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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 156 |
| AclWI | GGATC | 1 cut(s) | 157 |
| AcsI | RAATTY | 1 cut(s) | 443 |
| AfaI | GTAC | 1 cut(s) | 35 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 111, 296 |
| AgsI | TTSAA | 2 cut(s) | 295, 331 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| AleI | CACNNNNGTG | 1 cut(s) | 215 |
| AluBI | AGCT | 1 cut(s) | 25 |
| AluI | AGCT | 1 cut(s) | 25 |
| Alw26I | GTCTC | 1 cut(s) | 250 |
| AlwI | GGATC | 1 cut(s) | 157 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 242 |
| ApoI | RAATTY | 1 cut(s) | 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 304 |
| AspS9I | GGNCC | 2 cut(s) | 239, 359 |
| AsuC2I | CCSGG | 1 cut(s) | 434 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AvaII | GGWCC | 2 cut(s) | 239, 359 |
| BaeGI | GKGCMC | 1 cut(s) | 212 |
| BanI | GGYRCC | 1 cut(s) | 156 |
| BccI | CCATC | 3 cut(s) | 74, 137, 251 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BcnI | CCSGG | 1 cut(s) | 434 |
| BcoDI | GTCTC | 1 cut(s) | 250 |
| Bme1390I | CCNGG | 2 cut(s) | 237, 434 |
| Bme18I | GGWCC | 2 cut(s) | 239, 359 |
| BmgT120I | GGNCC | 2 cut(s) | 239, 359 |
| BmiI | GGNNCC | 2 cut(s) | 158, 287 |
| BmrFI | CCNGG | 2 cut(s) | 237, 434 |
| BpuMI | CCSGG | 1 cut(s) | 434 |
| BsaJI | CCNNGG | 4 cut(s) | 110, 160, 249, 407 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 111, 296 |
| Bse1I | ACTGG | 1 cut(s) | 362 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 4 cut(s) | 110, 160, 249, 407 |
| BseGI | GGATG | 3 cut(s) | 259, 280, 378 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 111, 296 |
| BseMII | CTCAG | 1 cut(s) | 306 |
| BseNI | ACTGG | 1 cut(s) | 362 |
| BseSI | GKGCMC | 1 cut(s) | 212 |
| BshNI | GGYRCC | 1 cut(s) | 156 |
| BsiSI | CCGG | 1 cut(s) | 433 |
| BslFI | GGGAC | 2 cut(s) | 115, 240 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 111, 296 |
| BsmAI | GTCTC | 1 cut(s) | 250 |
| BsmFI | GGGAC | 2 cut(s) | 115, 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| Bsp143I | GATC | 1 cut(s) | 149 |
| Bsp19I | CCATGG | 2 cut(s) | 249, 407 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspLI | GGNNCC | 2 cut(s) | 158, 287 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BspT107I | GGYRCC | 1 cut(s) | 156 |
| BsrI | ACTGG | 1 cut(s) | 362 |
| BssECI | CCNNGG | 4 cut(s) | 110, 160, 249, 407 |
| BssMI | GATC | 1 cut(s) | 149 |
| BssT1I | CCWWGG | 3 cut(s) | 160, 249, 407 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 2 cut(s) | 111, 129 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstDEI | CTNAG | 2 cut(s) | 315, 383 |
| BstDSI | CCRYGG | 3 cut(s) | 110, 249, 407 |
| BstF5I | GGATG | 3 cut(s) | 259, 280, 378 |
| BstKTI | GATC | 1 cut(s) | 152 |
| BstMAI | GTCTC | 1 cut(s) | 250 |
| BstMBI | GATC | 1 cut(s) | 149 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstSCI | CCNGG | 2 cut(s) | 235, 432 |
| BstSLI | GKGCMC | 1 cut(s) | 212 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 369 |
| BtgI | CCRYGG | 3 cut(s) | 110, 249, 407 |
| BtsCI | GGATG | 3 cut(s) | 259, 280, 378 |
| BtsIMutI | CAGTG | 2 cut(s) | 125, 308 |
| CaiI | CAGNNNCTG | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 2 cut(s) | 239, 359 |
| CseI | GACGC | 1 cut(s) | 418 |
| CsiI | ACCWGGT | 1 cut(s) | 235 |
| Csp6I | GTAC | 1 cut(s) | 34 |
| CviAII | CATG | 3 cut(s) | 153, 250, 408 |
| CviJI | RGCY | 2 cut(s) | 25, 412 |
| CviKI_1 | RGCY | 2 cut(s) | 25, 412 |
| CviQI | GTAC | 1 cut(s) | 34 |
| DdeI | CTNAG | 2 cut(s) | 315, 383 |
| DpnI | GATC | 1 cut(s) | 151 |
| DpnII | GATC | 1 cut(s) | 149 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| Eco130I | CCWWGG | 3 cut(s) | 160, 249, 407 |
| Eco47I | GGWCC | 2 cut(s) | 239, 359 |
| EcoO109I | RGGNCCY | 1 cut(s) | 239 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| EcoT14I | CCWWGG | 3 cut(s) | 160, 249, 407 |
| ErhI | CCWWGG | 3 cut(s) | 160, 249, 407 |
| FaeI | CATG | 3 cut(s) | 156, 253, 411 |
| FaiI | YATR | 6 cut(s) | 136, 141, 154, 201, 251, 409 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 288, 320 |
| FaqI | GGGAC | 2 cut(s) | 115, 240 |
| FatI | CATG | 3 cut(s) | 152, 249, 407 |
| FokI | GGATG | 3 cut(s) | 266, 287, 385 |
| HapII | CCGG | 1 cut(s) | 433 |
| HgaI | GACGC | 1 cut(s) | 418 |
| Hin1II | CATG | 3 cut(s) | 156, 253, 411 |
| HpaII | CCGG | 1 cut(s) | 433 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 2 cut(s) | 125, 321 |
| Hpy8I | GTNNAC | 2 cut(s) | 125, 321 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyCH4III | ACNGT | 2 cut(s) | 111, 129 |
| HpyCH4IV | ACGT | 1 cut(s) | 121 |
| HpyF3I | CTNAG | 2 cut(s) | 315, 383 |
| HpySE526I | ACGT | 1 cut(s) | 121 |
| Hsp92II | CATG | 3 cut(s) | 156, 253, 411 |
| Kzo9I | GATC | 1 cut(s) | 149 |
| LmnI | GCTCC | 1 cut(s) | 164 |
| LpnPI | CCDG | 6 cut(s) | 33, 222, 249, 255, 375, 446 |
| MabI | ACCWGGT | 1 cut(s) | 235 |
| MaeII | ACGT | 1 cut(s) | 121 |
| MalI | GATC | 1 cut(s) | 151 |
| MboI | GATC | 1 cut(s) | 149 |
| MboII | GAAGA | 2 cut(s) | 197, 290 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MluCI | AATT | 3 cut(s) | 90, 437, 443 |
| MmeI | TCCRAC | 1 cut(s) | 247 |
| MnlI | CCTC | 5 cut(s) | 11, 140, 181, 199, 350 |
| MroXI | GAANNNNTTC | 1 cut(s) | 304 |
| MseI | TTAA | 2 cut(s) | 366, 440 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| MspI | CCGG | 1 cut(s) | 433 |
| MspR9I | CCNGG | 2 cut(s) | 237, 434 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| NciI | CCSGG | 1 cut(s) | 434 |
| NcoI | CCATGG | 2 cut(s) | 249, 407 |
| NdeII | GATC | 1 cut(s) | 149 |
| NlaIII | CATG | 3 cut(s) | 156, 253, 411 |
| NlaIV | GGNNCC | 2 cut(s) | 158, 287 |
| OliI | CACNNNNGTG | 1 cut(s) | 215 |
| PdmI | GAANNNNTTC | 1 cut(s) | 304 |
| PflFI | GACNNNGTC | 1 cut(s) | 402 |
| PfoI | TCCNGGA | 1 cut(s) | 432 |
| PpuMI | RGGWCCY | 1 cut(s) | 239 |
| Psp5II | RGGWCCY | 1 cut(s) | 239 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 2 cut(s) | 158, 287 |
| PspPI | GGNCC | 2 cut(s) | 239, 359 |
| PspPPI | RGGWCCY | 1 cut(s) | 239 |
| PstNI | CAGNNNCTG | 1 cut(s) | 242 |
| PsyI | GACNNNGTC | 1 cut(s) | 402 |
| RsaI | GTAC | 1 cut(s) | 35 |
| RsaNI | GTAC | 1 cut(s) | 34 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SaqAI | TTAA | 2 cut(s) | 366, 440 |
| Sau3AI | GATC | 1 cut(s) | 149 |
| Sau96I | GGNCC | 2 cut(s) | 239, 359 |
| ScrFI | CCNGG | 2 cut(s) | 237, 434 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SetI | ASST | 6 cut(s) | 27, 124, 200, 241, 287, 458 |
| SexAI | ACCWGGT | 1 cut(s) | 235 |
| SinI | GGWCC | 2 cut(s) | 239, 359 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| Sse9I | AATT | 3 cut(s) | 90, 437, 443 |
| StyD4I | CCNGG | 2 cut(s) | 235, 432 |
| StyI | CCWWGG | 3 cut(s) | 160, 249, 407 |
| TaaI | ACNGT | 2 cut(s) | 111, 129 |
| TaiI | ACGT | 1 cut(s) | 124 |
| TasI | AATT | 3 cut(s) | 90, 437, 443 |
| TatI | WGTACW | 1 cut(s) | 33 |
| Tru1I | TTAA | 2 cut(s) | 366, 440 |
| Tru9I | TTAA | 2 cut(s) | 366, 440 |
| TscAI | CASTG | 2 cut(s) | 132, 315 |
| TspDTI | ATGAA | 6 cut(s) | 17, 17, 56, 189, 291, 389 |
| TspRI | CASTG | 2 cut(s) | 132, 315 |
| Tth111I | GACNNNGTC | 1 cut(s) | 402 |
| VpaK11BI | GGWCC | 2 cut(s) | 239, 359 |
| XapI | RAATTY | 1 cut(s) | 443 |
| XmnI | GAANNNNTTC | 1 cut(s) | 304 |