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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 286 |
| AccBSI | CCGCTC | 2 cut(s) | 6, 393 |
| AccII | CGCG | 1 cut(s) | 375 |
| AciI | CCGC | 3 cut(s) | 6, 393, 891 |
| AclWI | GGATC | 2 cut(s) | 86, 1282 |
| AcsI | RAATTY | 2 cut(s) | 330, 1032 |
| AcvI | CACGTG | 1 cut(s) | 991 |
| AdeI | CACNNNGTG | 2 cut(s) | 104, 685 |
| AfaI | GTAC | 3 cut(s) | 649, 756, 1160 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 286, 840 |
| AflIII | ACRYGT | 2 cut(s) | 988, 990 |
| AgsI | TTSAA | 5 cut(s) | 172, 499, 1010, 1050, 1103 |
| AjnI | CCWGG | 1 cut(s) | 592 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 707, 739, 1116, 1148 |
| AluBI | AGCT | 4 cut(s) | 404, 448, 549, 1150 |
| AluI | AGCT | 4 cut(s) | 404, 448, 549, 1150 |
| Alw21I | GWGCWC | 3 cut(s) | 187, 257, 874 |
| Alw44I | GTGCAC | 2 cut(s) | 253, 870 |
| AlwI | GGATC | 2 cut(s) | 86, 1282 |
| AoxI | GGCC | 4 cut(s) | 233, 590, 999, 1068 |
| ApaLI | GTGCAC | 2 cut(s) | 253, 870 |
| ApeKI | GCWGC | 4 cut(s) | 153, 318, 638, 1304 |
| ApoI | RAATTY | 2 cut(s) | 330, 1032 |
| AspLEI | GCGC | 1 cut(s) | 375 |
| AspS9I | GGNCC | 2 cut(s) | 233, 831 |
| AsuC2I | CCSGG | 1 cut(s) | 269 |
| AsuHPI | GGTGA | 5 cut(s) | 101, 397, 479, 806, 1096 |
| AvaII | GGWCC | 1 cut(s) | 831 |
| BaeGI | GKGCMC | 2 cut(s) | 257, 874 |
| BauI | CACGAG | 1 cut(s) | 965 |
| BbrPI | CACGTG | 1 cut(s) | 991 |
| BbsI | GAAGAC | 2 cut(s) | 123, 1038 |
| Bbv12I | GWGCWC | 3 cut(s) | 187, 257, 874 |
| BbvI | GCAGC | 4 cut(s) | 140, 305, 650, 1316 |
| BccI | CCATC | 7 cut(s) | 212, 373, 410, 414, 683, 1048, 1199 |
| BceAI | ACGGC | 1 cut(s) | 904 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 733, 767 |
| BciT130I | CCWGG | 1 cut(s) | 594 |
| BcnI | CCSGG | 1 cut(s) | 269 |
| BfaI | CTAG | 3 cut(s) | 413, 512, 683 |
| BfmI | CTRYAG | 2 cut(s) | 405, 636 |
| BglII | AGATCT | 1 cut(s) | 341 |
| BisI | GCNGC | 4 cut(s) | 154, 319, 639, 1305 |
| BlsI | GCNGC | 4 cut(s) | 155, 320, 640, 1306 |
| Bme1390I | CCNGG | 2 cut(s) | 269, 594 |
| Bme18I | GGWCC | 1 cut(s) | 831 |
| BmgT120I | GGNCC | 2 cut(s) | 233, 831 |
| BmrFI | CCNGG | 2 cut(s) | 269, 594 |
| BpiI | GAAGAC | 2 cut(s) | 123, 1038 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BpuMI | CCSGG | 1 cut(s) | 269 |
| BsaAI | YACGTR | 1 cut(s) | 991 |
| BsaBI | GATNNNNATC | 1 cut(s) | 485 |
| BsaJI | CCNNGG | 3 cut(s) | 795, 886, 1235 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 286, 840 |
| Bse8I | GATNNNNATC | 1 cut(s) | 485 |
| BseBI | CCWGG | 1 cut(s) | 594 |
| BseDI | CCNNGG | 3 cut(s) | 795, 886, 1235 |
| BseGI | GGATG | 4 cut(s) | 223, 425, 694, 1064 |
| BseJI | GATNNNNATC | 1 cut(s) | 485 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 286, 840 |
| BseMII | CTCAG | 1 cut(s) | 200 |
| BseRI | GAGGAG | 2 cut(s) | 95, 403 |
| BseSI | GKGCMC | 2 cut(s) | 257, 874 |
| BseXI | GCAGC | 4 cut(s) | 140, 305, 650, 1316 |
| Bsh1236I | CGCG | 1 cut(s) | 375 |
| BshFI | GGCC | 4 cut(s) | 235, 592, 1001, 1070 |
| BsiHKAI | GWGCWC | 3 cut(s) | 187, 257, 874 |
| BsiSI | CCGG | 1 cut(s) | 268 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 286, 840 |
| BsnI | GGCC | 4 cut(s) | 235, 592, 1001, 1070 |
| Bsp1286I | GDGCHC | 3 cut(s) | 187, 257, 874 |
| Bsp143I | GATC | 3 cut(s) | 91, 341, 1274 |
| Bsp19I | CCATGG | 1 cut(s) | 795 |
| BspACI | CCGC | 3 cut(s) | 6, 393, 891 |
| BspANI | GGCC | 4 cut(s) | 235, 592, 1001, 1070 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspFNI | CGCG | 1 cut(s) | 375 |
| BspMAI | CTGCAG | 1 cut(s) | 640 |
| BspPI | GGATC | 2 cut(s) | 86, 1282 |
| BsrBI | CCGCTC | 2 cut(s) | 6, 393 |
| BssECI | CCNNGG | 3 cut(s) | 795, 886, 1235 |
| BssMI | GATC | 3 cut(s) | 91, 341, 1274 |
| BssSI | CACGAG | 1 cut(s) | 965 |
| BssT1I | CCWWGG | 1 cut(s) | 795 |
| Bst2BI | CACGAG | 1 cut(s) | 965 |
| Bst2UI | CCWGG | 1 cut(s) | 594 |
| Bst4CI | ACNGT | 3 cut(s) | 129, 1236, 1254 |
| BstBAI | YACGTR | 1 cut(s) | 991 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstDSI | CCRYGG | 3 cut(s) | 795, 886, 1235 |
| BstF5I | GGATG | 4 cut(s) | 223, 425, 694, 1064 |
| BstFNI | CGCG | 1 cut(s) | 375 |
| BstHHI | GCGC | 1 cut(s) | 375 |
| BstKTI | GATC | 3 cut(s) | 94, 344, 1277 |
| BstMBI | GATC | 3 cut(s) | 91, 341, 1274 |
| BstNI | CCWGG | 1 cut(s) | 594 |
| BstNSI | RCATGY | 1 cut(s) | 748 |
| BstSCI | CCNGG | 2 cut(s) | 267, 592 |
| BstSFI | CTRYAG | 2 cut(s) | 405, 636 |
| BstSLI | GKGCMC | 2 cut(s) | 257, 874 |
| BstUI | CGCG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 4 cut(s) | 140, 305, 650, 1316 |
| BstV2I | GAAGAC | 2 cut(s) | 123, 1038 |
| BstX2I | RGATCY | 1 cut(s) | 341 |
| BstYI | RGATCY | 1 cut(s) | 341 |
| BsuRI | GGCC | 4 cut(s) | 235, 592, 1001, 1070 |
| BtgI | CCRYGG | 3 cut(s) | 795, 886, 1235 |
| BtsCI | GGATG | 4 cut(s) | 223, 425, 694, 1064 |
| BtsI | GCAGTG | 2 cut(s) | 219, 633 |
| BtsIMutI | CAGTG | 4 cut(s) | 125, 219, 633, 1250 |
| CfoI | GCGC | 1 cut(s) | 375 |
| Cfr13I | GGNCC | 2 cut(s) | 233, 831 |
| CseI | GACGC | 1 cut(s) | 780 |
| Csp6I | GTAC | 3 cut(s) | 648, 755, 1159 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 875, 910 |
| CviAII | CATG | 6 cut(s) | 733, 745, 796, 828, 853, 1278 |
| CviQI | GTAC | 3 cut(s) | 648, 755, 1159 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 3 cut(s) | 93, 343, 1276 |
| DpnII | GATC | 3 cut(s) | 91, 341, 1274 |
| DraIII | CACNNNGTG | 2 cut(s) | 104, 685 |
| Eco130I | CCWWGG | 1 cut(s) | 795 |
| Eco147I | AGGCCT | 2 cut(s) | 592, 1001 |
| Eco32I | GATATC | 2 cut(s) | 535, 1228 |
| Eco47I | GGWCC | 1 cut(s) | 831 |
| Eco72I | CACGTG | 1 cut(s) | 991 |
| EcoRII | CCWGG | 1 cut(s) | 592 |
| EcoRV | GATATC | 2 cut(s) | 535, 1228 |
| EcoT14I | CCWWGG | 1 cut(s) | 795 |
| ErhI | CCWWGG | 1 cut(s) | 795 |
| FaeI | CATG | 6 cut(s) | 736, 748, 799, 831, 856, 1281 |
| FatI | CATG | 6 cut(s) | 732, 744, 795, 827, 852, 1277 |
| FauNDI | CATATG | 1 cut(s) | 1294 |
| Fnu4HI | GCNGC | 4 cut(s) | 154, 319, 639, 1305 |
| FokI | GGATG | 4 cut(s) | 230, 432, 701, 1071 |
| Fsp4HI | GCNGC | 4 cut(s) | 154, 319, 639, 1305 |
| FspBI | CTAG | 3 cut(s) | 413, 512, 683 |
| GlaI | GCGC | 1 cut(s) | 374 |
| GluI | GCNGC | 4 cut(s) | 154, 319, 639, 1305 |
| HaeIII | GGCC | 4 cut(s) | 235, 592, 1001, 1070 |
| HapII | CCGG | 1 cut(s) | 268 |
| HgaI | GACGC | 1 cut(s) | 780 |
| HhaI | GCGC | 1 cut(s) | 375 |
| Hin1II | CATG | 6 cut(s) | 736, 748, 799, 831, 856, 1281 |
| Hin6I | GCGC | 1 cut(s) | 373 |
| HinP1I | GCGC | 1 cut(s) | 373 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HindIII | AAGCTT | 1 cut(s) | 547 |
| HinfI | GANTC | 1 cut(s) | 937 |
| HpaII | CCGG | 1 cut(s) | 268 |
| HphI | GGTGA | 5 cut(s) | 101, 397, 479, 806, 1096 |
| Hpy166II | GTNNAC | 5 cut(s) | 255, 292, 814, 872, 1250 |
| Hpy188I | TCNGA | 3 cut(s) | 427, 714, 849 |
| Hpy188III | TCNNGA | 2 cut(s) | 356, 941 |
| Hpy8I | GTNNAC | 5 cut(s) | 255, 292, 814, 872, 1250 |
| Hpy99I | CGWCG | 2 cut(s) | 589, 1202 |
| HpyAV | CCTTC | 7 cut(s) | 27, 65, 79, 107, 308, 991, 1280 |
| HpyCH4III | ACNGT | 3 cut(s) | 129, 1236, 1254 |
| HpyCH4IV | ACGT | 2 cut(s) | 990, 1246 |
| HpyCH4V | TGCA | 9 cut(s) | 55, 110, 156, 255, 638, 744, 827, 872, 1024 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| HpySE526I | ACGT | 2 cut(s) | 990, 1246 |
| Hsp92II | CATG | 6 cut(s) | 736, 748, 799, 831, 856, 1281 |
| HspAI | GCGC | 1 cut(s) | 373 |
| Kzo9I | GATC | 3 cut(s) | 91, 341, 1274 |
| LmnI | GCTCC | 3 cut(s) | 390, 849, 1289 |
| Lsp1109I | GCAGC | 4 cut(s) | 140, 305, 650, 1316 |
| MaeI | CTAG | 3 cut(s) | 413, 512, 683 |
| MaeII | ACGT | 2 cut(s) | 990, 1246 |
| MaeIII | GTNAC | 4 cut(s) | 362, 490, 629, 728 |
| MalI | GATC | 3 cut(s) | 93, 343, 1276 |
| MbiI | CCGCTC | 2 cut(s) | 6, 393 |
| MboI | GATC | 3 cut(s) | 91, 341, 1274 |
| MboII | GAAGA | 6 cut(s) | 123, 256, 511, 514, 1038, 1102 |
| MflI | RGATCY | 1 cut(s) | 341 |
| MhlI | GDGCHC | 3 cut(s) | 187, 257, 874 |
| MmeI | TCCRAC | 2 cut(s) | 405, 827 |
| MseI | TTAA | 3 cut(s) | 143, 239, 435 |
| MspI | CCGG | 1 cut(s) | 268 |
| MspR9I | CCNGG | 2 cut(s) | 269, 594 |
| MvaI | CCWGG | 1 cut(s) | 594 |
| MvnI | CGCG | 1 cut(s) | 375 |
| NciI | CCSGG | 1 cut(s) | 269 |
| NcoI | CCATGG | 1 cut(s) | 795 |
| NdeI | CATATG | 1 cut(s) | 1294 |
| NdeII | GATC | 3 cut(s) | 91, 341, 1274 |
| NlaIII | CATG | 6 cut(s) | 736, 748, 799, 831, 856, 1281 |
| NmuCI | GTSAC | 2 cut(s) | 362, 629 |
| NspI | RCATGY | 1 cut(s) | 748 |
| PceI | AGGCCT | 2 cut(s) | 592, 1001 |
| PfeI | GAWTC | 1 cut(s) | 937 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 286 |
| PkrI | GCNGC | 4 cut(s) | 155, 320, 640, 1306 |
| PmaCI | CACGTG | 1 cut(s) | 991 |
| PmlI | CACGTG | 1 cut(s) | 991 |
| Ppu21I | YACGTR | 1 cut(s) | 991 |
| Psp6I | CCWGG | 1 cut(s) | 592 |
| PspCI | CACGTG | 1 cut(s) | 991 |
| PspGI | CCWGG | 1 cut(s) | 592 |
| PspPI | GGNCC | 2 cut(s) | 233, 831 |
| PstI | CTGCAG | 1 cut(s) | 640 |
| PsuI | RGATCY | 1 cut(s) | 341 |
| RsaI | GTAC | 3 cut(s) | 649, 756, 1160 |
| RsaNI | GTAC | 3 cut(s) | 648, 755, 1159 |
| SaqAI | TTAA | 3 cut(s) | 143, 239, 435 |
| SatI | GCNGC | 4 cut(s) | 154, 319, 639, 1305 |
| Sau3AI | GATC | 3 cut(s) | 91, 341, 1274 |
| Sau96I | GGNCC | 2 cut(s) | 233, 831 |
| ScrFI | CCNGG | 2 cut(s) | 269, 594 |
| SduI | GDGCHC | 3 cut(s) | 187, 257, 874 |
| SfcI | CTRYAG | 2 cut(s) | 405, 636 |
| SinI | GGWCC | 1 cut(s) | 831 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| SseBI | AGGCCT | 2 cut(s) | 592, 1001 |
| SsiI | CCGC | 3 cut(s) | 6, 393, 891 |
| SspI | AATATT | 1 cut(s) | 1098 |
| SspMI | CTAG | 3 cut(s) | 413, 512, 683 |
| StuI | AGGCCT | 2 cut(s) | 592, 1001 |
| StyD4I | CCNGG | 2 cut(s) | 267, 592 |
| StyI | CCWWGG | 1 cut(s) | 795 |
| TaaI | ACNGT | 3 cut(s) | 129, 1236, 1254 |
| TaiI | ACGT | 2 cut(s) | 993, 1249 |
| TaqI | TCGA | 4 cut(s) | 676, 803, 995, 1230 |
| TfiI | GAWTC | 1 cut(s) | 937 |
| Tru1I | TTAA | 3 cut(s) | 143, 239, 435 |
| Tru9I | TTAA | 3 cut(s) | 143, 239, 435 |
| TscAI | CASTG | 4 cut(s) | 132, 219, 640, 1257 |
| TseFI | GTSAC | 2 cut(s) | 362, 629 |
| TseI | GCWGC | 4 cut(s) | 153, 318, 638, 1304 |
| Tsp45I | GTSAC | 2 cut(s) | 362, 629 |
| TspDTI | ATGAA | 6 cut(s) | 84, 1044, 1142, 1142, 1181, 1314 |
| TspGWI | ACGGA | 1 cut(s) | 1284 |
| TspRI | CASTG | 4 cut(s) | 132, 219, 640, 1257 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 286 |
| VneI | GTGCAC | 2 cut(s) | 253, 870 |
| VpaK11BI | GGWCC | 1 cut(s) | 831 |
| XapI | RAATTY | 2 cut(s) | 330, 1032 |
| XceI | RCATGY | 1 cut(s) | 748 |
| XspI | CTAG | 3 cut(s) | 413, 512, 683 |