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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 764 |
| AccBSI | CCGCTC | 1 cut(s) | 1113 |
| AccI | GTMKAC | 3 cut(s) | 228, 494, 1276 |
| AciI | CCGC | 6 cut(s) | 87, 461, 849, 878, 1091, 1113 |
| AcsI | RAATTY | 3 cut(s) | 854, 973, 1132 |
| AcyI | GRCGYC | 3 cut(s) | 567, 761, 1201 |
| AfaI | GTAC | 1 cut(s) | 507 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 178, 532 |
| AflIII | ACRYGT | 1 cut(s) | 310 |
| AgsI | TTSAA | 4 cut(s) | 109, 475, 953, 1132 |
| AjnI | CCWGG | 1 cut(s) | 1258 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 780, 812 |
| AluBI | AGCT | 3 cut(s) | 382, 717, 998 |
| AluI | AGCT | 3 cut(s) | 382, 717, 998 |
| AoxI | GGCC | 4 cut(s) | 33, 169, 927, 1066 |
| ApeKI | GCWGC | 3 cut(s) | 872, 875, 1017 |
| ApoI | RAATTY | 3 cut(s) | 854, 973, 1132 |
| AseI | ATTAAT | 1 cut(s) | 176 |
| AspS9I | GGNCC | 3 cut(s) | 170, 927, 1229 |
| AsuC2I | CCSGG | 2 cut(s) | 206, 334 |
| AsuHPI | GGTGA | 2 cut(s) | 1105, 1274 |
| AsuII | TTCGAA | 1 cut(s) | 306 |
| AvaII | GGWCC | 1 cut(s) | 1229 |
| BaeGI | GKGCMC | 1 cut(s) | 518 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1053, 1085 |
| BauI | CACGAG | 1 cut(s) | 339 |
| BbsI | GAAGAC | 1 cut(s) | 941 |
| BbvI | GCAGC | 3 cut(s) | 884, 887, 1029 |
| BccI | CCATC | 5 cut(s) | 178, 310, 617, 976, 1220 |
| BceAI | ACGGC | 1 cut(s) | 1091 |
| BciT130I | CCWGG | 1 cut(s) | 1260 |
| BciVI | GTATCC | 2 cut(s) | 1174, 1266 |
| BcnI | CCSGG | 2 cut(s) | 206, 334 |
| BfaI | CTAG | 1 cut(s) | 500 |
| BfuI | GTATCC | 2 cut(s) | 1174, 1266 |
| BisI | GCNGC | 4 cut(s) | 849, 873, 876, 1018 |
| BlsI | GCNGC | 4 cut(s) | 850, 874, 877, 1019 |
| Bme1390I | CCNGG | 3 cut(s) | 206, 334, 1260 |
| Bme18I | GGWCC | 1 cut(s) | 1229 |
| BmgT120I | GGNCC | 3 cut(s) | 170, 927, 1229 |
| BmiI | GGNNCC | 1 cut(s) | 548 |
| BmrFI | CCNGG | 3 cut(s) | 206, 334, 1260 |
| BmrI | ACTGGG | 1 cut(s) | 740 |
| BmsI | GCATC | 5 cut(s) | 179, 245, 605, 659, 691 |
| BmuI | ACTGGG | 1 cut(s) | 740 |
| BoxI | GACNNNNGTC | 1 cut(s) | 213 |
| BpiI | GAAGAC | 1 cut(s) | 941 |
| Bpu14I | TTCGAA | 1 cut(s) | 306 |
| BpuMI | CCSGG | 2 cut(s) | 206, 334 |
| BsaBI | GATNNNNATC | 1 cut(s) | 986 |
| BsaHI | GRCGYC | 3 cut(s) | 567, 761, 1201 |
| BsaWI | WCCGGW | 1 cut(s) | 648 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 57, 87 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 178, 532 |
| Bse1I | ACTGG | 2 cut(s) | 658, 746 |
| Bse8I | GATNNNNATC | 1 cut(s) | 986 |
| BseBI | CCWGG | 1 cut(s) | 1260 |
| BseGI | GGATG | 6 cut(s) | 194, 244, 469, 572, 674, 919 |
| BseJI | GATNNNNATC | 1 cut(s) | 986 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 178, 532 |
| BseNI | ACTGG | 2 cut(s) | 658, 746 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| BseSI | GKGCMC | 1 cut(s) | 518 |
| BseXI | GCAGC | 3 cut(s) | 884, 887, 1029 |
| BseYI | CCCAGC | 2 cut(s) | 382, 518 |
| BshFI | GGCC | 4 cut(s) | 35, 171, 929, 1068 |
| BsiSI | CCGG | 4 cut(s) | 36, 205, 333, 649 |
| BslFI | GGGAC | 2 cut(s) | 221, 349 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 178, 532 |
| BsmFI | GGGAC | 2 cut(s) | 221, 349 |
| BsnI | GGCC | 4 cut(s) | 35, 171, 929, 1068 |
| Bsp119I | TTCGAA | 1 cut(s) | 306 |
| Bsp1286I | GDGCHC | 1 cut(s) | 518 |
| BspACI | CCGC | 6 cut(s) | 87, 461, 849, 878, 1091, 1113 |
| BspANI | GGCC | 4 cut(s) | 35, 171, 929, 1068 |
| BspLI | GGNNCC | 1 cut(s) | 548 |
| BspT104I | TTCGAA | 1 cut(s) | 306 |
| BsrBI | CCGCTC | 1 cut(s) | 1113 |
| BsrI | ACTGG | 2 cut(s) | 658, 746 |
| BssNAI | GTATAC | 2 cut(s) | 495, 1277 |
| BssNI | GRCGYC | 3 cut(s) | 567, 761, 1201 |
| BssSI | CACGAG | 1 cut(s) | 339 |
| Bst1107I | GTATAC | 2 cut(s) | 495, 1277 |
| Bst2BI | CACGAG | 1 cut(s) | 339 |
| Bst2UI | CCWGG | 1 cut(s) | 1260 |
| Bst4CI | ACNGT | 6 cut(s) | 301, 428, 510, 907, 1169, 1281 |
| Bst6I | CTCTTC | 1 cut(s) | 1260 |
| BstACI | GRCGYC | 3 cut(s) | 567, 761, 1201 |
| BstBI | TTCGAA | 1 cut(s) | 306 |
| BstF5I | GGATG | 6 cut(s) | 194, 244, 469, 572, 674, 919 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstNI | CCWGG | 1 cut(s) | 1260 |
| BstNSI | RCATGY | 1 cut(s) | 1024 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 213 |
| BstSCI | CCNGG | 3 cut(s) | 204, 332, 1258 |
| BstSLI | GKGCMC | 1 cut(s) | 518 |
| BstV1I | GCAGC | 3 cut(s) | 884, 887, 1029 |
| BstV2I | GAAGAC | 1 cut(s) | 941 |
| BstZ17I | GTATAC | 2 cut(s) | 495, 1277 |
| BsuI | GTATCC | 2 cut(s) | 1174, 1266 |
| BsuRI | GGCC | 4 cut(s) | 35, 171, 929, 1068 |
| BtsCI | GGATG | 6 cut(s) | 194, 244, 469, 572, 674, 919 |
| BtsIMutI | CAGTG | 3 cut(s) | 297, 984, 1026 |
| Cfr13I | GGNCC | 3 cut(s) | 170, 927, 1229 |
| CseI | GACGC | 2 cut(s) | 575, 1209 |
| Csp6I | GTAC | 1 cut(s) | 506 |
| CviQI | GTAC | 1 cut(s) | 506 |
| Eam1104I | CTCTTC | 1 cut(s) | 1260 |
| EarI | CTCTTC | 1 cut(s) | 1260 |
| EciI | GGCGGA | 1 cut(s) | 476 |
| Eco32I | GATATC | 2 cut(s) | 988, 1044 |
| Eco47I | GGWCC | 1 cut(s) | 1229 |
| EcoRII | CCWGG | 1 cut(s) | 1258 |
| EcoRV | GATATC | 2 cut(s) | 988, 1044 |
| EcoT22I | ATGCAT | 3 cut(s) | 194, 674, 936 |
| FaqI | GGGAC | 2 cut(s) | 221, 349 |
| FblI | GTMKAC | 3 cut(s) | 228, 494, 1276 |
| Fnu4HI | GCNGC | 4 cut(s) | 849, 873, 876, 1018 |
| FokI | GGATG | 6 cut(s) | 201, 251, 476, 559, 681, 926 |
| Fsp4HI | GCNGC | 4 cut(s) | 849, 873, 876, 1018 |
| FspBI | CTAG | 1 cut(s) | 500 |
| GluI | GCNGC | 4 cut(s) | 849, 873, 876, 1018 |
| GsaI | CCCAGC | 2 cut(s) | 386, 522 |
| HaeIII | GGCC | 4 cut(s) | 35, 171, 929, 1068 |
| HapII | CCGG | 4 cut(s) | 36, 205, 333, 649 |
| HgaI | GACGC | 2 cut(s) | 575, 1209 |
| Hin1I | GRCGYC | 3 cut(s) | 567, 761, 1201 |
| HincII | GTYRAC | 2 cut(s) | 229, 538 |
| HindII | GTYRAC | 2 cut(s) | 229, 538 |
| HinfI | GANTC | 2 cut(s) | 165, 268 |
| HpaII | CCGG | 4 cut(s) | 36, 205, 333, 649 |
| HphI | GGTGA | 2 cut(s) | 1105, 1274 |
| Hpy166II | GTNNAC | 6 cut(s) | 229, 495, 538, 1026, 1156, 1277 |
| Hpy188I | TCNGA | 3 cut(s) | 267, 611, 913 |
| Hpy8I | GTNNAC | 6 cut(s) | 229, 495, 538, 1026, 1156, 1277 |
| Hpy99I | CGWCG | 4 cut(s) | 1077, 1169, 1200, 1203 |
| HpyAV | CCTTC | 4 cut(s) | 18, 370, 381, 797 |
| HpyCH4III | ACNGT | 6 cut(s) | 301, 428, 510, 907, 1169, 1281 |
| HpyCH4IV | ACGT | 2 cut(s) | 310, 761 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpySE526I | ACGT | 2 cut(s) | 310, 761 |
| Hsp92I | GRCGYC | 3 cut(s) | 567, 761, 1201 |
| LmnI | GCTCC | 2 cut(s) | 379, 1110 |
| Lsp1109I | GCAGC | 3 cut(s) | 884, 887, 1029 |
| LweI | GCATC | 5 cut(s) | 179, 245, 605, 659, 691 |
| MaeI | CTAG | 1 cut(s) | 500 |
| MaeII | ACGT | 2 cut(s) | 310, 761 |
| MaeIII | GTNAC | 4 cut(s) | 92, 563, 656, 901 |
| MbiI | CCGCTC | 1 cut(s) | 1113 |
| MboII | GAAGA | 4 cut(s) | 80, 422, 941, 1277 |
| MhlI | GDGCHC | 1 cut(s) | 518 |
| MluCI | AATT | 8 cut(s) | 110, 589, 686, 795, 854, 889, 973, 1132 |
| MmeI | TCCRAC | 3 cut(s) | 9, 688, 891 |
| MnlI | CCTC | 8 cut(s) | 25, 448, 451, 537, 580, 918, 952, 1261 |
| Mph1103I | ATGCAT | 3 cut(s) | 194, 674, 936 |
| MseI | TTAA | 6 cut(s) | 47, 81, 113, 176, 828, 971 |
| MslI | CAYNNNNRTG | 1 cut(s) | 601 |
| MspA1I | CMGCKG | 2 cut(s) | 851, 878 |
| MspI | CCGG | 4 cut(s) | 36, 205, 333, 649 |
| MspR9I | CCNGG | 3 cut(s) | 206, 334, 1260 |
| MvaI | CCWGG | 1 cut(s) | 1260 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NciI | CCSGG | 2 cut(s) | 206, 334 |
| NlaIV | GGNNCC | 1 cut(s) | 548 |
| NmuCI | GTSAC | 2 cut(s) | 563, 901 |
| NsiI | ATGCAT | 3 cut(s) | 194, 674, 936 |
| NspI | RCATGY | 1 cut(s) | 1024 |
| NspV | TTCGAA | 1 cut(s) | 306 |
| PfeI | GAWTC | 2 cut(s) | 165, 268 |
| PflFI | GACNNNGTC | 1 cut(s) | 907 |
| PkrI | GCNGC | 4 cut(s) | 850, 874, 877, 1019 |
| PshAI | GACNNNNGTC | 1 cut(s) | 213 |
| PshBI | ATTAAT | 1 cut(s) | 176 |
| Psp6I | CCWGG | 1 cut(s) | 1258 |
| PspFI | CCCAGC | 2 cut(s) | 382, 518 |
| PspGI | CCWGG | 1 cut(s) | 1258 |
| PspN4I | GGNNCC | 1 cut(s) | 548 |
| PspPI | GGNCC | 3 cut(s) | 170, 927, 1229 |
| PsyI | GACNNNGTC | 1 cut(s) | 907 |
| RsaI | GTAC | 1 cut(s) | 507 |
| RsaNI | GTAC | 1 cut(s) | 506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 601 |
| SalI | GTCGAC | 1 cut(s) | 227 |
| SaqAI | TTAA | 6 cut(s) | 47, 81, 113, 176, 828, 971 |
| SatI | GCNGC | 4 cut(s) | 849, 873, 876, 1018 |
| Sau96I | GGNCC | 3 cut(s) | 170, 927, 1229 |
| ScrFI | CCNGG | 3 cut(s) | 206, 334, 1260 |
| SduI | GDGCHC | 1 cut(s) | 518 |
| SfaNI | GCATC | 5 cut(s) | 179, 245, 605, 659, 691 |
| SfuI | TTCGAA | 1 cut(s) | 306 |
| SinI | GGWCC | 1 cut(s) | 1229 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 601 |
| Sse9I | AATT | 8 cut(s) | 110, 589, 686, 795, 854, 889, 973, 1132 |
| SsiI | CCGC | 6 cut(s) | 87, 461, 849, 878, 1091, 1113 |
| SspI | AATATT | 2 cut(s) | 841, 1218 |
| SspMI | CTAG | 1 cut(s) | 500 |
| StyD4I | CCNGG | 3 cut(s) | 204, 332, 1258 |
| TaaI | ACNGT | 6 cut(s) | 301, 428, 510, 907, 1169, 1281 |
| TaiI | ACGT | 2 cut(s) | 313, 764 |
| TaqI | TCGA | 4 cut(s) | 228, 306, 360, 1221 |
| TaqII | GACCGA | 1 cut(s) | 1073 |
| TasI | AATT | 8 cut(s) | 110, 589, 686, 795, 854, 889, 973, 1132 |
| TatI | WGTACW | 1 cut(s) | 505 |
| TauI | GCSGC | 1 cut(s) | 851 |
| TfiI | GAWTC | 2 cut(s) | 165, 268 |
| Tru1I | TTAA | 6 cut(s) | 47, 81, 113, 176, 828, 971 |
| Tru9I | TTAA | 6 cut(s) | 47, 81, 113, 176, 828, 971 |
| TscAI | CASTG | 3 cut(s) | 304, 984, 1033 |
| TseFI | GTSAC | 2 cut(s) | 563, 901 |
| TseI | GCWGC | 3 cut(s) | 872, 875, 1017 |
| Tsp45I | GTSAC | 2 cut(s) | 563, 901 |
| TspDTI | ATGAA | 6 cut(s) | 17, 389, 423, 446, 951, 1251 |
| TspGWI | ACGGA | 1 cut(s) | 34 |
| TspRI | CASTG | 3 cut(s) | 304, 984, 1033 |
| Tth111I | GACNNNGTC | 1 cut(s) | 907 |
| VpaK11BI | GGWCC | 1 cut(s) | 1229 |
| VspI | ATTAAT | 1 cut(s) | 176 |
| XapI | RAATTY | 3 cut(s) | 854, 973, 1132 |
| XceI | RCATGY | 1 cut(s) | 1024 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 753 |
| XmiI | GTMKAC | 3 cut(s) | 228, 494, 1276 |
| XspI | CTAG | 1 cut(s) | 500 |
| ZraI | GACGTC | 1 cut(s) | 762 |
| Zsp2I | ATGCAT | 3 cut(s) | 194, 674, 936 |