Rorug06G0060400

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000030
Physical Location & Seq
Reverse (-)
8118613 .. 8121139
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0060400.1

Sequence Viewer

Length: 1761 bp
ATGGCAAGAGAAACTAGGTCTTCGAAGAGAGTTGGGCAGAACCCCAGTAGTGAACATCATAAAGCTGATGAGATTGTGTTCTGGAAACCAAAAGACTTCCAAATCCAACGGGTGAGGAATAGTTTTGTGAATTCGAACCGAGTTTCCGTCCATGCAATTCCCGAAGGGGCTAATATTTTCACCGGCAAAAATATTCCTGAAAATGCCCTCGTGGTCTCTTCTCACCATCTTAGGTTCTTGAAATTTCCTCTTCATCCTATATTCCAAATCTTGTGGCGTGTTACTGGTTTGCATCCTATGCAATTCAATCCCATTTCATACATGCTGCTCTGCGGGTTATTAGTGATGGGCATGAAGTGGGAAGTATCATTGGGCCTAGGCGACTTCTTTTATTTTCATAGATGCGGCCGTATTTTCGAAAAGGCTCTGTTTTTCCACTTTTCTCCTCGTCCACAAAGGAAAGTCTTTGAAGAAAAGATGGGTAACGTCACCGGGTGGAAAAATGAGCCGCTAATGGTTCTTGGCGAGTGGGCAGCGCCAGAGCTTTCCATGGACGTTCCTAAAGTCTTCTCTAAGGAGATCGAATATAAGCCTTGTTCTATGGATTCCATTTTGGATGAGTCTCGTATGACGTGGTTGAAAGAACACGTATTGCGTCGGGGCTGGAACGCGGCTCAGTTTTGCTCCAGTGCTGACCTAGAGGACATTTCTAATTGTCGATCAGGACCAATCTATTGTTCGTGTCTGCAATTGTTGGAGCCTAATCTCCGAGGAGAAAGGCTGTTCAATCGTGTCGTCGAGTTAGAAAGCAATTTTCTGACTTCTGAACGCACTCCCACTTTATTTGCAGAGAGTCTCAACGTTGGAGATTCCTTTGAAGAGCCGGAAAATCTTGAAGAGGACGACATGGACATCAATCGCATAAAAGTTCCTAATCCACAAGGGAAAAAGTCCAAGAAACAGAAGTTGTCTCAAGCCGAAAGTGAGATTACCCATAGAAGCGAAAGAGGACTTGAGCTGCCTCATACGCCTCAGATTCAGCCGTCGCCATGCAAATCTTCTCCTGGTTCCCTGGTGGCCTCTTCGTCCAACACTACTTTTCAAGGTTCTGGGAACATGTCACTACCACCCCTGAAGGCTCCATTGCAGTTAACATTTAGAAAGGAAGATGACTCTTATGTGTTGGAGGGAGATCCCATTGCTTTCGATAAAGAAGCATGCTTGGCAGTGGCACAGGCCTTGGCTCTGAACCCCGTTGATCACGAAAGGCTTATGGGATTGAGCCAGCGAGATCTTGCAGCGCAGGTGGCCCTTAGCCTGCAATCGGCCTCATCAATGACTCAACATCTCTTGATGCGGACGGAAGCTGCTGAGGATAGGTTGTGGAGCCTCATACATAAGGCTAAGCAAGAGACTCAGAAGGCTGCGGACGAGCTGAAGGCGTTGCGCGAGGTTGTTGCAAAGAAATCCAAAGAAGTTGAGGACAGGAATAAGAAGATTGATGAGTTGAATGCTAAATTGTCAAAGGAGACTGCAAACAGGGCGAAAGAGTTTGAGTTGAACCAGAGTCAAGTTACTAAATGTTCTTGCAAAAGCTTCCGACTAGGATGGGTCCAAGGTCAGCAAAAAGAGGAAGACAGAATTTTTGAAGGGCCTGATGCATTCGATGAGGAAATGGGGTTGAAGTCTTCTGACTATGAGTGGATACATGGGATGAGACCTGAGGACAAACCTTCTTCGGATGATGCTAATGAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

586

Amino Acids

66.6

Weight (kDa)

6.12

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1294
Acc36I ACCTGC 1 cut(s) 1294
AccII CGCG 2 cut(s) 671, 1449
AciI CCGC 6 cut(s) 333, 405, 509, 671, 1357, 1427
AclI AACGTT 1 cut(s) 861
AclWI GGATC 1 cut(s) 1187
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 3 cut(s) 130, 242, 1641
AcuI CTGAAG 2 cut(s) 1154, 1457
AdeI CACNNNGTG 1 cut(s) 495
AfiI CCNNNNNNNGG 1 cut(s) 1324
AflIII ACRYGT 2 cut(s) 646, 1116
AjiI CACGTC 1 cut(s) 633
AjnI CCWGG 2 cut(s) 1063, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 721, 753
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 6 cut(s) 65, 544, 1018, 1367, 1435, 1596
AluI AGCT 6 cut(s) 65, 544, 1018, 1367, 1435, 1596
Alw26I GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
AlwI GGATC 1 cut(s) 1187
AoxI GGCC 7 cut(s) 373, 406, 1077, 1236, 1308, 1326, 1652
ApeKI GCWGC 6 cut(s) 325, 533, 1018, 1298, 1367, 1424
ApoI RAATTY 3 cut(s) 130, 242, 1641
ArsI GACNNNNNNTTYG 2 cut(s) 1628, 1660
AspA2I CCTAGG 1 cut(s) 376
AspLEI GCGC 3 cut(s) 538, 1303, 1449
AspS9I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 4 cut(s) 124, 172, 215, 481
AsuII TTCGAA 3 cut(s) 23, 134, 417
AvaII GGWCC 2 cut(s) 725, 1612
AvrII CCTAGG 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 1722
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 4 cut(s) 12, 559, 1641, 1680
BbvCI CCTCAGC 1 cut(s) 1371
BbvI GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
BccI CCATC 4 cut(s) 234, 340, 472, 1602
BceAI ACGGC 2 cut(s) 393, 1027
BcgI CGANNNNNNTGC 2 cut(s) 1439, 1473
BciT130I CCWGG 2 cut(s) 1065, 1073
BciVI GTATCC 1 cut(s) 1698
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
BfaI CTAG 4 cut(s) 15, 377, 698, 1604
BfoI RGCGCY 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 1294
BfuI GTATCC 1 cut(s) 1698
BglII AGATCT 1 cut(s) 1291
BisI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
BlnI CCTAGG 1 cut(s) 376
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 9 cut(s) 327, 407, 510, 535, 673, 1020, 1300, 1369, 1426
Bme1390I CCNGG 3 cut(s) 493, 1065, 1073
Bme18I GGWCC 2 cut(s) 725, 1612
BmgBI CACGTC 1 cut(s) 633
BmgT120I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
BmiI GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
BmrFI CCNGG 3 cut(s) 493, 1065, 1073
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 5 cut(s) 301, 392, 1344, 1648, 1735
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 4 cut(s) 12, 559, 1641, 1680
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 2 cut(s) 1313, 1371
Bpu1102I GCTNAGC 1 cut(s) 1404
Bpu14I TTCGAA 3 cut(s) 23, 134, 417
BpuEI CTTGAG 2 cut(s) 957, 1034
BpuMI CCSGG 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 649
BsaI GGTCTC 2 cut(s) 220, 1711
BsaJI CCNNGG 6 cut(s) 376, 549, 769, 1071, 1239, 1615
Bsc4I CCNNNNNNNGG 1 cut(s) 1324
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 3 cut(s) 45, 289, 687
Bse21I CCTNAGG 1 cut(s) 1722
Bse3DI GCAATG 2 cut(s) 1142, 1197
BseBI CCWGG 2 cut(s) 1065, 1073
BseDI CCNNGG 6 cut(s) 376, 549, 769, 1071, 1239, 1615
BseGI GGATG 6 cut(s) 253, 292, 622, 1613, 1719, 1747
BseLI CCNNNNNNNGG 1 cut(s) 1324
BseMI GCAATG 2 cut(s) 1142, 1197
BseMII CTCAG 5 cut(s) 689, 1046, 1362, 1430, 1713
BseNI ACTGG 3 cut(s) 45, 289, 687
BseRI GAGGAG 2 cut(s) 435, 786
BseX3I CGGCCG 1 cut(s) 406
BseXI GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
Bsh1236I CGCG 2 cut(s) 671, 1449
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
BsiEI CGRYCG 1 cut(s) 409
BsiSI CCGG 3 cut(s) 183, 492, 884
BslI CCNNNNNNNGG 1 cut(s) 1324
BsmAI GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
BsmI GAATGC 2 cut(s) 1516, 1661
BsnI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
Bso31I GGTCTC 2 cut(s) 220, 1711
Bsp119I TTCGAA 3 cut(s) 23, 134, 417
Bsp143I GATC 5 cut(s) 579, 719, 1192, 1258, 1291
Bsp1720I GCTNAGC 1 cut(s) 1404
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 6 cut(s) 333, 405, 509, 671, 1357, 1427
BspANI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
BspCNI CTCAG 5 cut(s) 688, 1045, 1363, 1429, 1714
BspFNI CGCG 2 cut(s) 671, 1449
BspLI GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
BspMI ACCTGC 1 cut(s) 1294
BspPI GGATC 1 cut(s) 1187
BspQI GCTCTTC 1 cut(s) 873
BspT104I TTCGAA 3 cut(s) 23, 134, 417
BspTNI GGTCTC 2 cut(s) 220, 1711
BsrDI GCAATG 2 cut(s) 1142, 1197
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 3 cut(s) 45, 289, 687
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 6 cut(s) 376, 549, 769, 1071, 1239, 1615
BssMI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 4 cut(s) 376, 549, 1239, 1615
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 2 cut(s) 1065, 1073
Bst6I CTCTTC 6 cut(s) 20, 223, 255, 873, 891, 1087
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 649
BstBI TTCGAA 3 cut(s) 23, 134, 417
BstC8I GCNNGC 3 cut(s) 1219, 1286, 1319
BstDEI CTNAG 9 cut(s) 230, 573, 675, 1032, 1313, 1371, 1404, 1416, 1722
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 6 cut(s) 253, 292, 622, 1613, 1719, 1747
BstFNI CGCG 2 cut(s) 671, 1449
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 3 cut(s) 538, 1303, 1449
BstKTI GATC 5 cut(s) 582, 722, 1195, 1261, 1294
BstMAI GTCTC 7 cut(s) 220, 627, 860, 975, 1406, 1523, 1711
BstMBI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 6 cut(s) 298, 1027, 1223, 1307, 1541, 1754
BstNI CCWGG 2 cut(s) 1065, 1073
BstNSI RCATGY 3 cut(s) 325, 1120, 1221
BstSCI CCNGG 3 cut(s) 491, 1063, 1071
BstUI CGCG 2 cut(s) 671, 1449
BstV1I GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
BstV2I GAAGAC 4 cut(s) 12, 559, 1641, 1680
BstX2I RGATCY 2 cut(s) 1192, 1291
BstYI RGATCY 2 cut(s) 1192, 1291
BstZI CGGCCG 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 1722
BsuI GTATCC 1 cut(s) 1698
BsuRI GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 633
BtsCI GGATG 6 cut(s) 253, 292, 622, 1613, 1719, 1747
BtsI GCAGTG 1 cut(s) 1233
BtsIMutI CAGTG 2 cut(s) 694, 1233
BveI ACCTGC 1 cut(s) 1294
Cac8I GCNNGC 3 cut(s) 1219, 1286, 1319
CfoI GCGC 3 cut(s) 538, 1303, 1449
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
CseI GACGC 1 cut(s) 644
CspCI CAANNNNNGTGG 4 cut(s) 254, 289, 826, 861
CviAII CATG 9 cut(s) 152, 322, 352, 550, 907, 1050, 1117, 1218, 1709
DdeI CTNAG 9 cut(s) 230, 573, 675, 1032, 1313, 1371, 1404, 1416, 1722
DpnI GATC 5 cut(s) 581, 721, 1194, 1260, 1293
DpnII GATC 5 cut(s) 579, 719, 1192, 1258, 1291
DraIII CACNNNGTG 1 cut(s) 495
EaeI YGGCCR 1 cut(s) 406
EagI CGGCCG 1 cut(s) 406
Eam1104I CTCTTC 6 cut(s) 20, 223, 255, 873, 891, 1087
EarI CTCTTC 6 cut(s) 20, 223, 255, 873, 891, 1087
EclXI CGGCCG 1 cut(s) 406
Eco130I CCWWGG 4 cut(s) 376, 549, 1239, 1615
Eco147I AGGCCT 1 cut(s) 1238
Eco31I GGTCTC 2 cut(s) 220, 1711
Eco47I GGWCC 2 cut(s) 725, 1612
Eco52I CGGCCG 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 1154, 1457
Eco81I CCTNAGG 1 cut(s) 1722
EcoO109I RGGNCCY 1 cut(s) 1652
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 1063, 1071
EcoT14I CCWWGG 4 cut(s) 376, 549, 1239, 1615
EcoT22I ATGCAT 1 cut(s) 1663
ErhI CCWWGG 4 cut(s) 376, 549, 1239, 1615
FaeI CATG 9 cut(s) 155, 325, 355, 553, 910, 1053, 1120, 1221, 1712
FatI CATG 9 cut(s) 151, 321, 351, 549, 906, 1049, 1116, 1217, 1708
FauI CCCGC 1 cut(s) 326
FbaI TGATCA 1 cut(s) 1258
Fnu4HI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
FokI GGATG 6 cut(s) 240, 279, 629, 1620, 1726, 1754
Fsp4HI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
FspBI CTAG 4 cut(s) 15, 377, 698, 1604
GlaI GCGC 3 cut(s) 537, 1302, 1448
GluI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 7 cut(s) 375, 408, 1079, 1238, 1310, 1328, 1654
HapII CCGG 3 cut(s) 183, 492, 884
HgaI GACGC 1 cut(s) 644
HhaI GCGC 3 cut(s) 538, 1303, 1449
Hin1II CATG 9 cut(s) 155, 325, 355, 553, 910, 1053, 1120, 1221, 1712
Hin6I GCGC 3 cut(s) 536, 1301, 1447
HinP1I GCGC 3 cut(s) 536, 1301, 1447
HincII GTYRAC 1 cut(s) 1152
HindII GTYRAC 1 cut(s) 1152
HindIII AAGCTT 1 cut(s) 1594
HinfI GANTC 9 cut(s) 605, 620, 853, 869, 1036, 1172, 1339, 1414, 1567
HpaI GTTAAC 1 cut(s) 1152
HpaII CCGG 3 cut(s) 183, 492, 884
HphI GGTGA 4 cut(s) 124, 172, 215, 481
Hpy166II GTNNAC 3 cut(s) 53, 452, 1152
Hpy188I TCNGA 9 cut(s) 770, 819, 826, 1035, 1248, 1419, 1601, 1693, 1741
Hpy188III TCNNGA 8 cut(s) 82, 161, 197, 238, 723, 893, 1262, 1351
Hpy8I GTNNAC 3 cut(s) 53, 452, 1152
Hpy99I CGWCG 3 cut(s) 660, 800, 1048
HpyAV CCTTC 6 cut(s) 158, 1129, 1414, 1432, 1643, 1743
HpyCH4IV ACGT 5 cut(s) 486, 555, 632, 648, 861
HpyF10VI GCNNNNNNNGC 6 cut(s) 298, 1027, 1223, 1307, 1541, 1754
HpyF3I CTNAG 9 cut(s) 230, 573, 675, 1032, 1313, 1371, 1404, 1416, 1722
HpySE526I ACGT 5 cut(s) 486, 555, 632, 648, 861
Hsp92II CATG 9 cut(s) 155, 325, 355, 553, 910, 1053, 1120, 1221, 1712
HspAI GCGC 3 cut(s) 536, 1301, 1447
Ksp22I TGATCA 1 cut(s) 1258
KspAI GTTAAC 1 cut(s) 1152
Kzo9I GATC 5 cut(s) 579, 719, 1192, 1258, 1291
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 4 cut(s) 689, 757, 1144, 1386
Lsp1109I GCAGC 6 cut(s) 312, 545, 1005, 1310, 1354, 1411
LweI GCATC 5 cut(s) 301, 392, 1344, 1648, 1735
MaeI CTAG 4 cut(s) 15, 377, 698, 1604
MaeII ACGT 5 cut(s) 486, 555, 632, 648, 861
MaeIII GTNAC 5 cut(s) 280, 482, 487, 1119, 1573
MalI GATC 5 cut(s) 581, 721, 1194, 1260, 1293
MboI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
MfeI CAATTG 1 cut(s) 749
MflI RGATCY 2 cut(s) 1192, 1291
MluCI AATT 9 cut(s) 130, 156, 242, 302, 712, 749, 811, 1517, 1641
MlyI GAGTC 6 cut(s) 629, 862, 1166, 1333, 1408, 1576
MmeI TCCRAC 6 cut(s) 130, 735, 844, 1113, 1164, 1624
Mph1103I ATGCAT 1 cut(s) 1663
MseI TTAA 1 cut(s) 1151
MspI CCGG 3 cut(s) 183, 492, 884
MspR9I CCNGG 3 cut(s) 493, 1065, 1073
MunI CAATTG 1 cut(s) 749
Mva1269I GAATGC 2 cut(s) 1516, 1661
MvaI CCWGG 2 cut(s) 1065, 1073
MvnI CGCG 2 cut(s) 671, 1449
MwoI GCNNNNNNNGC 6 cut(s) 298, 1027, 1223, 1307, 1541, 1754
NciI CCSGG 1 cut(s) 493
NcoI CCATGG 1 cut(s) 549
NdeII GATC 5 cut(s) 579, 719, 1192, 1258, 1291
NlaIII CATG 9 cut(s) 155, 325, 355, 553, 910, 1053, 1120, 1221, 1712
NlaIV GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
NmuCI GTSAC 2 cut(s) 487, 1119
NsiI ATGCAT 1 cut(s) 1663
NspI RCATGY 3 cut(s) 325, 1120, 1221
NspV TTCGAA 3 cut(s) 23, 134, 417
PaeI GCATGC 1 cut(s) 1221
PaqCI CACCTGC 1 cut(s) 1294
PceI AGGCCT 1 cut(s) 1238
PciI ACATGT 1 cut(s) 1116
PciSI GCTCTTC 1 cut(s) 873
PctI GAATGC 2 cut(s) 1516, 1661
PfeI GAWTC 3 cut(s) 605, 869, 1036
PkrI GCNGC 9 cut(s) 327, 407, 510, 535, 673, 1020, 1300, 1369, 1426
PleI GAGTC 6 cut(s) 628, 861, 1166, 1333, 1408, 1575
PpsI GAGTC 6 cut(s) 628, 861, 1166, 1333, 1408, 1575
Ppu21I YACGTR 1 cut(s) 649
PscI ACATGT 1 cut(s) 1116
Psp1406I AACGTT 1 cut(s) 861
Psp6I CCWGG 2 cut(s) 1063, 1071
PspGI CCWGG 2 cut(s) 1063, 1071
PspN4I GGNNCC 5 cut(s) 759, 1069, 1140, 1388, 1613
PspPI GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
PsuI RGATCY 2 cut(s) 1192, 1291
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 1 cut(s) 1151
SatI GCNGC 9 cut(s) 326, 406, 509, 534, 672, 1019, 1299, 1368, 1425
Sau3AI GATC 5 cut(s) 579, 719, 1192, 1258, 1291
Sau96I GGNCC 5 cut(s) 373, 725, 1309, 1612, 1652
SchI GAGTC 6 cut(s) 629, 862, 1166, 1333, 1408, 1576
ScrFI CCNGG 3 cut(s) 493, 1065, 1073
SfaNI GCATC 5 cut(s) 301, 392, 1344, 1648, 1735
SfuI TTCGAA 3 cut(s) 23, 134, 417
SinI GGWCC 2 cut(s) 725, 1612
SmlI CTYRAG 2 cut(s) 972, 1013
SmoI CTYRAG 2 cut(s) 972, 1013
SphI GCATGC 1 cut(s) 1221
Sse9I AATT 9 cut(s) 130, 156, 242, 302, 712, 749, 811, 1517, 1641
SseBI AGGCCT 1 cut(s) 1238
SsiI CCGC 6 cut(s) 333, 405, 509, 671, 1357, 1427
SspI AATATT 2 cut(s) 175, 193
SspMI CTAG 4 cut(s) 15, 377, 698, 1604
StuI AGGCCT 1 cut(s) 1238
StyD4I CCNGG 3 cut(s) 491, 1063, 1071
StyI CCWWGG 4 cut(s) 376, 549, 1239, 1615
TaiI ACGT 5 cut(s) 489, 558, 635, 651, 864
TaqI TCGA 8 cut(s) 23, 134, 417, 582, 718, 798, 1206, 1665
TasI AATT 9 cut(s) 130, 156, 242, 302, 712, 749, 811, 1517, 1641
TauI GCSGC 3 cut(s) 408, 511, 674
TfiI GAWTC 3 cut(s) 605, 869, 1036
Tru1I TTAA 1 cut(s) 1151
Tru9I TTAA 1 cut(s) 1151
TscAI CASTG 2 cut(s) 694, 1233
TseFI GTSAC 2 cut(s) 487, 1119
TseI GCWGC 6 cut(s) 325, 533, 1018, 1298, 1367, 1424
Tsp45I GTSAC 2 cut(s) 487, 1119
TspDTI ATGAA 4 cut(s) 242, 306, 368, 386
TspGWI ACGGA 2 cut(s) 136, 1376
TspRI CASTG 2 cut(s) 694, 1233
VpaK11BI GGWCC 2 cut(s) 725, 1612
XapI RAATTY 3 cut(s) 130, 242, 1641
XceI RCATGY 3 cut(s) 325, 1120, 1221
XmaJI CCTAGG 1 cut(s) 376
XspI CTAG 4 cut(s) 15, 377, 698, 1604
Zsp2I ATGCAT 1 cut(s) 1663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.