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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 151 |
| AccII | CGCG | 1 cut(s) | 437 |
| AciI | CCGC | 1 cut(s) | 435 |
| AclWI | GGATC | 2 cut(s) | 241, 254 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AcsI | RAATTY | 2 cut(s) | 53, 416 |
| AfaI | GTAC | 1 cut(s) | 291 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 19, 34 |
| AflIII | ACRYGT | 1 cut(s) | 292 |
| AgsI | TTSAA | 1 cut(s) | 421 |
| AjiI | CACGTC | 1 cut(s) | 353 |
| AluBI | AGCT | 2 cut(s) | 91, 317 |
| AluI | AGCT | 2 cut(s) | 91, 317 |
| AlwI | GGATC | 2 cut(s) | 241, 254 |
| Ama87I | CYCGRG | 1 cut(s) | 28 |
| AoxI | GGCC | 4 cut(s) | 25, 113, 220, 424 |
| ApaI | GGGCCC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 3 cut(s) | 201, 308, 356 |
| ApoI | RAATTY | 2 cut(s) | 53, 416 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 4 cut(s) | 25, 26, 113, 424 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 28 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BamHI | GGATCC | 1 cut(s) | 246 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BbvI | GCAGC | 3 cut(s) | 188, 320, 368 |
| BccI | CCATC | 1 cut(s) | 164 |
| BceAI | ACGGC | 1 cut(s) | 411 |
| BfaI | CTAG | 2 cut(s) | 92, 347 |
| BisI | GCNGC | 3 cut(s) | 202, 309, 357 |
| BlsI | GCNGC | 3 cut(s) | 203, 310, 358 |
| BmeT110I | CYCGRG | 1 cut(s) | 28 |
| BmgBI | CACGTC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 4 cut(s) | 25, 26, 113, 424 |
| BmiI | GGNNCC | 3 cut(s) | 27, 232, 248 |
| BmsI | GCATC | 1 cut(s) | 325 |
| Bpu10I | CCTNAGC | 1 cut(s) | 318 |
| BsaAI | YACGTR | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 1 cut(s) | 186 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 19, 34 |
| Bse1I | ACTGG | 1 cut(s) | 402 |
| BseDI | CCNNGG | 1 cut(s) | 186 |
| BseGI | GGATG | 3 cut(s) | 55, 175, 375 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 19, 34 |
| BseMII | CTCAG | 1 cut(s) | 332 |
| BseNI | ACTGG | 1 cut(s) | 402 |
| BseRI | GAGGAG | 1 cut(s) | 35 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BseXI | GCAGC | 3 cut(s) | 188, 320, 368 |
| BsgI | GTGCAG | 1 cut(s) | 375 |
| Bsh1236I | CGCG | 1 cut(s) | 437 |
| BshFI | GGCC | 4 cut(s) | 27, 115, 222, 426 |
| BsiHKCI | CYCGRG | 1 cut(s) | 28 |
| BsiSI | CCGG | 1 cut(s) | 250 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 19, 34 |
| BsnI | GGCC | 4 cut(s) | 27, 115, 222, 426 |
| BsoBI | CYCGRG | 1 cut(s) | 28 |
| Bsp120I | GGGCCC | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 1 cut(s) | 29 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 1 cut(s) | 435 |
| BspANI | GGCC | 4 cut(s) | 27, 115, 222, 426 |
| BspCNI | CTCAG | 1 cut(s) | 331 |
| BspFNI | CGCG | 1 cut(s) | 437 |
| BspLI | GGNNCC | 3 cut(s) | 27, 232, 248 |
| BspPI | GGATC | 2 cut(s) | 241, 254 |
| BsrI | ACTGG | 1 cut(s) | 402 |
| BssECI | CCNNGG | 1 cut(s) | 186 |
| BssMI | GATC | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 1 cut(s) | 106 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 158 |
| BstBAI | YACGTR | 1 cut(s) | 293 |
| BstC8I | GCNNGC | 2 cut(s) | 239, 255 |
| BstDEI | CTNAG | 1 cut(s) | 318 |
| BstDSI | CCRYGG | 1 cut(s) | 186 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 17 |
| BstF5I | GGATG | 3 cut(s) | 55, 175, 375 |
| BstFNI | CGCG | 1 cut(s) | 437 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 97, 158, 314 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstUI | CGCG | 1 cut(s) | 437 |
| BstV1I | GCAGC | 3 cut(s) | 188, 320, 368 |
| BstX2I | RGATCY | 1 cut(s) | 246 |
| BstYI | RGATCY | 1 cut(s) | 246 |
| BsuRI | GGCC | 4 cut(s) | 27, 115, 222, 426 |
| BtgI | CCRYGG | 1 cut(s) | 186 |
| BtrI | CACGTC | 1 cut(s) | 353 |
| BtsCI | GGATG | 3 cut(s) | 55, 175, 375 |
| BtsIMutI | CAGTG | 1 cut(s) | 395 |
| Cac8I | GCNNGC | 2 cut(s) | 239, 255 |
| CfoI | GCGC | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 4 cut(s) | 25, 26, 113, 424 |
| Csp6I | GTAC | 1 cut(s) | 290 |
| CviJI | RGCY | 7 cut(s) | 27, 91, 115, 222, 253, 317, 426 |
| CviKI_1 | RGCY | 7 cut(s) | 27, 91, 115, 222, 253, 317, 426 |
| CviQI | GTAC | 1 cut(s) | 290 |
| DdeI | CTNAG | 1 cut(s) | 318 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco32I | GATATC | 1 cut(s) | 180 |
| Eco88I | CYCGRG | 1 cut(s) | 28 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 17 |
| EcoO109I | RGGNCCY | 1 cut(s) | 25 |
| EcoRV | GATATC | 1 cut(s) | 180 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| Fnu4HI | GCNGC | 3 cut(s) | 202, 309, 357 |
| FokI | GGATG | 3 cut(s) | 62, 182, 362 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 3 cut(s) | 202, 309, 357 |
| FspBI | CTAG | 2 cut(s) | 92, 347 |
| FspI | TGCGCA | 1 cut(s) | 151 |
| GlaI | GCGC | 1 cut(s) | 151 |
| GluI | GCNGC | 3 cut(s) | 202, 309, 357 |
| HaeIII | GGCC | 4 cut(s) | 27, 115, 222, 426 |
| HapII | CCGG | 1 cut(s) | 250 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HpaII | CCGG | 1 cut(s) | 250 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy188I | TCNGA | 1 cut(s) | 177 |
| Hpy188III | TCNNGA | 2 cut(s) | 320, 408 |
| Hpy99I | CGWCG | 1 cut(s) | 432 |
| HpyAV | CCTTC | 1 cut(s) | 215 |
| HpyCH4III | ACNGT | 1 cut(s) | 106 |
| HpyCH4IV | ACGT | 3 cut(s) | 136, 292, 352 |
| HpyCH4V | TGCA | 2 cut(s) | 237, 356 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 97, 158, 314 |
| HpyF3I | CTNAG | 1 cut(s) | 318 |
| HpySE526I | ACGT | 3 cut(s) | 136, 292, 352 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LpnPI | CCDG | 6 cut(s) | 247, 263, 305, 352, 383, 393 |
| Lsp1109I | GCAGC | 3 cut(s) | 188, 320, 368 |
| LweI | GCATC | 1 cut(s) | 325 |
| MaeI | CTAG | 2 cut(s) | 92, 347 |
| MaeII | ACGT | 3 cut(s) | 136, 292, 352 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 1 cut(s) | 80 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MflI | RGATCY | 1 cut(s) | 246 |
| MhlI | GDGCHC | 1 cut(s) | 29 |
| MluCI | AATT | 4 cut(s) | 53, 330, 382, 416 |
| MnlI | CCTC | 8 cut(s) | 13, 16, 28, 39, 93, 126, 237, 432 |
| MspI | CCGG | 1 cut(s) | 250 |
| MunI | CAATTG | 1 cut(s) | 330 |
| MvnI | CGCG | 1 cut(s) | 437 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 97, 158, 314 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIV | GGNNCC | 3 cut(s) | 27, 232, 248 |
| NsbI | TGCGCA | 1 cut(s) | 151 |
| PkrI | GCNGC | 3 cut(s) | 203, 310, 358 |
| Ppu21I | YACGTR | 1 cut(s) | 293 |
| PspN4I | GGNNCC | 3 cut(s) | 27, 232, 248 |
| PspOMI | GGGCCC | 1 cut(s) | 25 |
| PspPI | GGNCC | 4 cut(s) | 25, 26, 113, 424 |
| PsuI | RGATCY | 1 cut(s) | 246 |
| RsaI | GTAC | 1 cut(s) | 291 |
| RsaNI | GTAC | 1 cut(s) | 290 |
| SatI | GCNGC | 3 cut(s) | 202, 309, 357 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| Sau96I | GGNCC | 4 cut(s) | 25, 26, 113, 424 |
| SduI | GDGCHC | 1 cut(s) | 29 |
| SetI | ASST | 5 cut(s) | 93, 139, 295, 319, 355 |
| SfaNI | GCATC | 1 cut(s) | 325 |
| Sse9I | AATT | 4 cut(s) | 53, 330, 382, 416 |
| SsiI | CCGC | 1 cut(s) | 435 |
| SspMI | CTAG | 2 cut(s) | 92, 347 |
| TaaI | ACNGT | 1 cut(s) | 106 |
| TaiI | ACGT | 3 cut(s) | 139, 295, 355 |
| TasI | AATT | 4 cut(s) | 53, 330, 382, 416 |
| TscAI | CASTG | 1 cut(s) | 402 |
| TseI | GCWGC | 3 cut(s) | 201, 308, 356 |
| TspDTI | ATGAA | 5 cut(s) | 17, 66, 81, 197, 296 |
| TspGWI | ACGGA | 2 cut(s) | 175, 368 |
| TspRI | CASTG | 1 cut(s) | 402 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 17 |
| XapI | RAATTY | 2 cut(s) | 53, 416 |
| XspI | CTAG | 2 cut(s) | 92, 347 |