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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 615 |
| AccB1I | GGYRCC | 1 cut(s) | 1298 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 292 |
| AccI | GTMKAC | 2 cut(s) | 465, 576 |
| AccII | CGCG | 1 cut(s) | 246 |
| AclWI | GGATC | 1 cut(s) | 99 |
| AcoI | YGGCCR | 1 cut(s) | 1371 |
| AcsI | RAATTY | 3 cut(s) | 221, 341, 1106 |
| AcuI | CTGAAG | 2 cut(s) | 1167, 1191 |
| AfaI | GTAC | 4 cut(s) | 817, 893, 952, 1123 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 292 |
| AgsI | TTSAA | 3 cut(s) | 346, 667, 1212 |
| AjiI | CACGTC | 1 cut(s) | 478 |
| AjnI | CCWGG | 1 cut(s) | 760 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 387, 419 |
| AluBI | AGCT | 1 cut(s) | 486 |
| AluI | AGCT | 1 cut(s) | 486 |
| AlwI | GGATC | 1 cut(s) | 99 |
| Ama87I | CYCGRG | 1 cut(s) | 802 |
| AoxI | GGCC | 3 cut(s) | 25, 406, 1371 |
| ApeKI | GCWGC | 3 cut(s) | 327, 429, 486 |
| ApoI | RAATTY | 3 cut(s) | 221, 341, 1106 |
| AseI | ATTAAT | 1 cut(s) | 390 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 341 |
| AspS9I | GGNCC | 1 cut(s) | 407 |
| AsuHPI | GGTGA | 4 cut(s) | 287, 542, 616, 710 |
| AvaI | CYCGRG | 1 cut(s) | 802 |
| BaeGI | GKGCMC | 2 cut(s) | 642, 752 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 883, 916 |
| BalI | TGGCCA | 1 cut(s) | 1373 |
| BanI | GGYRCC | 1 cut(s) | 1298 |
| BbsI | GAAGAC | 1 cut(s) | 184 |
| BbvI | GCAGC | 3 cut(s) | 314, 441, 473 |
| BccI | CCATC | 5 cut(s) | 17, 554, 965, 1109, 1310 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 11, 21, 34, 45, 55 |
| BciT130I | CCWGG | 1 cut(s) | 762 |
| BclI | TGATCA | 1 cut(s) | 1362 |
| BfaI | CTAG | 3 cut(s) | 422, 581, 996 |
| BfmI | CTRYAG | 4 cut(s) | 186, 654, 810, 1051 |
| BfuAI | ACCTGC | 1 cut(s) | 615 |
| BglII | AGATCT | 2 cut(s) | 110, 806 |
| BisI | GCNGC | 3 cut(s) | 328, 430, 487 |
| BlsI | GCNGC | 3 cut(s) | 329, 431, 488 |
| Bme1390I | CCNGG | 1 cut(s) | 762 |
| BmeT110I | CYCGRG | 1 cut(s) | 802 |
| BmgBI | CACGTC | 1 cut(s) | 478 |
| BmgT120I | GGNCC | 1 cut(s) | 407 |
| BmiI | GGNNCC | 2 cut(s) | 782, 1300 |
| BmrFI | CCNGG | 1 cut(s) | 762 |
| BmsI | GCATC | 3 cut(s) | 8, 416, 528 |
| BpiI | GAAGAC | 1 cut(s) | 184 |
| BsaBI | GATNNNNATC | 1 cut(s) | 109 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 292 |
| Bse118I | RCCGGY | 1 cut(s) | 979 |
| Bse1I | ACTGG | 2 cut(s) | 328, 572 |
| Bse3DI | GCAATG | 1 cut(s) | 1170 |
| Bse8I | GATNNNNATC | 1 cut(s) | 109 |
| BseBI | CCWGG | 1 cut(s) | 762 |
| BseGI | GGATG | 3 cut(s) | 23, 431, 619 |
| BseJI | GATNNNNATC | 1 cut(s) | 109 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 292 |
| BseMI | GCAATG | 1 cut(s) | 1170 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 2 cut(s) | 328, 572 |
| BseSI | GKGCMC | 2 cut(s) | 642, 752 |
| BseXI | GCAGC | 3 cut(s) | 314, 441, 473 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 3 cut(s) | 27, 408, 1373 |
| BshNI | GGYRCC | 1 cut(s) | 1298 |
| BsiHKCI | CYCGRG | 1 cut(s) | 802 |
| BsiSI | CCGG | 1 cut(s) | 980 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsnI | GGCC | 3 cut(s) | 27, 408, 1373 |
| BsoBI | CYCGRG | 1 cut(s) | 802 |
| Bsp1286I | GDGCHC | 2 cut(s) | 642, 752 |
| Bsp143I | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| Bsp68I | TCGCGA | 1 cut(s) | 246 |
| BspANI | GGCC | 3 cut(s) | 27, 408, 1373 |
| BspCNI | CTCAG | 1 cut(s) | 212 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 1287 |
| BspLI | GGNNCC | 2 cut(s) | 782, 1300 |
| BspMAI | CTGCAG | 1 cut(s) | 1055 |
| BspMI | ACCTGC | 1 cut(s) | 615 |
| BspPI | GGATC | 1 cut(s) | 99 |
| BspT107I | GGYRCC | 1 cut(s) | 1298 |
| BsrDI | GCAATG | 1 cut(s) | 1170 |
| BsrFI | RCCGGY | 1 cut(s) | 979 |
| BsrI | ACTGG | 2 cut(s) | 328, 572 |
| BssAI | RCCGGY | 1 cut(s) | 979 |
| BssMI | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| BssNAI | GTATAC | 1 cut(s) | 577 |
| Bst1107I | GTATAC | 1 cut(s) | 577 |
| Bst2UI | CCWGG | 1 cut(s) | 762 |
| Bst4CI | ACNGT | 6 cut(s) | 39, 355, 443, 655, 912, 924 |
| Bst6I | CTCTTC | 2 cut(s) | 138, 1213 |
| BstDEI | CTNAG | 3 cut(s) | 199, 208, 1382 |
| BstF5I | GGATG | 3 cut(s) | 23, 431, 619 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstKTI | GATC | 6 cut(s) | 107, 113, 809, 1007, 1020, 1365 |
| BstMBI | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| BstNI | CCWGG | 1 cut(s) | 762 |
| BstSCI | CCNGG | 1 cut(s) | 760 |
| BstSFI | CTRYAG | 4 cut(s) | 186, 654, 810, 1051 |
| BstSLI | GKGCMC | 2 cut(s) | 642, 752 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV1I | GCAGC | 3 cut(s) | 314, 441, 473 |
| BstV2I | GAAGAC | 1 cut(s) | 184 |
| BstX2I | RGATCY | 3 cut(s) | 104, 110, 806 |
| BstYI | RGATCY | 3 cut(s) | 104, 110, 806 |
| BstZ17I | GTATAC | 1 cut(s) | 577 |
| BsuRI | GGCC | 3 cut(s) | 27, 408, 1373 |
| BtgZI | GCGATG | 1 cut(s) | 36 |
| BtrI | CACGTC | 1 cut(s) | 478 |
| BtsCI | GGATG | 3 cut(s) | 23, 431, 619 |
| BtuMI | TCGCGA | 1 cut(s) | 246 |
| BveI | ACCTGC | 1 cut(s) | 615 |
| CciI | TCATGA | 1 cut(s) | 1287 |
| Cfr10I | RCCGGY | 1 cut(s) | 979 |
| Cfr13I | GGNCC | 1 cut(s) | 407 |
| Csp6I | GTAC | 4 cut(s) | 816, 892, 951, 1122 |
| CviAII | CATG | 7 cut(s) | 503, 724, 895, 990, 1288, 1366, 1375 |
| CviQI | GTAC | 4 cut(s) | 816, 892, 951, 1122 |
| DdeI | CTNAG | 3 cut(s) | 199, 208, 1382 |
| DpnI | GATC | 6 cut(s) | 106, 112, 808, 1006, 1019, 1364 |
| DpnII | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| DraI | TTTAAA | 2 cut(s) | 253, 709 |
| EaeI | YGGCCR | 1 cut(s) | 1371 |
| Eam1104I | CTCTTC | 2 cut(s) | 138, 1213 |
| EarI | CTCTTC | 2 cut(s) | 138, 1213 |
| Eco57I | CTGAAG | 2 cut(s) | 1167, 1191 |
| Eco88I | CYCGRG | 1 cut(s) | 802 |
| EcoRI | GAATTC | 2 cut(s) | 341, 1106 |
| EcoRII | CCWGG | 1 cut(s) | 760 |
| EcoT22I | ATGCAT | 2 cut(s) | 521, 1244 |
| FaeI | CATG | 7 cut(s) | 506, 727, 898, 993, 1291, 1369, 1378 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 153, 185 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 7 cut(s) | 502, 723, 894, 989, 1287, 1365, 1374 |
| FauNDI | CATATG | 1 cut(s) | 1238 |
| FbaI | TGATCA | 1 cut(s) | 1362 |
| FblI | GTMKAC | 2 cut(s) | 465, 576 |
| Fnu4HI | GCNGC | 3 cut(s) | 328, 430, 487 |
| FokI | GGATG | 3 cut(s) | 30, 438, 626 |
| Fsp4HI | GCNGC | 3 cut(s) | 328, 430, 487 |
| FspBI | CTAG | 3 cut(s) | 422, 581, 996 |
| GluI | GCNGC | 3 cut(s) | 328, 430, 487 |
| HaeIII | GGCC | 3 cut(s) | 27, 408, 1373 |
| HapII | CCGG | 1 cut(s) | 980 |
| Hin1II | CATG | 7 cut(s) | 506, 727, 898, 993, 1291, 1369, 1378 |
| HincII | GTYRAC | 1 cut(s) | 466 |
| HindII | GTYRAC | 1 cut(s) | 466 |
| HinfI | GANTC | 7 cut(s) | 7, 230, 499, 935, 1012, 1187, 1229 |
| HpaII | CCGG | 1 cut(s) | 980 |
| HphI | GGTGA | 4 cut(s) | 287, 542, 616, 710 |
| Hpy166II | GTNNAC | 2 cut(s) | 466, 577 |
| Hpy188I | TCNGA | 9 cut(s) | 202, 336, 876, 1017, 1147, 1171, 1180, 1192, 1200 |
| Hpy188III | TCNNGA | 3 cut(s) | 108, 245, 1288 |
| Hpy8I | GTNNAC | 2 cut(s) | 466, 577 |
| Hpy99I | CGWCG | 1 cut(s) | 43 |
| HpyAV | CCTTC | 6 cut(s) | 521, 604, 677, 851, 1285, 1324 |
| HpyCH4III | ACNGT | 6 cut(s) | 39, 355, 443, 655, 912, 924 |
| HpyCH4IV | ACGT | 2 cut(s) | 477, 953 |
| HpyF3I | CTNAG | 3 cut(s) | 199, 208, 1382 |
| HpySE526I | ACGT | 2 cut(s) | 477, 953 |
| Hsp92II | CATG | 7 cut(s) | 506, 727, 898, 993, 1291, 1369, 1378 |
| Ksp22I | TGATCA | 1 cut(s) | 1362 |
| Kzo9I | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| LmnI | GCTCC | 1 cut(s) | 494 |
| Lsp1109I | GCAGC | 3 cut(s) | 314, 441, 473 |
| LweI | GCATC | 3 cut(s) | 8, 416, 528 |
| MaeI | CTAG | 3 cut(s) | 422, 581, 996 |
| MaeII | ACGT | 2 cut(s) | 477, 953 |
| MaeIII | GTNAC | 4 cut(s) | 142, 530, 698, 1066 |
| MalI | GATC | 6 cut(s) | 106, 112, 808, 1006, 1019, 1364 |
| MboI | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| MboII | GAAGA | 7 cut(s) | 94, 125, 184, 679, 832, 1160, 1200 |
| MfeI | CAATTG | 3 cut(s) | 57, 381, 972 |
| MflI | RGATCY | 3 cut(s) | 104, 110, 806 |
| MhlI | GDGCHC | 2 cut(s) | 642, 752 |
| MlsI | TGGCCA | 1 cut(s) | 1373 |
| MluNI | TGGCCA | 1 cut(s) | 1373 |
| MlyI | GAGTC | 2 cut(s) | 1021, 1238 |
| MmeI | TCCRAC | 1 cut(s) | 1257 |
| Mox20I | TGGCCA | 1 cut(s) | 1373 |
| Mph1103I | ATGCAT | 2 cut(s) | 521, 1244 |
| MroXI | GAANNNNTTC | 1 cut(s) | 341 |
| MscI | TGGCCA | 1 cut(s) | 1373 |
| MseI | TTAA | 9 cut(s) | 219, 252, 390, 438, 495, 629, 708, 1047, 1158 |
| Msp20I | TGGCCA | 1 cut(s) | 1373 |
| MspI | CCGG | 1 cut(s) | 980 |
| MspR9I | CCNGG | 1 cut(s) | 762 |
| MunI | CAATTG | 3 cut(s) | 57, 381, 972 |
| MvaI | CCWGG | 1 cut(s) | 762 |
| MvnI | CGCG | 1 cut(s) | 246 |
| NdeI | CATATG | 1 cut(s) | 1238 |
| NdeII | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| NlaIII | CATG | 7 cut(s) | 506, 727, 898, 993, 1291, 1369, 1378 |
| NlaIV | GGNNCC | 2 cut(s) | 782, 1300 |
| NmuCI | GTSAC | 4 cut(s) | 142, 530, 698, 1066 |
| NruI | TCGCGA | 1 cut(s) | 246 |
| NsiI | ATGCAT | 2 cut(s) | 521, 1244 |
| PagI | TCATGA | 1 cut(s) | 1287 |
| PdmI | GAANNNNTTC | 1 cut(s) | 341 |
| PfeI | GAWTC | 4 cut(s) | 230, 499, 935, 1187 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 292 |
| PkrI | GCNGC | 3 cut(s) | 329, 431, 488 |
| PleI | GAGTC | 2 cut(s) | 1020, 1237 |
| PpsI | GAGTC | 2 cut(s) | 1020, 1237 |
| PshBI | ATTAAT | 1 cut(s) | 390 |
| Psp6I | CCWGG | 1 cut(s) | 760 |
| PspGI | CCWGG | 1 cut(s) | 760 |
| PspN4I | GGNNCC | 2 cut(s) | 782, 1300 |
| PspPI | GGNCC | 1 cut(s) | 407 |
| PstI | CTGCAG | 1 cut(s) | 1055 |
| PsuI | RGATCY | 3 cut(s) | 104, 110, 806 |
| RruI | TCGCGA | 1 cut(s) | 246 |
| RsaI | GTAC | 4 cut(s) | 817, 893, 952, 1123 |
| RsaNI | GTAC | 4 cut(s) | 816, 892, 951, 1122 |
| SalI | GTCGAC | 1 cut(s) | 464 |
| SaqAI | TTAA | 9 cut(s) | 219, 252, 390, 438, 495, 629, 708, 1047, 1158 |
| SatI | GCNGC | 3 cut(s) | 328, 430, 487 |
| Sau3AI | GATC | 6 cut(s) | 104, 110, 806, 1004, 1017, 1362 |
| Sau96I | GGNCC | 1 cut(s) | 407 |
| SchI | GAGTC | 2 cut(s) | 1021, 1238 |
| ScrFI | CCNGG | 1 cut(s) | 762 |
| SduI | GDGCHC | 2 cut(s) | 642, 752 |
| SfaNI | GCATC | 3 cut(s) | 8, 416, 528 |
| SfcI | CTRYAG | 4 cut(s) | 186, 654, 810, 1051 |
| SspI | AATATT | 2 cut(s) | 741, 1077 |
| SspMI | CTAG | 3 cut(s) | 422, 581, 996 |
| StyD4I | CCNGG | 1 cut(s) | 760 |
| TaaI | ACNGT | 6 cut(s) | 39, 355, 443, 655, 912, 924 |
| TaiI | ACGT | 2 cut(s) | 480, 956 |
| TaqI | TCGA | 7 cut(s) | 10, 465, 844, 1020, 1110, 1269, 1305 |
| TaqII | GACCGA | 1 cut(s) | 1115 |
| TfiI | GAWTC | 4 cut(s) | 230, 499, 935, 1187 |
| Tru1I | TTAA | 9 cut(s) | 219, 252, 390, 438, 495, 629, 708, 1047, 1158 |
| Tru9I | TTAA | 9 cut(s) | 219, 252, 390, 438, 495, 629, 708, 1047, 1158 |
| TseFI | GTSAC | 4 cut(s) | 142, 530, 698, 1066 |
| TseI | GCWGC | 3 cut(s) | 327, 429, 486 |
| Tsp45I | GTSAC | 4 cut(s) | 142, 530, 698, 1066 |
| TspDTI | ATGAA | 8 cut(s) | 408, 491, 540, 623, 780, 1119, 1304, 1343 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 292 |
| VspI | ATTAAT | 1 cut(s) | 390 |
| XapI | RAATTY | 3 cut(s) | 221, 341, 1106 |
| XmiI | GTMKAC | 2 cut(s) | 465, 576 |
| XmnI | GAANNNNTTC | 1 cut(s) | 341 |
| XspI | CTAG | 3 cut(s) | 422, 581, 996 |
| Zsp2I | ATGCAT | 2 cut(s) | 521, 1244 |