Rorug03G0329900

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000030
Physical Location & Seq
Reverse (-)
38213344 .. 38222926
9583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0329900.1

Sequence Viewer

Length: 2799 bp
ATGGCGGAGGTGTCGATGTGCAGGAGGAGTCCGGATGAAGAGAGGATTTTGATAAAAGACATTGCTTTGGCTGCCGAAGCCAAATCCAAAGAGGGCGATACCTTCTTCTTGATTACCCAAAGATGGTGGCAACATTGGATTGATTATGTGAACCAAGAACAACAGCCCGATGTCTCAGAGCATTGTGATTCAAGTAGCTTCAAGAGGCCTGCTGGTATTGATAATTCCGATTTGATATCCGACGACGCCATTGAGATACAGGATACTTTATTAGAAGGCCGTGACTATGTGTTGCTCCCGCAACAAGTTTGGAACCAGTTGCATACATGGTATGGAGGTGGGCCAACATTACCCAGGAGAGTCATTAGTTCAGGTCCTTCTCACACAGAGATGGCTGTTGAAGTCTACCCTCTGCGTCTCCAATTGCTTGTGGTGCCAAAAGGCGGCCTCTCGACTATAAGAATAAGCAAGAAAGAAACAATTGGAGAGCTTCACAGAAGAGCTTGTGAAATCTTTGATCTTAGCCCGGAACAAGTATGCATTTGGGATTTCTATGGACGCAAGCAACATGCCCTCATGACCGACATTGATAAAACACTTGATGATGCGAATATACAAATGGACCAGGATATTCTGGTGGAGGTCCTTAGTCCTGACAATGGTACGAGACCGAGTGGATACACAAGTTCTGTTCGTTACGATGGATCTTTAGAAAAGGAAGCTGCCTCAGTTCTTGTAGAGCCTTCTAAGTCAAGCTTGTCGATTGCTGGAGGTTTATCTGCAAGCAAGGGTGCATCAAGAAGCTATAACACAGAGCTTGCACAAAGTCAAAGCCTGACTTCAGTTAGAGAATTGGATACTACTTATGGGACAATCGGTGTTAGTACAAGAGGTTCGTCTGGTGGTTTGACTGGGTTGCAGAACCTAGGGAATACTTGTTTTATGAACAGTGCTATACAATGCCTTGTTCATACACCAGAGTTCGCCAGATATTTTCGGGAAGATTATCATCAAGAGATAAACTGGGAAAACACTCTGGGTATGCGCGGTGAGCTAGCTCTAGCATTCGGCGAATTACTGCGGAAGCTTTGGGCACCCGGACGAACACCAGTTGCTCCTCGACCTTTTAAAACAAAACTTGCTCGTTTTGCCCCCCAATTCAGTGGTTACAATCAACATGATTCTCAGGAACTTTTGGCTTTTTTGCTAGATGGTCTTCATGAAGATCTGAATCGTGTGAAACAGAAACCTTATATAAAATCTAAAGATGCTGATGGTCGGCCTGATGAAGAAGTTGCTGATGAATATTGGGCAAACCACATTGCTCGTAATGATTCCATAATCGTCGATGTATGCCAAGGCCAATACAAATCAACTTTGGTTTGCCCCATTTGTAACAAAGTCTCTGTTACATTTGATCCCTTCATGTACCTATCATTGCCCCTGCAGCCCACCACAACTAGAACAATGACAGTAACAGTCTTTTCATGCAATGGAAGTGCGTTGCCATCTGCTTACACTGTTACAGTTCCAAAACAGGGACGTTGCCGGGACTTGATCCAGGCACTTAGCAATGCTAGCTCTGTGAAGCACAGTGAGAGGCTTTTGCTTGTTGAGATACAAAACCACATGATTCAGCGATTTCTGGAAGACCCATTAATATTATTATCTACCATCAAAGATGATGATCATCTTGCTGCTTACAAGGTTCAAAAGTCAGCAAAGAACACAAAATATCTTCAGTTGATACACCGTCGTAAGGACCAAGGAACTAGTGATGGCCATATCACATCAGGATGGCTACCTTATGGAACACCTCTTCTGTCGGCTATCTCATGTGATGATGAAATCACAAGAGGCAACATACAGAACATGGTTCATACAATGCTTTCTCCAATGCTAAGAACTGAGAGTTTGGATCATACTGATATATCTGGTGCAAGATCTGCAATAGCGGCATCAAACCCCTCTGGAAACTTGCGTGGTGAAGCATGTACTGATTCCGCTATATCCAATTCAATGAATAATGATATCACCAGTTCTAAGCCAGTGAAATCACTAAAGTTGTCTCTTCAGTTGGTGGATGAAAGTAACGCATGCATTGATCTCTCAGTGGGGGAAGAGAAAGCTATCACATTGCCTTCGGCATCAACATCAATACTAGTATATGCTGATTGGTCACAGAAGCTTTTAGATAAATATCATACCCATTATCTGGAAAACTTGCCAGAAGTTTTTAAGTATGGACCTGTAACAAAGAAAGCCCGCACTGAACCTCTCTCCTTGTACACTTGCCTTGAAGCATTTCTACGTGAAGAACCACTGGTGCCTGAAGATATGTGGTACTGTCCCCAGTGCAAGGAGCGGCGACAAGCAAGTAAAAAGCTAGATCTTTGGAGGCTTCCCGAAGTGTTAGTCATCCATCTAAAGAGGTTCTCGTACAGCAGGTCAATGAAGCATAAACTGGAAACATTTGTCAACTTTCCCATTCATGACTTTGATCTAACCAATTACATTGCTCACAAAAGCAACTCTGGACATCAGCTTTACGAACTCTATGCTTTGACCAATCATTATGGTAGCATGGGTAGTGGGCATTACACTGCACATATCAAGCTTCTTGATGAGAACAGATGGTATAGTTTTGATGACAGTCATATATCACCCATAAATGAAGAAGATGTGAAGTCAGCTGCAGCATATGTACTGTTTTATCGCCGGGTAAAGAGTGAAGATTCCTTTGTTAGCAATGGAGTCCTATCCTGTGGAGGTGACAACAAAGTTGCCTCAGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

932

Amino Acids

104.66

Weight (kDa)

5.88

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUSP PF06337 32 - 122 1.8e-20 DUSP domain
Ubiquitin_UBP8 PF25242 141 - 192 4.4e-10 UBP8-like, ubiquitin-like domain
UCH PF00443 304 - 905 5e-78 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 754 - 887 6.7e-07 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2436
AccB1I GGYRCC 3 cut(s) 433, 1093, 2326
AccB7I CCANNNNNTGG 1 cut(s) 2215
AccBSI CCGCTC 1 cut(s) 2365
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 1047
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 9 cut(s) 5, 299, 444, 1047, 1081, 1955, 2004, 2266, 2365
AclWI GGATC 4 cut(s) 712, 1412, 1552, 1926
AcoI YGGCCR 1 cut(s) 1780
AcuI CTGAAG 4 cut(s) 825, 1724, 2057, 2352
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 8 cut(s) 664, 886, 1430, 1996, 2288, 2345, 2441, 2706
AfiI CCNNNNNNNGG 7 cut(s) 123, 443, 659, 1538, 1759, 2215, 2359
AgsI TTSAA 6 cut(s) 192, 202, 401, 1712, 2019, 2300
AhlI ACTAGT 2 cut(s) 1772, 2161
AjnI CCWGG 3 cut(s) 353, 624, 1560
Alw26I GTCTC 5 cut(s) 178, 422, 661, 1408, 2073
AlwI GGATC 4 cut(s) 712, 1412, 1552, 1926
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 7 cut(s) 206, 277, 341, 445, 1280, 1360, 1780
ApeKI GCWGC 6 cut(s) 71, 722, 1447, 1697, 2693, 2696
ArsI GACNNNNNNTTYG 2 cut(s) 2400, 2432
AseI ATTAAT 1 cut(s) 1658
Asp700I GAANNNNTTC 1 cut(s) 2304
AspA2I CCTAGG 1 cut(s) 925
AspLEI GCGC 1 cut(s) 1047
AspS9I GGNCC 6 cut(s) 341, 374, 622, 643, 1762, 2246
AsuC2I CCSGG 4 cut(s) 527, 1098, 1550, 2720
AsuHPI GGTGA 5 cut(s) 1061, 1997, 2026, 2655, 2783
AsuNHI GCTAGC 2 cut(s) 1054, 1577
AvaII GGWCC 5 cut(s) 374, 622, 643, 1762, 2246
AvrII CCTAGG 1 cut(s) 925
BaeGI GKGCMC 1 cut(s) 1096
BaeI ACNNNNGTAYC 2 cut(s) 670, 703
BalI TGGCCA 1 cut(s) 1782
BanI GGYRCC 3 cut(s) 433, 1093, 2326
BarI GAAGNNNNNNTAC 2 cut(s) 2292, 2324
BbsI GAAGAC 2 cut(s) 1208, 1656
BbvI GCAGC 6 cut(s) 58, 709, 1459, 1684, 2680, 2708
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 2540, 2574
BciT130I CCWGG 3 cut(s) 355, 626, 1562
BciVI GTATCC 3 cut(s) 256, 671, 850
BclI TGATCA 1 cut(s) 1687
BcnI CCSGG 4 cut(s) 527, 1098, 1550, 2720
BcoDI GTCTC 5 cut(s) 178, 422, 661, 1408, 2073
BcuI ACTAGT 2 cut(s) 1772, 2161
BfaI CTAG 9 cut(s) 926, 1055, 1061, 1208, 1461, 1578, 1773, 2162, 2387
BfmI CTRYAG 2 cut(s) 1445, 2694
BfuAI ACCTGC 1 cut(s) 2436
BfuI GTATCC 3 cut(s) 256, 671, 850
BglII AGATCT 3 cut(s) 1225, 1943, 2389
BisI GCNGC 9 cut(s) 72, 445, 723, 1448, 1698, 1956, 2366, 2694, 2697
BlnI CCTAGG 1 cut(s) 925
BlsI GCNGC 9 cut(s) 73, 446, 724, 1449, 1699, 1957, 2367, 2695, 2698
Bme1390I CCNGG 7 cut(s) 355, 527, 626, 1098, 1550, 1562, 2720
Bme18I GGWCC 5 cut(s) 374, 622, 643, 1762, 2246
BmgT120I GGNCC 6 cut(s) 341, 374, 622, 643, 1762, 2246
BmiI GGNNCC 4 cut(s) 314, 435, 1095, 2328
BmrFI CCNGG 7 cut(s) 355, 527, 626, 1098, 1550, 1562, 2720
BmrI ACTGGG 3 cut(s) 921, 1033, 2347
BmsI GCATC 5 cut(s) 595, 803, 1258, 1967, 2156
BmtI GCTAGC 2 cut(s) 1058, 1581
BmuI ACTGGG 3 cut(s) 921, 1033, 2347
BpiI GAAGAC 2 cut(s) 1208, 1656
BpmI CTGGAG 1 cut(s) 789
BpuMI CCSGG 4 cut(s) 527, 1098, 1550, 2720
BsaAI YACGTR 1 cut(s) 2312
BsaBI GATNNNNATC 5 cut(s) 1008, 1230, 1686, 1689, 2199
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 661
BsaJI CCNNGG 4 cut(s) 353, 925, 1357, 1765
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 7 cut(s) 123, 443, 659, 1538, 1759, 2215, 2359
Bse1I ACTGG 9 cut(s) 316, 916, 1028, 1109, 2037, 2048, 2328, 2353, 2469
Bse3DI GCAATG 8 cut(s) 60, 1320, 1436, 1498, 1579, 2135, 2514, 2755
Bse8I GATNNNNATC 5 cut(s) 1008, 1230, 1686, 1689, 2199
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 3 cut(s) 355, 626, 1562
BseDI CCNNGG 4 cut(s) 353, 925, 1357, 1765
BseGI GGATG 4 cut(s) 40, 1802, 2089, 2418
BseJI GATNNNNATC 5 cut(s) 1008, 1230, 1686, 1689, 2199
BseLI CCNNNNNNNGG 7 cut(s) 123, 443, 659, 1538, 1759, 2215, 2359
BseMI GCAATG 8 cut(s) 60, 1320, 1436, 1498, 1579, 2135, 2514, 2755
BseMII CTCAG 5 cut(s) 189, 741, 1199, 1899, 2124
BseNI ACTGG 9 cut(s) 316, 916, 1028, 1109, 2037, 2048, 2328, 2353, 2469
BseRI GAGGAG 2 cut(s) 40, 1107
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 6 cut(s) 58, 709, 1459, 1684, 2680, 2708
BsgI GTGCAG 2 cut(s) 40, 2589
Bsh1236I CGCG 1 cut(s) 1047
BshFI GGCC 7 cut(s) 208, 279, 343, 447, 1282, 1362, 1782
BshNI GGYRCC 3 cut(s) 433, 1093, 2326
BsiSI CCGG 5 cut(s) 32, 527, 1098, 1549, 2719
BslFI GGGAC 4 cut(s) 883, 1554, 1565, 2334
BslI CCNNNNNNNGG 7 cut(s) 123, 443, 659, 1538, 1759, 2215, 2359
BsmAI GTCTC 5 cut(s) 178, 422, 661, 1408, 2073
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 4 cut(s) 883, 1554, 1565, 2334
BsmI GAATGC 1 cut(s) 1064
BsnI GGCC 7 cut(s) 208, 279, 343, 447, 1282, 1362, 1782
Bso31I GGTCTC 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 1096
Bsp13I TCCGGA 1 cut(s) 31
Bsp1407I TGTACA 1 cut(s) 2286
BspACI CCGC 9 cut(s) 5, 299, 444, 1047, 1081, 1955, 2004, 2266, 2365
BspANI GGCC 7 cut(s) 208, 279, 343, 447, 1282, 1362, 1782
BspCNI CTCAG 5 cut(s) 188, 740, 1198, 1900, 2123
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 1 cut(s) 1047
BspHI TCATGA 3 cut(s) 576, 1219, 2491
BspLI GGNNCC 4 cut(s) 314, 435, 1095, 2328
BspMAI CTGCAG 2 cut(s) 1449, 2698
BspMI ACCTGC 1 cut(s) 2436
BspOI GCTAGC 2 cut(s) 1058, 1581
BspPI GGATC 4 cut(s) 712, 1412, 1552, 1926
BspQI GCTCTTC 1 cut(s) 493
BspT107I GGYRCC 3 cut(s) 433, 1093, 2326
BspTNI GGTCTC 1 cut(s) 661
BsrBI CCGCTC 1 cut(s) 2365
BsrDI GCAATG 8 cut(s) 60, 1320, 1436, 1498, 1579, 2135, 2514, 2755
BsrGI TGTACA 1 cut(s) 2286
BsrI ACTGG 9 cut(s) 316, 916, 1028, 1109, 2037, 2048, 2328, 2353, 2469
BssECI CCNNGG 4 cut(s) 353, 925, 1357, 1765
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 3 cut(s) 925, 1357, 1765
Bst2UI CCWGG 3 cut(s) 355, 626, 1562
Bst6I CTCTTC 5 cut(s) 33, 493, 1824, 2076, 2115
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 1946
BstAUI TGTACA 1 cut(s) 2286
BstBAI YACGTR 1 cut(s) 2312
BstC8I GCNNGC 8 cut(s) 210, 563, 784, 819, 1056, 1579, 2098, 2266
BstF5I GGATG 4 cut(s) 40, 1802, 2089, 2418
BstFNI CGCG 1 cut(s) 1047
BstHHI GCGC 1 cut(s) 1047
BstMAI GTCTC 5 cut(s) 178, 422, 661, 1408, 2073
BstMWI GCNNNNNNNGC 9 cut(s) 71, 77, 433, 1051, 1148, 1447, 1578, 1946, 1955
BstNI CCWGG 3 cut(s) 355, 626, 1562
BstNSI RCATGY 3 cut(s) 572, 1995, 2100
BstSCI CCNGG 7 cut(s) 353, 525, 624, 1096, 1548, 1560, 2718
BstSFI CTRYAG 2 cut(s) 1445, 2694
BstSLI GKGCMC 1 cut(s) 1096
BstUI CGCG 1 cut(s) 1047
BstV1I GCAGC 6 cut(s) 58, 709, 1459, 1684, 2680, 2708
BstV2I GAAGAC 2 cut(s) 1208, 1656
BstX2I RGATCY 4 cut(s) 704, 1225, 1943, 2389
BstXI CCANNNNNNTGG 1 cut(s) 1163
BstYI RGATCY 4 cut(s) 704, 1225, 1943, 2389
BsuI GTATCC 3 cut(s) 256, 671, 850
BsuRI GGCC 7 cut(s) 208, 279, 343, 447, 1282, 1362, 1782
BtsCI GGATG 4 cut(s) 40, 1802, 2089, 2418
BtsI GCAGTG 1 cut(s) 2601
BveI ACCTGC 1 cut(s) 2436
Cac8I GCNNGC 8 cut(s) 210, 563, 784, 819, 1056, 1579, 2098, 2266
CciI TCATGA 3 cut(s) 576, 1219, 2491
CfoI GCGC 1 cut(s) 1047
Cfr13I GGNCC 6 cut(s) 341, 374, 622, 643, 1762, 2246
CseI GACGC 3 cut(s) 254, 404, 567
Csp6I GTAC 8 cut(s) 663, 885, 1429, 1995, 2287, 2344, 2440, 2705
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CviQI GTAC 8 cut(s) 663, 885, 1429, 1995, 2287, 2344, 2440, 2705
DraI TTTAAA 1 cut(s) 1129
EaeI YGGCCR 1 cut(s) 1780
Eam1104I CTCTTC 5 cut(s) 33, 493, 1824, 2076, 2115
EarI CTCTTC 5 cut(s) 33, 493, 1824, 2076, 2115
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 925, 1357, 1765
Eco147I AGGCCT 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 661
Eco32I GATATC 2 cut(s) 237, 2032
Eco47I GGWCC 5 cut(s) 374, 622, 643, 1762, 2246
Eco57I CTGAAG 4 cut(s) 825, 1724, 2057, 2352
EcoO109I RGGNCCY 2 cut(s) 374, 643
EcoRII CCWGG 3 cut(s) 353, 624, 1560
EcoRV GATATC 2 cut(s) 237, 2032
EcoT14I CCWWGG 3 cut(s) 925, 1357, 1765
EcoT22I ATGCAT 2 cut(s) 542, 2102
ErhI CCWWGG 3 cut(s) 925, 1357, 1765
Esp3I CGTCTC 1 cut(s) 422
FalI AAGNNNNNCTT 4 cut(s) 740, 772, 823, 855
FaqI GGGAC 4 cut(s) 883, 1554, 1565, 2334
FauI CCCGC 2 cut(s) 306, 2273
FauNDI CATATG 1 cut(s) 2701
FbaI TGATCA 1 cut(s) 1687
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 9 cut(s) 72, 445, 723, 1448, 1698, 1956, 2366, 2694, 2697
FokI GGATG 4 cut(s) 47, 1809, 2096, 2405
Fsp4HI GCNGC 9 cut(s) 72, 445, 723, 1448, 1698, 1956, 2366, 2694, 2697
FspBI CTAG 9 cut(s) 926, 1055, 1061, 1208, 1461, 1578, 1773, 2162, 2387
GlaI GCGC 1 cut(s) 1046
GluI GCNGC 9 cut(s) 72, 445, 723, 1448, 1698, 1956, 2366, 2694, 2697
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 7 cut(s) 208, 279, 343, 447, 1282, 1362, 1782
HapII CCGG 5 cut(s) 32, 527, 1098, 1549, 2719
HgaI GACGC 3 cut(s) 254, 404, 567
HhaI GCGC 1 cut(s) 1047
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 1 cut(s) 1045
HinP1I GCGC 1 cut(s) 1045
HincII GTYRAC 1 cut(s) 2479
HindII GTYRAC 1 cut(s) 2479
HindIII AAGCTT 4 cut(s) 754, 1085, 2186, 2615
HpaII CCGG 5 cut(s) 32, 527, 1098, 1549, 2719
HphI GGTGA 5 cut(s) 1061, 1997, 2026, 2655, 2783
Hpy166II GTNNAC 4 cut(s) 151, 406, 2289, 2479
Hpy188I TCNGA 5 cut(s) 178, 229, 241, 1230, 2791
Hpy8I GTNNAC 4 cut(s) 151, 406, 2289, 2479
Hpy99I CGWCG 4 cut(s) 245, 248, 1349, 1758
HpyAV CCTTC 6 cut(s) 112, 269, 387, 753, 1432, 2151
HpyCH4IV ACGT 2 cut(s) 1543, 2311
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 77, 433, 1051, 1148, 1447, 1578, 1946, 1955
HpySE526I ACGT 2 cut(s) 1543, 2311
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 1 cut(s) 1045
Kpn2I TCCGGA 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 1687
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 3 cut(s) 300, 1120, 2362
Lsp1109I GCAGC 6 cut(s) 58, 709, 1459, 1684, 2680, 2708
LweI GCATC 5 cut(s) 595, 803, 1258, 1967, 2156
MaeI CTAG 9 cut(s) 926, 1055, 1061, 1208, 1461, 1578, 1773, 2162, 2387
MaeII ACGT 2 cut(s) 1543, 2311
MbiI CCGCTC 1 cut(s) 2365
MfeI CAATTG 2 cut(s) 422, 480
MflI RGATCY 4 cut(s) 704, 1225, 1943, 2389
MhlI GDGCHC 1 cut(s) 1096
MlsI TGGCCA 1 cut(s) 1782
MluCI AATT 8 cut(s) 223, 422, 480, 851, 1073, 1157, 2014, 2509
MluNI TGGCCA 1 cut(s) 1782
MlyI GAGTC 3 cut(s) 37, 369, 2763
MmeI TCCRAC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 1782
Mph1103I ATGCAT 2 cut(s) 542, 2102
MroI TCCGGA 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 2304
MscI TGGCCA 1 cut(s) 1782
MseI TTAA 3 cut(s) 1128, 1658, 2238
MslI CAYNNNNRTG 2 cut(s) 389, 1795
Msp20I TGGCCA 1 cut(s) 1782
MspA1I CMGCKG 1 cut(s) 2693
MspI CCGG 5 cut(s) 32, 527, 1098, 1549, 2719
MspR9I CCNGG 7 cut(s) 355, 527, 626, 1098, 1550, 1562, 2720
MunI CAATTG 2 cut(s) 422, 480
Mva1269I GAATGC 1 cut(s) 1064
MvaI CCWGG 3 cut(s) 355, 626, 1562
MvnI CGCG 1 cut(s) 1047
MwoI GCNNNNNNNGC 9 cut(s) 71, 77, 433, 1051, 1148, 1447, 1578, 1946, 1955
NciI CCSGG 4 cut(s) 527, 1098, 1550, 2720
NdeI CATATG 1 cut(s) 2701
NheI GCTAGC 2 cut(s) 1054, 1577
NlaIV GGNNCC 4 cut(s) 314, 435, 1095, 2328
NmuCI GTSAC 3 cut(s) 281, 2178, 2771
NsiI ATGCAT 2 cut(s) 542, 2102
NspI RCATGY 3 cut(s) 572, 1995, 2100
PaeI GCATGC 1 cut(s) 2100
PagI TCATGA 3 cut(s) 576, 1219, 2491
PceI AGGCCT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 493
PctI GAATGC 1 cut(s) 1064
PdmI GAANNNNTTC 1 cut(s) 2304
PfeI GAWTC 7 cut(s) 188, 1181, 1231, 1334, 1633, 2000, 2735
PflMI CCANNNNNTGG 1 cut(s) 2215
PkrI GCNGC 9 cut(s) 73, 446, 724, 1449, 1699, 1957, 2367, 2695, 2698
PleI GAGTC 3 cut(s) 36, 368, 2762
PpsI GAGTC 3 cut(s) 36, 368, 2762
Ppu21I YACGTR 1 cut(s) 2312
PpuMI RGGWCCY 2 cut(s) 374, 643
PshBI ATTAAT 1 cut(s) 1658
Psp5II RGGWCCY 2 cut(s) 374, 643
Psp6I CCWGG 3 cut(s) 353, 624, 1560
PspGI CCWGG 3 cut(s) 353, 624, 1560
PspN4I GGNNCC 4 cut(s) 314, 435, 1095, 2328
PspPI GGNCC 6 cut(s) 341, 374, 622, 643, 1762, 2246
PspPPI RGGWCCY 2 cut(s) 374, 643
PsrI GAACNNNNNNTAC 2 cut(s) 877, 909
PstI CTGCAG 2 cut(s) 1449, 2698
PsuI RGATCY 4 cut(s) 704, 1225, 1943, 2389
PvuII CAGCTG 1 cut(s) 2693
RsaI GTAC 8 cut(s) 664, 886, 1430, 1996, 2288, 2345, 2441, 2706
RsaNI GTAC 8 cut(s) 663, 885, 1429, 1995, 2287, 2344, 2440, 2705
RseI CAYNNNNRTG 2 cut(s) 389, 1795
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 3 cut(s) 1128, 1658, 2238
SatI GCNGC 9 cut(s) 72, 445, 723, 1448, 1698, 1956, 2366, 2694, 2697
Sau96I GGNCC 6 cut(s) 341, 374, 622, 643, 1762, 2246
SchI GAGTC 3 cut(s) 37, 369, 2763
ScrFI CCNGG 7 cut(s) 355, 527, 626, 1098, 1550, 1562, 2720
SduI GDGCHC 1 cut(s) 1096
SfaNI GCATC 5 cut(s) 595, 803, 1258, 1967, 2156
SfcI CTRYAG 2 cut(s) 1445, 2694
SinI GGWCC 5 cut(s) 374, 622, 643, 1762, 2246
SmiMI CAYNNNNRTG 2 cut(s) 389, 1795
SpeI ACTAGT 2 cut(s) 1772, 2161
SphI GCATGC 1 cut(s) 2100
Sse9I AATT 8 cut(s) 223, 422, 480, 851, 1073, 1157, 2014, 2509
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 9 cut(s) 5, 299, 444, 1047, 1081, 1955, 2004, 2266, 2365
SspI AATATT 2 cut(s) 1307, 1662
SspMI CTAG 9 cut(s) 926, 1055, 1061, 1208, 1461, 1578, 1773, 2162, 2387
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 7 cut(s) 353, 525, 624, 1096, 1548, 1560, 2718
StyI CCWWGG 3 cut(s) 925, 1357, 1765
TaiI ACGT 2 cut(s) 1546, 2314
TaqI TCGA 5 cut(s) 14, 452, 761, 1120, 1347
TaqII GACCGA 2 cut(s) 596, 685
TasI AATT 8 cut(s) 223, 422, 480, 851, 1073, 1157, 2014, 2509
TatI WGTACW 4 cut(s) 884, 1994, 2286, 2704
TauI GCSGC 3 cut(s) 447, 1958, 2368
TfiI GAWTC 7 cut(s) 188, 1181, 1231, 1334, 1633, 2000, 2735
Tru1I TTAA 3 cut(s) 1128, 1658, 2238
Tru9I TTAA 3 cut(s) 1128, 1658, 2238
TseFI GTSAC 3 cut(s) 281, 2178, 2771
TseI GCWGC 6 cut(s) 71, 722, 1447, 1697, 2693, 2696
Tsp45I GTSAC 3 cut(s) 281, 2178, 2771
Van91I CCANNNNNTGG 1 cut(s) 2215
VpaK11BI GGWCC 5 cut(s) 374, 622, 643, 1762, 2246
VspI ATTAAT 1 cut(s) 1658
XceI RCATGY 3 cut(s) 572, 1995, 2100
XmaJI CCTAGG 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 2304
XspI CTAG 9 cut(s) 926, 1055, 1061, 1208, 1461, 1578, 1773, 2162, 2387
Zsp2I ATGCAT 2 cut(s) 542, 2102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.