Rh6CG205500

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000030
Physical Location & Seq
Reverse (-)
34246343 .. 34259626
13284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG205500.1

Sequence Viewer

Length: 1884 bp
ATGGAAGACGTAGCGAAGCTGAAGAACATAATTTATAGGGAAGAAAATCAGGTCAGCGAGAGTGCTGTTGAAGTGGCCAGTCTGACAACTGATGATGATTGCAAGACATTGTCCGGTGTTAATGACGAATCCGACCTCGAGGTTACAATCAGAACAGTGTGTCGAGGAAAACACTTCAGAAGAACTATGTCTTCCCTGTCAGATGAAAAGGTAGCTGCGACATATGAAATTGGGTTTGGGTCACTGCACCGATTTCGTTGTGGCAAAGTGAACCTCCCACTGTGCCAAATGCTGGTTGAAAATTTTGATGTTGGGAACTCATGCATCAAGATACACGGAAGGAACCTGACAATCACACATGAAGACTTTCGGCGCATTATAGGCGTCATGGATGGAGGGTGCGATGTGAATCTTGAAGGAAGCACCGAGGACCCTGATATACTGGGGCTGAAGAGCAAGCTTTCAAGGAAGGAGAAGGAGATAACCATACATGGTCTGAGGAGGTTGTTGATTGAATCTGAAAGTACCGACGACACTTTTAAGTTACGGGAATCGAAGTTGATGCAAGATAAGCTTAAGGATCCTAATGCCCTGGGTTCAAAAAACTGGGCAAAGTTTGCATTCGCCAAGCTTGTTGAAGGGGTGTCATCATTTCAGGCCACGCGGACTGGTTTGGCAGGAGGTTGTATTCTGTTCCTTCAATTGTTCTACCTGGACGTTGTTGGCAACGGTATCTGTATATATCCAAAGATTGGGAAACCAGTGATGACCTGGAGCAGAGATGACTTGAAGAGAGTTTATGAAAAAGTGGAGAGCGAGGGCGGATTTAAAAGCGAGAATGTGCGTGTAACGAAGAAGTATTTCAGGGGAAATGTACTTTCAGGGACTGGATCAGTTGATCCCAGCACAGGGATTAAGACAACTGTAGTAGACGATTTATCAGAAGTGAGGTCTGATATTGGTGTTGTGAAAGGGGATATAGAGAGTTTGAAGTTAACAGTTGGTCGGTTGGAGCCAGACATGGGTCGATTGAGGAGAGCAATTCTGACTCTAGAATCCACGGTTGGGGAACTTAAGGCCAACGGTCTCGGCGGCATTGTTGCTGAAGCAATCAAGCAAATGTTTGAAGAGAAGTCCTACACTTACGGTGGTAATTTTGGGAACGATGGTCTTTTTATCAATGAAGAGCACCAAGGCACAGAAGCTGAGCAACATGACGATGAGATGCCTCATAACAAATCTATCATTGTCATGTCCACTCACAATGATGCATATGGATGTGATAGCAGTGACATGGAAGAAGATGAGGCAGGGAGTTTCCCGGCGGTGTCTGAGATATCGCACAGCGACTCATACCTACTGACCTATCTATTCAGCAAGAAGGTTACCGCCGACGTCAGTGTTGGGAGCAATGAAGTTGCTAGGCACGAGGAATGGTCTGTTTCTCGATGGGATATGAGGAGCTTGTCCCCAATGCAATGTCTGACCTGTGAGATTGTTGACATATCGGCTGCTTACTTGTTTGATCGGGGATCGGACGACTGGTTCATGCCAACTTCATTCTCAGAACGTGCTAAGGAGTATTTAGCGGGTGTGCAGGTGGAAGGTCTTGTGCCATCTACAGTTAAACTGTGCCGACTGGGAAGATTCATTGGTAGATTTATGTCATGCAAAAAGTTTAACTCGGGGGACCAGAGGGTTCGTATGGCACTTGAGACAGTGAATCACCCGAAGAATGAAGTTCTGGAACAGGTCTTCAAAGCTGCTGCAGAGGAAGTCCCATATGATGTAGCATCTGCATGGTTGGCACAAGAATATTTGAACGAAAATGGAAGTCTCCCAACTGCAGGCATGAAGTTCAACCCACGCCGGGCTAGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

627

Amino Acids

69.82

Weight (kDa)

5.39

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1588
AatII GACGTC 1 cut(s) 1398
AbsI CCTCGAGG 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 1588
AccB7I CCANNNNNTGG 2 cut(s) 292, 752
AccI GTMKAC 1 cut(s) 930
AccII CGCG 1 cut(s) 664
AciI CCGC 6 cut(s) 664, 822, 1092, 1325, 1389, 1589
AclWI GGATC 5 cut(s) 575, 588, 893, 898, 1540
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 4 cut(s) 41, 160, 470, 1125
AcyI GRCGYC 2 cut(s) 384, 1395
AfaI GTAC 2 cut(s) 526, 876
AfiI CCNNNNNNNGG 8 cut(s) 292, 752, 908, 909, 1022, 1065, 1847, 1870
AflII CTTAAG 2 cut(s) 575, 1073
AjnI CCWGG 3 cut(s) 591, 711, 770
AjuI GAANNNNNNNTTGG 4 cut(s) 219, 251, 1047, 1079
AloI GAACNNNNNNTCC 2 cut(s) 1529, 1561
AluBI AGCT 8 cut(s) 19, 215, 460, 574, 631, 1205, 1464, 1763
AluI AGCT 8 cut(s) 19, 215, 460, 574, 631, 1205, 1464, 1763
Alw21I GWGCWC 1 cut(s) 1191
Alw26I GTCTC 3 cut(s) 1091, 1709, 1841
AlwI GGATC 5 cut(s) 575, 588, 893, 898, 1540
AlwNI CAGNNNCTG 2 cut(s) 887, 1205
Ama87I CYCGRG 2 cut(s) 137, 1684
AoxI GGCC 3 cut(s) 75, 657, 1077
ApeKI GCWGC 4 cut(s) 215, 1511, 1763, 1766
ApoI RAATTY 1 cut(s) 301
Asp700I GAANNNNTTC 2 cut(s) 366, 860
AspLEI GCGC 2 cut(s) 375, 1881
AspS9I GGNCC 2 cut(s) 430, 1690
AsuC2I CCSGG 2 cut(s) 1322, 1871
AsuHPI GGTGA 1 cut(s) 1718
AvaI CYCGRG 2 cut(s) 137, 1684
AvaII GGWCC 2 cut(s) 430, 1690
BalI TGGCCA 1 cut(s) 77
BamHI GGATCC 1 cut(s) 580
BauI CACGAG 1 cut(s) 1427
BbsI GAAGAC 4 cut(s) 12, 183, 369, 1747
Bbv12I GWGCWC 1 cut(s) 1191
BbvI GCAGC 4 cut(s) 202, 1498, 1750, 1753
BccI CCATC 4 cut(s) 386, 1160, 1443, 1624
BcgI CGANNNNNNTGC 4 cut(s) 236, 270, 544, 578
BciT130I CCWGG 3 cut(s) 593, 713, 772
BcnI CCSGG 2 cut(s) 1322, 1871
BcoDI GTCTC 3 cut(s) 1091, 1709, 1841
BfaI CTAG 3 cut(s) 1052, 1422, 1875
BfmI CTRYAG 4 cut(s) 924, 1620, 1767, 1845
BfoI RGCGCY 1 cut(s) 1882
BfrI CTTAAG 2 cut(s) 575, 1073
BfuAI ACCTGC 1 cut(s) 1588
BisI GCNGC 5 cut(s) 216, 1093, 1512, 1764, 1767
BlpI GCTNAGC 1 cut(s) 1206
BlsI GCNGC 5 cut(s) 217, 1094, 1513, 1765, 1768
Bme1390I CCNGG 5 cut(s) 593, 713, 772, 1322, 1871
Bme18I GGWCC 2 cut(s) 430, 1690
BmeT110I CYCGRG 2 cut(s) 137, 1684
BmgT120I GGNCC 2 cut(s) 430, 1690
BmiI GGNNCC 5 cut(s) 344, 432, 582, 1014, 1691
BmrFI CCNGG 5 cut(s) 593, 713, 772, 1322, 1871
BmrI ACTGGG 3 cut(s) 452, 616, 1649
BmsI GCATC 5 cut(s) 333, 552, 1215, 1258, 1802
BmuI ACTGGG 3 cut(s) 452, 616, 1649
BoxI GACNNNNGTC 1 cut(s) 1023
BpiI GAAGAC 4 cut(s) 12, 183, 369, 1747
BpmI CTGGAG 1 cut(s) 793
Bpu10I CCTNAGC 1 cut(s) 1575
Bpu1102I GCTNAGC 1 cut(s) 1206
BpuEI CTTGAG 1 cut(s) 1733
BpuMI CCSGG 2 cut(s) 1322, 1871
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 2 cut(s) 384, 1395
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 5 cut(s) 426, 591, 592, 1059, 1192
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 8 cut(s) 292, 752, 908, 909, 1022, 1065, 1847, 1870
Bse1I ACTGG 8 cut(s) 78, 447, 611, 673, 761, 892, 1547, 1644
Bse3DI GCAATG 2 cut(s) 1417, 1484
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 3 cut(s) 593, 713, 772
BseDI CCNNGG 5 cut(s) 426, 591, 592, 1059, 1192
BseGI GGATG 2 cut(s) 397, 1283
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 8 cut(s) 292, 752, 908, 909, 1022, 1065, 1847, 1870
BseMI GCAATG 2 cut(s) 1417, 1484
BseMII CTCAG 4 cut(s) 488, 1197, 1323, 1578
BseNI ACTGG 8 cut(s) 78, 447, 611, 673, 761, 892, 1547, 1644
BseRI GAGGAG 3 cut(s) 514, 1048, 1474
BseXI GCAGC 4 cut(s) 202, 1498, 1750, 1753
BseYI CCCAGC 1 cut(s) 902
BsgI GTGCAG 2 cut(s) 230, 1616
Bsh1236I CGCG 1 cut(s) 664
BshFI GGCC 3 cut(s) 77, 659, 1079
BsiHKAI GWGCWC 1 cut(s) 1191
BsiHKCI CYCGRG 2 cut(s) 137, 1684
BsiSI CCGG 3 cut(s) 114, 1322, 1870
BslFI GGGAC 4 cut(s) 898, 1453, 1703, 1763
BslI CCNNNNNNNGG 8 cut(s) 292, 752, 908, 909, 1022, 1065, 1847, 1870
BsmAI GTCTC 3 cut(s) 1091, 1709, 1841
BsmFI GGGAC 4 cut(s) 898, 1453, 1703, 1763
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 3 cut(s) 77, 659, 1079
Bso31I GGTCTC 1 cut(s) 1091
BsoBI CYCGRG 2 cut(s) 137, 1684
Bsp1286I GDGCHC 1 cut(s) 1191
Bsp143I GATC 5 cut(s) 580, 890, 898, 1525, 1532
Bsp1720I GCTNAGC 1 cut(s) 1206
BspACI CCGC 6 cut(s) 664, 822, 1092, 1325, 1389, 1589
BspANI GGCC 3 cut(s) 77, 659, 1079
BspCNI CTCAG 4 cut(s) 489, 1198, 1324, 1577
BspFNI CGCG 1 cut(s) 664
BspLI GGNNCC 5 cut(s) 344, 432, 582, 1014, 1691
BspMAI CTGCAG 2 cut(s) 1771, 1849
BspMI ACCTGC 1 cut(s) 1588
BspPI GGATC 5 cut(s) 575, 588, 893, 898, 1540
BspQI GCTCTTC 2 cut(s) 446, 1179
BspTI CTTAAG 2 cut(s) 575, 1073
BspTNI GGTCTC 1 cut(s) 1091
BsrDI GCAATG 2 cut(s) 1417, 1484
BsrI ACTGG 8 cut(s) 78, 447, 611, 673, 761, 892, 1547, 1644
BssECI CCNNGG 5 cut(s) 426, 591, 592, 1059, 1192
BssMI GATC 5 cut(s) 580, 890, 898, 1525, 1532
BssNI GRCGYC 2 cut(s) 384, 1395
BssSI CACGAG 1 cut(s) 1427
BssT1I CCWWGG 1 cut(s) 1192
Bst2BI CACGAG 1 cut(s) 1427
Bst2UI CCWGG 3 cut(s) 593, 713, 772
Bst6I CTCTTC 4 cut(s) 446, 785, 1122, 1179
BstACI GRCGYC 2 cut(s) 384, 1395
BstAFI CTTAAG 2 cut(s) 575, 1073
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 458, 1849
BstDEI CTNAG 5 cut(s) 497, 1206, 1332, 1564, 1575
BstDSI CCRYGG 1 cut(s) 1059
BstEII GGTNACC 1 cut(s) 1384
BstF5I GGATG 2 cut(s) 397, 1283
BstFNI CGCG 1 cut(s) 664
BstH2I RGCGCY 1 cut(s) 1882
BstHHI GCGC 2 cut(s) 375, 1881
BstKTI GATC 5 cut(s) 583, 893, 901, 1528, 1535
BstMAI GTCTC 3 cut(s) 1091, 1709, 1841
BstMBI GATC 5 cut(s) 580, 890, 898, 1525, 1532
BstMWI GCNNNNNNNGC 4 cut(s) 381, 571, 617, 1805
BstNI CCWGG 3 cut(s) 593, 713, 772
BstPAI GACNNNNGTC 1 cut(s) 1023
BstPI GGTNACC 1 cut(s) 1384
BstSCI CCNGG 5 cut(s) 591, 711, 770, 1320, 1869
BstSFI CTRYAG 4 cut(s) 924, 1620, 1767, 1845
BstUI CGCG 1 cut(s) 664
BstV1I GCAGC 4 cut(s) 202, 1498, 1750, 1753
BstV2I GAAGAC 4 cut(s) 12, 183, 369, 1747
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 3 cut(s) 77, 659, 1079
BtgI CCRYGG 1 cut(s) 1059
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 397, 1283
BtsI GCAGTG 2 cut(s) 242, 1294
BtsIMutI CAGTG 7 cut(s) 162, 242, 278, 768, 1294, 1405, 1725
BveI ACCTGC 1 cut(s) 1588
Cac8I GCNNGC 2 cut(s) 458, 1849
CaiI CAGNNNCTG 2 cut(s) 887, 1205
CfoI GCGC 2 cut(s) 375, 1881
Cfr13I GGNCC 2 cut(s) 430, 1690
CseI GACGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 525, 875
CviQI GTAC 2 cut(s) 525, 875
DdeI CTNAG 5 cut(s) 497, 1206, 1332, 1564, 1575
DpnI GATC 5 cut(s) 582, 892, 900, 1527, 1534
DpnII GATC 5 cut(s) 580, 890, 898, 1525, 1532
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 4 cut(s) 446, 785, 1122, 1179
EarI CTCTTC 4 cut(s) 446, 785, 1122, 1179
EciI GGCGGA 1 cut(s) 837
Eco130I CCWWGG 1 cut(s) 1192
Eco31I GGTCTC 1 cut(s) 1091
Eco32I GATATC 1 cut(s) 1338
Eco47I GGWCC 2 cut(s) 430, 1690
Eco57I CTGAAG 4 cut(s) 41, 160, 470, 1125
Eco88I CYCGRG 2 cut(s) 137, 1684
Eco91I GGTNACC 1 cut(s) 1384
EcoO109I RGGNCCY 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 1384
EcoRII CCWGG 3 cut(s) 591, 711, 770
EcoRV GATATC 1 cut(s) 1338
EcoT14I CCWWGG 1 cut(s) 1192
EcoT22I ATGCAT 2 cut(s) 326, 1273
ErhI CCWWGG 1 cut(s) 1192
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 4 cut(s) 898, 1453, 1703, 1763
FauI CCCGC 1 cut(s) 1582
FauNDI CATATG 3 cut(s) 223, 1273, 1783
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 5 cut(s) 216, 1093, 1512, 1764, 1767
FokI GGATG 2 cut(s) 404, 1290
Fsp4HI GCNGC 5 cut(s) 216, 1093, 1512, 1764, 1767
FspBI CTAG 3 cut(s) 1052, 1422, 1875
GlaI GCGC 2 cut(s) 374, 1880
GluI GCNGC 5 cut(s) 216, 1093, 1512, 1764, 1767
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 793
HaeII RGCGCY 1 cut(s) 1882
HaeIII GGCC 3 cut(s) 77, 659, 1079
HapII CCGG 3 cut(s) 114, 1322, 1870
HgaI GACGC 1 cut(s) 373
HhaI GCGC 2 cut(s) 375, 1881
Hin1I GRCGYC 2 cut(s) 384, 1395
Hin6I GCGC 2 cut(s) 373, 1879
HinP1I GCGC 2 cut(s) 373, 1879
HincII GTYRAC 2 cut(s) 996, 1501
HindII GTYRAC 2 cut(s) 996, 1501
HindIII AAGCTT 3 cut(s) 458, 572, 629
HinfI GANTC 9 cut(s) 128, 409, 515, 551, 1048, 1055, 1349, 1647, 1723
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 3 cut(s) 114, 1322, 1870
HphI GGTGA 1 cut(s) 1718
Hpy166II GTNNAC 5 cut(s) 271, 931, 996, 1257, 1501
Hpy188III TCNNGA 5 cut(s) 328, 413, 1052, 1446, 1745
Hpy8I GTNNAC 5 cut(s) 271, 931, 996, 1257, 1501
Hpy99I CGWCG 2 cut(s) 533, 1397
HpyAV CCTTC 8 cut(s) 333, 410, 463, 469, 632, 707, 1375, 1598
HpyCH4IV ACGT 4 cut(s) 9, 717, 1395, 1570
HpyF10VI GCNNNNNNNGC 4 cut(s) 381, 571, 617, 1805
HpyF3I CTNAG 5 cut(s) 497, 1206, 1332, 1564, 1575
HpySE526I ACGT 4 cut(s) 9, 717, 1395, 1570
Hsp92I GRCGYC 2 cut(s) 384, 1395
HspAI GCGC 2 cut(s) 373, 1879
KspAI GTTAAC 1 cut(s) 996
Kzo9I GATC 5 cut(s) 580, 890, 898, 1525, 1532
LguI GCTCTTC 2 cut(s) 446, 1179
LmnI GCTCC 4 cut(s) 774, 1012, 1407, 1461
Lsp1109I GCAGC 4 cut(s) 202, 1498, 1750, 1753
LweI GCATC 5 cut(s) 333, 552, 1215, 1258, 1802
MaeI CTAG 3 cut(s) 1052, 1422, 1875
MaeII ACGT 4 cut(s) 9, 717, 1395, 1570
MaeIII GTNAC 6 cut(s) 142, 240, 543, 847, 1289, 1384
MalI GATC 5 cut(s) 582, 892, 900, 1527, 1534
MboI GATC 5 cut(s) 580, 890, 898, 1525, 1532
MfeI CAATTG 1 cut(s) 701
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 1191
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 6 cut(s) 30, 228, 301, 701, 1041, 1153
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 2 cut(s) 1042, 1343
MmeI TCCRAC 2 cut(s) 156, 990
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 2 cut(s) 326, 1273
MroXI GAANNNNTTC 2 cut(s) 366, 860
MscI TGGCCA 1 cut(s) 77
MseI TTAA 9 cut(s) 120, 540, 576, 828, 915, 995, 1074, 1626, 1680
MslI CAYNNNNRTG 5 cut(s) 1218, 1250, 1266, 1276, 1798
Msp20I TGGCCA 1 cut(s) 77
MspCI CTTAAG 2 cut(s) 575, 1073
MspI CCGG 3 cut(s) 114, 1322, 1870
MspR9I CCNGG 5 cut(s) 593, 713, 772, 1322, 1871
MunI CAATTG 1 cut(s) 701
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 3 cut(s) 593, 713, 772
MvnI CGCG 1 cut(s) 664
MwoI GCNNNNNNNGC 4 cut(s) 381, 571, 617, 1805
NciI CCSGG 2 cut(s) 1322, 1871
NdeI CATATG 3 cut(s) 223, 1273, 1783
NdeII GATC 5 cut(s) 580, 890, 898, 1525, 1532
NlaIV GGNNCC 5 cut(s) 344, 432, 582, 1014, 1691
NmeAIII GCCGAG 1 cut(s) 1068
NmuCI GTSAC 2 cut(s) 240, 1289
NsiI ATGCAT 2 cut(s) 326, 1273
PaeR7I CTCGAG 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 1588
PasI CCCWGGG 1 cut(s) 592
PciSI GCTCTTC 2 cut(s) 446, 1179
PctI GAATGC 1 cut(s) 620
PdmI GAANNNNTTC 2 cut(s) 366, 860
PfeI GAWTC 7 cut(s) 128, 409, 515, 551, 1055, 1647, 1723
PflFI GACNNNGTC 1 cut(s) 109
PflMI CCANNNNNTGG 2 cut(s) 292, 752
PkrI GCNGC 5 cut(s) 217, 1094, 1513, 1765, 1768
PleI GAGTC 2 cut(s) 1042, 1343
PpsI GAGTC 2 cut(s) 1042, 1343
PpuMI RGGWCCY 1 cut(s) 430
PshAI GACNNNNGTC 1 cut(s) 1023
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 591, 711, 770
PspEI GGTNACC 1 cut(s) 1384
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 3 cut(s) 591, 711, 770
PspN4I GGNNCC 5 cut(s) 344, 432, 582, 1014, 1691
PspPI GGNCC 2 cut(s) 430, 1690
PspPPI RGGWCCY 1 cut(s) 430
PspXI VCTCGAGB 1 cut(s) 137
PstI CTGCAG 2 cut(s) 1771, 1849
PstNI CAGNNNCTG 2 cut(s) 887, 1205
PsuI RGATCY 1 cut(s) 580
PsyI GACNNNGTC 1 cut(s) 109
RsaI GTAC 2 cut(s) 526, 876
RsaNI GTAC 2 cut(s) 525, 875
RseI CAYNNNNRTG 5 cut(s) 1218, 1250, 1266, 1276, 1798
SapI GCTCTTC 2 cut(s) 446, 1179
SaqAI TTAA 9 cut(s) 120, 540, 576, 828, 915, 995, 1074, 1626, 1680
SatI GCNGC 5 cut(s) 216, 1093, 1512, 1764, 1767
Sau3AI GATC 5 cut(s) 580, 890, 898, 1525, 1532
Sau96I GGNCC 2 cut(s) 430, 1690
SchI GAGTC 2 cut(s) 1042, 1343
ScrFI CCNGG 5 cut(s) 593, 713, 772, 1322, 1871
SduI GDGCHC 1 cut(s) 1191
SfaNI GCATC 5 cut(s) 333, 552, 1215, 1258, 1802
SfcI CTRYAG 4 cut(s) 924, 1620, 1767, 1845
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 2 cut(s) 430, 1690
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 5 cut(s) 1218, 1250, 1266, 1276, 1798
SmlI CTYRAG 4 cut(s) 137, 575, 1073, 1712
SmoI CTYRAG 4 cut(s) 137, 575, 1073, 1712
Sse9I AATT 6 cut(s) 30, 228, 301, 701, 1041, 1153
SsiI CCGC 6 cut(s) 664, 822, 1092, 1325, 1389, 1589
SspI AATATT 1 cut(s) 1817
SspMI CTAG 3 cut(s) 1052, 1422, 1875
StyD4I CCNGG 5 cut(s) 591, 711, 770, 1320, 1869
StyI CCWWGG 1 cut(s) 1192
TaiI ACGT 4 cut(s) 12, 720, 1398, 1573
TaqI TCGA 5 cut(s) 138, 163, 554, 1027, 1447
TasI AATT 6 cut(s) 30, 228, 301, 701, 1041, 1153
TatI WGTACW 1 cut(s) 874
TauI GCSGC 1 cut(s) 1095
TfiI GAWTC 7 cut(s) 128, 409, 515, 551, 1055, 1647, 1723
Tru1I TTAA 9 cut(s) 120, 540, 576, 828, 915, 995, 1074, 1626, 1680
Tru9I TTAA 9 cut(s) 120, 540, 576, 828, 915, 995, 1074, 1626, 1680
TscAI CASTG 7 cut(s) 162, 249, 285, 768, 1294, 1405, 1725
TseFI GTSAC 2 cut(s) 240, 1289
TseI GCWGC 4 cut(s) 215, 1511, 1763, 1766
Tsp45I GTSAC 2 cut(s) 240, 1289
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 7 cut(s) 162, 249, 285, 768, 1294, 1405, 1725
Tth111I GACNNNGTC 1 cut(s) 109
Van91I CCANNNNNTGG 2 cut(s) 292, 752
Vha464I CTTAAG 2 cut(s) 575, 1073
VpaK11BI GGWCC 2 cut(s) 430, 1690
XapI RAATTY 1 cut(s) 301
XbaI TCTAGA 1 cut(s) 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 768
XhoI CTCGAG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 2 cut(s) 366, 860
XspI CTAG 3 cut(s) 1052, 1422, 1875
ZraI GACGTC 1 cut(s) 1396
Zsp2I ATGCAT 2 cut(s) 326, 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.