTCCAGAATTTGAGTCAGATGATGATGGGATGCCTAATGCTAAATCCAAAATTGTCATTTCCAATGAGGTGGTAGCATACCGGGATCGCAGCACTGAGGTTGAGAGAAGTGAACAGACGAGGTTCGAAGCGGTGGCCGAGATTTCAGAGAGGGATGCATACTTATTGGCATATCTCTTCAGCAAGAAGGTTTCTGCAGACGACAGTTTTGGGAGCAACGAAGTTGCTAGGTTCGAGGATTCAGGTGTATCTCGCTGGGACCTGAGCTGCTTGTCCCCAACGCAGTCGTTGACTGCCGAGGTTGTCAACATATCGGCTGCGTACTTGTGCCAGAGGGGATCTGAGAACTGGTTCTTGCCAGCTACAGTGTCGGAGCGTGCTAAGGAGATTTCGGCAGGTATGCTAGTGGAAGCTATTGTGCCTTCGACCATTACACTCTGCAAACTGGGAAGATTTATTGGCCGATTATTGTCATGCAATAAGATGTTCCTCCCCATCCATGACGGGGTTGTGAAGCATTGGTTTTTGGCTGTGGTGAACATACCGGACGCCGTGTGTGAAATATGGGACAACAACCCTGTTGATTCTGCTAATACACGCAGGCAGGAATATGCCATTGCATCGATGTGTTTGCTTGAAAAAGTATTTGGCAATGAACTGCGAATGGCACCCGACCTGTACGCACGGTTTGGATCATTCTCCATTAGTTATCCAGAGTCTTGCCCTCTGCATCCCAGATCTGAAGACTCCGGAATATTTGTGATAAGAAACATGCAGTTTTACAGACAGCGGTGGTACCTAGGGTTTAACTCCGGCGACCAGAGGGTTCGTATGGCACTTGAGATTGTCAATCACCCTCACAATGAAATTCGTGAACGGGTGTGGAGTGCCGCCGCCGAGGAAGTCCCATATGATGTACCTACCACGGGCGTGCCACCATTATCTCTGAAGGAGGATGCAGTTCTCCCAACTTCGGGCATGAAGTTCAATCCACGCCGGTCCAGGCGCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

690

Amino Acids

76.79

Weight (kDa)

5.21

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 512 - 615 1.1e-07 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 661
Acc36I ACCTGC 2 cut(s) 661, 1445
Acc65I GGTACC 1 cut(s) 1854
AccB1I GGYRCC 2 cut(s) 1726, 1854
AccB7I CCANNNNNTGG 1 cut(s) 106
AccII CGCG 2 cut(s) 644, 2067
AccIII TCCGGA 2 cut(s) 846, 1808
AciI CCGC 6 cut(s) 644, 1190, 1849, 1950, 1953, 2067
AclWI GGATC 7 cut(s) 365, 440, 453, 763, 1152, 1405, 1759
AcoI YGGCCR 3 cut(s) 540, 1194, 1519
AcsI RAATTY 5 cut(s) 65, 115, 660, 1067, 1926
AcuI CTGAAG 5 cut(s) 548, 959, 1222, 1821, 2027
AcyI GRCGYC 1 cut(s) 1608
AfaI GTAC 5 cut(s) 76, 1382, 1739, 1856, 1977
AfeI AGCGCT 1 cut(s) 340
AfiI CCNNNNNNNGG 8 cut(s) 106, 267, 404, 774, 1564, 1985, 2032, 2033
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 7 cut(s) 113, 185, 230, 465, 503, 1697, 2047
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 2 cut(s) 261, 2060
AjuI GAANNNNNNNTTGG 4 cut(s) 33, 65, 1689, 1721
AleI CACNNNNGTG 1 cut(s) 1988
AluBI AGCT 8 cut(s) 17, 363, 496, 937, 961, 1326, 1421, 1472
AluI AGCT 8 cut(s) 17, 363, 496, 937, 961, 1326, 1421, 1472
AlwI GGATC 7 cut(s) 365, 440, 453, 763, 1152, 1405, 1759
Aor13HI TCCGGA 2 cut(s) 846, 1808
Aor51HI AGCGCT 1 cut(s) 340
AoxI GGCC 6 cut(s) 258, 454, 540, 949, 1194, 1519
ApeKI GCWGC 4 cut(s) 1054, 1149, 1326, 1376
ApoI RAATTY 5 cut(s) 65, 115, 660, 1067, 1926
ArsI GACNNNNNNTTYG 2 cut(s) 1250, 1282
Asp700I GAANNNNTTC 1 cut(s) 1409
Asp718I GGTACC 1 cut(s) 1854
AspA2I CCTAGG 1 cut(s) 1858
AspLEI GCGC 4 cut(s) 341, 644, 905, 2067
AspS9I GGNCC 7 cut(s) 244, 259, 878, 949, 1061, 1318, 2058
AsuC2I CCSGG 1 cut(s) 1142
AsuHPI GGTGA 3 cut(s) 631, 1606, 1904
AsuII TTCGAA 1 cut(s) 1185
AvaII GGWCC 5 cut(s) 244, 878, 1061, 1318, 2058
AvrII CCTAGG 1 cut(s) 1858
BaeGI GKGCMC 1 cut(s) 527
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 2 cut(s) 1726, 1854
BbsI GAAGAC 4 cut(s) 183, 620, 804, 1809
BbvCI CCTCAGC 1 cut(s) 945
BbvI GCAGC 4 cut(s) 1066, 1161, 1313, 1363
BccI CCATC 6 cut(s) 684, 808, 1016, 1037, 1079, 1562
BceAI ACGGC 2 cut(s) 876, 1595
BcgI CGANNNNNNTGC 2 cut(s) 1672, 1706
BciT130I CCWGG 2 cut(s) 263, 2062
BcnI CCSGG 1 cut(s) 1142
BfaI CTAG 3 cut(s) 1287, 1463, 1859
BfmI CTRYAG 2 cut(s) 1254, 1422
BfoI RGCGCY 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 440
BfuAI ACCTGC 2 cut(s) 661, 1445
BglII AGATCT 1 cut(s) 1796
BisI GCNGC 6 cut(s) 1055, 1150, 1327, 1377, 1950, 1953
BlnI CCTAGG 1 cut(s) 1858
BlsI GCNGC 6 cut(s) 1056, 1151, 1328, 1378, 1951, 1954
Bme1390I CCNGG 3 cut(s) 263, 1142, 2062
Bme18I GGWCC 5 cut(s) 244, 878, 1061, 1318, 2058
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 7 cut(s) 244, 259, 878, 949, 1061, 1318, 2058
BmiI GGNNCC 7 cut(s) 158, 246, 447, 879, 1319, 1728, 1856
BmrFI CCNGG 3 cut(s) 263, 1142, 2062
BmrI ACTGGG 2 cut(s) 481, 1514
BmsI GCATC 7 cut(s) 147, 754, 1080, 1204, 1688, 1798, 2005
BmuI ACTGGG 2 cut(s) 481, 1514
BpiI GAAGAC 4 cut(s) 183, 620, 804, 1809
BpmI CTGGAG 2 cut(s) 284, 381
Bpu10I CCTNAGC 3 cut(s) 945, 1322, 1440
Bpu14I TTCGAA 1 cut(s) 1185
BpuEI CTTGAG 3 cut(s) 118, 950, 1919
BpuMI CCSGG 1 cut(s) 1142
Bsa29I ATCGAT 1 cut(s) 1682
BsaHI GRCGYC 1 cut(s) 1608
BsaJI CCNNGG 6 cut(s) 240, 261, 1356, 1858, 1956, 1983
BsaWI WCCGGW 4 cut(s) 846, 880, 1603, 1808
Bsc4I CCNNNNNNNGG 8 cut(s) 106, 267, 404, 774, 1564, 1985, 2032, 2033
Bse118I RCCGGY 1 cut(s) 2055
Bse1I ACTGG 4 cut(s) 398, 476, 1412, 1509
Bse3DI GCAATG 5 cut(s) 598, 867, 1024, 1674, 1717
BseAI TCCGGA 2 cut(s) 846, 1808
BseBI CCWGG 2 cut(s) 263, 2062
BseCI ATCGAT 1 cut(s) 1682
BseDI CCNNGG 6 cut(s) 240, 261, 1356, 1858, 1956, 1983
BseGI GGATG 7 cut(s) 695, 843, 1095, 1219, 1554, 1789, 2020
BseLI CCNNNNNNNGG 8 cut(s) 106, 267, 404, 774, 1564, 1985, 2032, 2033
BseMI GCAATG 5 cut(s) 598, 867, 1024, 1674, 1717
BseMII CTCAG 4 cut(s) 936, 1146, 1313, 1392
BseNI ACTGG 4 cut(s) 398, 476, 1412, 1509
BseRI GAGGAG 2 cut(s) 328, 913
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 4 cut(s) 1066, 1161, 1313, 1363
BseYI CCCAGC 1 cut(s) 1314
Bsh1236I CGCG 2 cut(s) 644, 2067
BshFI GGCC 6 cut(s) 260, 456, 542, 951, 1196, 1521
BshNI GGYRCC 2 cut(s) 1726, 1854
BshVI ATCGAT 1 cut(s) 1682
BsiSI CCGG 8 cut(s) 543, 847, 881, 1141, 1604, 1809, 1872, 2056
BslFI GGGAC 8 cut(s) 746, 854, 891, 1039, 1318, 1331, 1640, 1949
BslI CCNNNNNNNGG 8 cut(s) 106, 267, 404, 774, 1564, 1985, 2032, 2033
BsmFI GGGAC 8 cut(s) 746, 854, 891, 1039, 1318, 1331, 1640, 1949
BsnI GGCC 6 cut(s) 260, 456, 542, 951, 1196, 1521
Bsp119I TTCGAA 1 cut(s) 1185
Bsp1286I GDGCHC 1 cut(s) 527
Bsp13I TCCGGA 2 cut(s) 846, 1808
Bsp143I GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
BspACI CCGC 6 cut(s) 644, 1190, 1849, 1950, 1953, 2067
BspANI GGCC 6 cut(s) 260, 456, 542, 951, 1196, 1521
BspCNI CTCAG 4 cut(s) 937, 1147, 1314, 1393
BspDI ATCGAT 1 cut(s) 1682
BspEI TCCGGA 2 cut(s) 846, 1808
BspFNI CGCG 2 cut(s) 644, 2067
BspLI GGNNCC 7 cut(s) 158, 246, 447, 879, 1319, 1728, 1856
BspMAI CTGCAG 1 cut(s) 1258
BspMI ACCTGC 2 cut(s) 661, 1445
BspPI GGATC 7 cut(s) 365, 440, 453, 763, 1152, 1405, 1759
BspT104I TTCGAA 1 cut(s) 1185
BspT107I GGYRCC 2 cut(s) 1726, 1854
BspTI CTTAAG 1 cut(s) 440
BsrDI GCAATG 5 cut(s) 598, 867, 1024, 1674, 1717
BsrFI RCCGGY 1 cut(s) 2055
BsrI ACTGG 4 cut(s) 398, 476, 1412, 1509
BssAI RCCGGY 1 cut(s) 2055
BssECI CCNNGG 6 cut(s) 240, 261, 1356, 1858, 1956, 1983
BssMI GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
BssNI GRCGYC 1 cut(s) 1608
BssT1I CCWWGG 1 cut(s) 1858
Bst2UI CCWGG 2 cut(s) 263, 2062
Bst4CI ACNGT 4 cut(s) 619, 1265, 1426, 1746
Bst6I CTCTTC 1 cut(s) 1241
BstACI GRCGYC 1 cut(s) 1608
BstAFI CTTAAG 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 1185
BstC8I GCNNGC 5 cut(s) 769, 1419, 1437, 1661, 1991
BstDEI CTNAG 5 cut(s) 945, 1155, 1322, 1401, 1440
BstDSI CCRYGG 1 cut(s) 1983
BstF5I GGATG 7 cut(s) 695, 843, 1095, 1219, 1554, 1789, 2020
BstFNI CGCG 2 cut(s) 644, 2067
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 4 cut(s) 341, 644, 905, 2067
BstKTI GATC 7 cut(s) 360, 448, 758, 1147, 1400, 1754, 1799
BstMBI GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
BstMWI GCNNNNNNNGC 4 cut(s) 195, 374, 482, 650
BstNI CCWGG 2 cut(s) 263, 2062
BstNSI RCATGY 2 cut(s) 601, 1834
BstSCI CCNGG 3 cut(s) 261, 1140, 2060
BstSFI CTRYAG 2 cut(s) 1254, 1422
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 2 cut(s) 644, 2067
BstV1I GCAGC 4 cut(s) 1066, 1161, 1313, 1363
BstV2I GAAGAC 4 cut(s) 183, 620, 804, 1809
BstX2I RGATCY 3 cut(s) 445, 1397, 1796
BstXI CCANNNNNNTGG 2 cut(s) 793, 1129
BstYI RGATCY 3 cut(s) 445, 1397, 1796
Bsu15I ATCGAT 1 cut(s) 1682
BsuRI GGCC 6 cut(s) 260, 456, 542, 951, 1196, 1521
BsuTUI ATCGAT 1 cut(s) 1682
BtgI CCRYGG 1 cut(s) 1983
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 7 cut(s) 695, 843, 1095, 1219, 1554, 1789, 2020
BtsIMutI CAGTG 3 cut(s) 757, 1152, 1431
BveI ACCTGC 2 cut(s) 661, 1445
Cac8I GCNNGC 5 cut(s) 769, 1419, 1437, 1661, 1991
CfoI GCGC 4 cut(s) 341, 644, 905, 2067
Cfr10I RCCGGY 1 cut(s) 2055
Cfr13I GGNCC 7 cut(s) 244, 259, 878, 949, 1061, 1318, 2058
ClaI ATCGAT 1 cut(s) 1682
CseI GACGC 1 cut(s) 1616
Csp6I GTAC 5 cut(s) 75, 1381, 1738, 1855, 1976
CviQI GTAC 5 cut(s) 75, 1381, 1738, 1855, 1976
DdeI CTNAG 5 cut(s) 945, 1155, 1322, 1401, 1440
DpnI GATC 7 cut(s) 359, 447, 757, 1146, 1399, 1753, 1798
DpnII GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
EaeI YGGCCR 3 cut(s) 540, 1194, 1519
Eam1104I CTCTTC 1 cut(s) 1241
EarI CTCTTC 1 cut(s) 1241
Eco130I CCWWGG 1 cut(s) 1858
Eco32I GATATC 1 cut(s) 428
Eco47I GGWCC 5 cut(s) 244, 878, 1061, 1318, 2058
Eco47III AGCGCT 1 cut(s) 340
Eco57I CTGAAG 5 cut(s) 548, 959, 1222, 1821, 2027
EcoO109I RGGNCCY 3 cut(s) 244, 949, 1318
EcoRII CCWGG 2 cut(s) 261, 2060
EcoRV GATATC 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 1858
EcoT22I ATGCAT 1 cut(s) 1219
ErhI CCWWGG 1 cut(s) 1858
FaqI GGGAC 8 cut(s) 746, 854, 891, 1039, 1318, 1331, 1640, 1949
FauNDI CATATG 1 cut(s) 1969
Fnu4HI GCNGC 6 cut(s) 1055, 1150, 1327, 1377, 1950, 1953
FokI GGATG 7 cut(s) 702, 830, 1102, 1226, 1541, 1776, 2027
Fsp4HI GCNGC 6 cut(s) 1055, 1150, 1327, 1377, 1950, 1953
FspBI CTAG 3 cut(s) 1287, 1463, 1859
GlaI GCGC 4 cut(s) 340, 643, 904, 2066
GluI GCNGC 6 cut(s) 1055, 1150, 1327, 1377, 1950, 1953
GsaI CCCAGC 1 cut(s) 1318
GsuI CTGGAG 2 cut(s) 284, 381
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 6 cut(s) 260, 456, 542, 951, 1196, 1521
HapII CCGG 8 cut(s) 543, 847, 881, 1141, 1604, 1809, 1872, 2056
HgaI GACGC 1 cut(s) 1616
HhaI GCGC 4 cut(s) 341, 644, 905, 2067
Hin1I GRCGYC 1 cut(s) 1608
Hin6I GCGC 4 cut(s) 339, 642, 903, 2065
HinP1I GCGC 4 cut(s) 339, 642, 903, 2065
HincII GTYRAC 2 cut(s) 1350, 1366
HindII GTYRAC 2 cut(s) 1350, 1366
HpaII CCGG 8 cut(s) 543, 847, 881, 1141, 1604, 1809, 1872, 2056
HphI GGTGA 3 cut(s) 631, 1606, 1904
Hpy166II GTNNAC 5 cut(s) 1172, 1350, 1366, 1597, 1934
Hpy188III TCNNGA 7 cut(s) 578, 847, 929, 1064, 1772, 1809, 1931
Hpy8I GTNNAC 5 cut(s) 1172, 1350, 1366, 1597, 1934
HpyAV CCTTC 9 cut(s) 147, 224, 277, 497, 572, 934, 1240, 1491, 2002
HpyCH4III ACNGT 4 cut(s) 619, 1265, 1426, 1746
HpyCH4IV ACGT 3 cut(s) 123, 582, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 195, 374, 482, 650
HpyF3I CTNAG 5 cut(s) 945, 1155, 1322, 1401, 1440
HpySE526I ACGT 3 cut(s) 123, 582, 914
Hsp92I GRCGYC 1 cut(s) 1608
HspAI GCGC 4 cut(s) 339, 642, 903, 2065
Kpn2I TCCGGA 2 cut(s) 846, 1808
KpnI GGTACC 1 cut(s) 1858
Kzo9I GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
LmnI GCTCC 3 cut(s) 900, 1272, 1432
Lsp1109I GCAGC 4 cut(s) 1066, 1161, 1313, 1363
LweI GCATC 7 cut(s) 147, 754, 1080, 1204, 1688, 1798, 2005
MaeI CTAG 3 cut(s) 1287, 1463, 1859
MaeII ACGT 3 cut(s) 123, 582, 914
MaeIII GTNAC 3 cut(s) 54, 400, 712
MalI GATC 7 cut(s) 359, 447, 757, 1146, 1399, 1753, 1798
MboI GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
MboII GAAGA 8 cut(s) 188, 283, 435, 625, 809, 1228, 1521, 1814
MfeI CAATTG 1 cut(s) 872
MflI RGATCY 3 cut(s) 445, 1397, 1796
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 9 cut(s) 65, 115, 660, 741, 872, 906, 1067, 1110, 1926
MlyI GAGTC 5 cut(s) 338, 710, 1082, 1784, 1799
MmeI TCCRAC 1 cut(s) 1410
Mph1103I ATGCAT 1 cut(s) 1219
MroI TCCGGA 2 cut(s) 846, 1808
MroXI GAANNNNTTC 1 cut(s) 1409
MseI TTAA 3 cut(s) 441, 834, 1866
MslI CAYNNNNRTG 4 cut(s) 977, 983, 1684, 1988
MspA1I CMGCKG 2 cut(s) 17, 1849
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 8 cut(s) 543, 847, 881, 1141, 1604, 1809, 1872, 2056
MspR9I CCNGG 3 cut(s) 263, 1142, 2062
MunI CAATTG 1 cut(s) 872
MvaI CCWGG 2 cut(s) 263, 2062
MvnI CGCG 2 cut(s) 644, 2067
MwoI GCNNNNNNNGC 4 cut(s) 195, 374, 482, 650
NciI CCSGG 1 cut(s) 1142
NdeI CATATG 1 cut(s) 1969
NdeII GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
NlaIV GGNNCC 7 cut(s) 158, 246, 447, 879, 1319, 1728, 1856
NmeAIII GCCGAG 3 cut(s) 1222, 1381, 1981
NmuCI GTSAC 2 cut(s) 54, 712
NsiI ATGCAT 1 cut(s) 1219
NspI RCATGY 2 cut(s) 601, 1834
NspV TTCGAA 1 cut(s) 1185
OliI CACNNNNGTG 1 cut(s) 1988
PaqCI CACCTGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 1409
PfeI GAWTC 6 cut(s) 85, 289, 408, 850, 1298, 1643
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 6 cut(s) 1056, 1151, 1328, 1378, 1951, 1954
PleI GAGTC 5 cut(s) 337, 709, 1081, 1783, 1799
PpsI GAGTC 5 cut(s) 337, 709, 1081, 1783, 1799
PpuMI RGGWCCY 2 cut(s) 244, 1318
Psp5II RGGWCCY 2 cut(s) 244, 1318
Psp6I CCWGG 2 cut(s) 261, 2060
PspFI CCCAGC 1 cut(s) 1314
PspGI CCWGG 2 cut(s) 261, 2060
PspN4I GGNNCC 7 cut(s) 158, 246, 447, 879, 1319, 1728, 1856
PspPI GGNCC 7 cut(s) 244, 259, 878, 949, 1061, 1318, 2058
PspPPI RGGWCCY 2 cut(s) 244, 1318
PstI CTGCAG 1 cut(s) 1258
PsuI RGATCY 3 cut(s) 445, 1397, 1796
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 5 cut(s) 76, 1382, 1739, 1856, 1977
RsaNI GTAC 5 cut(s) 75, 1381, 1738, 1855, 1976
RseI CAYNNNNRTG 4 cut(s) 977, 983, 1684, 1988
SaqAI TTAA 3 cut(s) 441, 834, 1866
SatI GCNGC 6 cut(s) 1055, 1150, 1327, 1377, 1950, 1953
Sau3AI GATC 7 cut(s) 357, 445, 755, 1144, 1397, 1751, 1796
Sau96I GGNCC 7 cut(s) 244, 259, 878, 949, 1061, 1318, 2058
SchI GAGTC 5 cut(s) 338, 710, 1082, 1784, 1799
ScrFI CCNGG 3 cut(s) 263, 1142, 2062
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 7 cut(s) 147, 754, 1080, 1204, 1688, 1798, 2005
SfcI CTRYAG 2 cut(s) 1254, 1422
SfuI TTCGAA 1 cut(s) 1185
SinI GGWCC 5 cut(s) 244, 878, 1061, 1318, 2058
SmiMI CAYNNNNRTG 4 cut(s) 977, 983, 1684, 1988
SmlI CTYRAG 4 cut(s) 133, 440, 929, 1898
SmoI CTYRAG 4 cut(s) 133, 440, 929, 1898
Sse9I AATT 9 cut(s) 65, 115, 660, 741, 872, 906, 1067, 1110, 1926
SsiI CCGC 6 cut(s) 644, 1190, 1849, 1950, 1953, 2067
SspI AATATT 1 cut(s) 1815
SspMI CTAG 3 cut(s) 1287, 1463, 1859
StyD4I CCNGG 3 cut(s) 261, 1140, 2060
StyI CCWWGG 1 cut(s) 1858
TaaI ACNGT 4 cut(s) 619, 1265, 1426, 1746
TaiI ACGT 3 cut(s) 126, 585, 917
TaqI TCGA 5 cut(s) 417, 1185, 1293, 1484, 1682
TaqII GACCGA 1 cut(s) 857
TasI AATT 9 cut(s) 65, 115, 660, 741, 872, 906, 1067, 1110, 1926
TauI GCSGC 2 cut(s) 1952, 1955
TfiI GAWTC 6 cut(s) 85, 289, 408, 850, 1298, 1643
Tru1I TTAA 3 cut(s) 441, 834, 1866
Tru9I TTAA 3 cut(s) 441, 834, 1866
TscAI CASTG 3 cut(s) 757, 1159, 1431
TseFI GTSAC 2 cut(s) 54, 712
TseI GCWGC 4 cut(s) 1054, 1149, 1326, 1376
Tsp45I GTSAC 2 cut(s) 54, 712
TspDTI ATGAA 6 cut(s) 78, 137, 189, 1728, 1938, 2054
TspRI CASTG 3 cut(s) 757, 1159, 1431
Van91I CCANNNNNTGG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 5 cut(s) 244, 878, 1061, 1318, 2058
XapI RAATTY 5 cut(s) 65, 115, 660, 1067, 1926
XceI RCATGY 2 cut(s) 601, 1834
XmaJI CCTAGG 1 cut(s) 1858
XmnI GAANNNNTTC 1 cut(s) 1409
XspI CTAG 3 cut(s) 1287, 1463, 1859
Zsp2I ATGCAT 1 cut(s) 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.