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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 241, 361 |
| AcoI | YGGCCR | 2 cut(s) | 137, 141 |
| AcuI | CTGAAG | 1 cut(s) | 338 |
| AgeI | ACCGGT | 1 cut(s) | 38 |
| AgsI | TTSAA | 2 cut(s) | 134, 159 |
| AluBI | AGCT | 3 cut(s) | 96, 177, 284 |
| AluI | AGCT | 3 cut(s) | 96, 177, 284 |
| Alw26I | GTCTC | 1 cut(s) | 257 |
| AoxI | GGCC | 2 cut(s) | 137, 141 |
| AsiGI | ACCGGT | 1 cut(s) | 38 |
| AsuC2I | CCSGG | 1 cut(s) | 145 |
| AsuHPI | GGTGA | 3 cut(s) | 53, 77, 124 |
| BccI | CCATC | 1 cut(s) | 74 |
| BclI | TGATCA | 1 cut(s) | 220 |
| BcnI | CCSGG | 1 cut(s) | 145 |
| BcoDI | GTCTC | 1 cut(s) | 257 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 145 |
| Bme1390I | CCNGG | 1 cut(s) | 145 |
| BmrFI | CCNGG | 1 cut(s) | 145 |
| BmsI | GCATC | 2 cut(s) | 23, 289 |
| BpuMI | CCSGG | 1 cut(s) | 145 |
| BsaWI | WCCGGW | 1 cut(s) | 38 |
| Bse118I | RCCGGY | 2 cut(s) | 38, 139 |
| BseGI | GGATG | 2 cut(s) | 265, 301 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 2 cut(s) | 139, 143 |
| BshTI | ACCGGT | 1 cut(s) | 38 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiSI | CCGG | 3 cut(s) | 39, 140, 144 |
| BsmAI | GTCTC | 1 cut(s) | 257 |
| BsnI | GGCC | 2 cut(s) | 139, 143 |
| Bsp143I | GATC | 1 cut(s) | 220 |
| BspACI | CCGC | 2 cut(s) | 241, 361 |
| BspANI | GGCC | 2 cut(s) | 139, 143 |
| BspQI | GCTCTTC | 1 cut(s) | 314 |
| BsrFI | RCCGGY | 2 cut(s) | 38, 139 |
| BssAI | RCCGGY | 2 cut(s) | 38, 139 |
| BssMI | GATC | 1 cut(s) | 220 |
| Bst4CI | ACNGT | 2 cut(s) | 106, 168 |
| Bst6I | CTCTTC | 1 cut(s) | 314 |
| BstC8I | GCNNGC | 1 cut(s) | 141 |
| BstF5I | GGATG | 2 cut(s) | 265, 301 |
| BstKTI | GATC | 1 cut(s) | 223 |
| BstMAI | GTCTC | 1 cut(s) | 257 |
| BstMBI | GATC | 1 cut(s) | 220 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 145 |
| BstSCI | CCNGG | 1 cut(s) | 143 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 80 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| BsuRI | GGCC | 2 cut(s) | 139, 143 |
| BtsCI | GGATG | 2 cut(s) | 265, 301 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| Cac8I | GCNNGC | 1 cut(s) | 141 |
| Cfr10I | RCCGGY | 2 cut(s) | 38, 139 |
| CspAI | ACCGGT | 1 cut(s) | 38 |
| CviAII | CATG | 4 cut(s) | 194, 204, 227, 325 |
| CviJI | RGCY | 5 cut(s) | 96, 139, 143, 177, 284 |
| CviKI_1 | RGCY | 5 cut(s) | 96, 139, 143, 177, 284 |
| DpnI | GATC | 1 cut(s) | 222 |
| DpnII | GATC | 1 cut(s) | 220 |
| EaeI | YGGCCR | 2 cut(s) | 137, 141 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 1 cut(s) | 314 |
| EarI | CTCTTC | 1 cut(s) | 314 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco32I | GATATC | 1 cut(s) | 307 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 1 cut(s) | 338 |
| EcoRV | GATATC | 1 cut(s) | 307 |
| FaeI | CATG | 4 cut(s) | 197, 207, 230, 328 |
| FaiI | YATR | 7 cut(s) | 59, 101, 195, 205, 228, 326, 331 |
| FatI | CATG | 4 cut(s) | 193, 203, 226, 324 |
| FauI | CCCGC | 1 cut(s) | 234 |
| FbaI | TGATCA | 1 cut(s) | 220 |
| FokI | GGATG | 2 cut(s) | 272, 308 |
| FseI | GGCCGGCC | 1 cut(s) | 143 |
| FspBI | CTAG | 1 cut(s) | 281 |
| HaeIII | GGCC | 2 cut(s) | 139, 143 |
| HapII | CCGG | 3 cut(s) | 39, 140, 144 |
| Hin1II | CATG | 4 cut(s) | 197, 207, 230, 328 |
| HindIII | AAGCTT | 1 cut(s) | 94 |
| HinfI | GANTC | 1 cut(s) | 200 |
| HpaII | CCGG | 3 cut(s) | 39, 140, 144 |
| HphI | GGTGA | 3 cut(s) | 53, 77, 124 |
| Hpy188I | TCNGA | 1 cut(s) | 122 |
| HpyCH4III | ACNGT | 2 cut(s) | 106, 168 |
| HpyCH4V | TGCA | 2 cut(s) | 302, 313 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 145 |
| Hsp92II | CATG | 4 cut(s) | 197, 207, 230, 328 |
| KroI | GCCGGC | 1 cut(s) | 139 |
| KroNI | GCCGGC | 1 cut(s) | 141 |
| Ksp22I | TGATCA | 1 cut(s) | 220 |
| Kzo9I | GATC | 1 cut(s) | 220 |
| LguI | GCTCTTC | 1 cut(s) | 314 |
| LpnPI | CCDG | 5 cut(s) | 52, 95, 153, 157, 270 |
| LweI | GCATC | 2 cut(s) | 23, 289 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MaeIII | GTNAC | 1 cut(s) | 41 |
| MalI | GATC | 1 cut(s) | 222 |
| MboI | GATC | 1 cut(s) | 220 |
| MboII | GAAGA | 5 cut(s) | 16, 89, 209, 242, 331 |
| MluCI | AATT | 2 cut(s) | 8, 51 |
| MmeI | TCCRAC | 1 cut(s) | 150 |
| MnlI | CCTC | 3 cut(s) | 22, 56, 202 |
| MroNI | GCCGGC | 1 cut(s) | 139 |
| MseI | TTAA | 3 cut(s) | 24, 237, 394 |
| MslI | CAYNNNNRTG | 1 cut(s) | 133 |
| MspI | CCGG | 3 cut(s) | 39, 140, 144 |
| MspR9I | CCNGG | 1 cut(s) | 145 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 145 |
| NaeI | GCCGGC | 1 cut(s) | 141 |
| NciI | CCSGG | 1 cut(s) | 145 |
| NdeII | GATC | 1 cut(s) | 220 |
| NgoMIV | GCCGGC | 1 cut(s) | 139 |
| NlaIII | CATG | 4 cut(s) | 197, 207, 230, 328 |
| NmuCI | GTSAC | 1 cut(s) | 41 |
| PciSI | GCTCTTC | 1 cut(s) | 314 |
| PdiI | GCCGGC | 1 cut(s) | 141 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PinAI | ACCGGT | 1 cut(s) | 38 |
| RigI | GGCCGGCC | 1 cut(s) | 143 |
| RseI | CAYNNNNRTG | 1 cut(s) | 133 |
| SapI | GCTCTTC | 1 cut(s) | 314 |
| SaqAI | TTAA | 3 cut(s) | 24, 237, 394 |
| Sau3AI | GATC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 1 cut(s) | 145 |
| SetI | ASST | 4 cut(s) | 67, 98, 179, 286 |
| SfaNI | GCATC | 2 cut(s) | 23, 289 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 133 |
| Sse9I | AATT | 2 cut(s) | 8, 51 |
| SsiI | CCGC | 2 cut(s) | 241, 361 |
| SspMI | CTAG | 1 cut(s) | 281 |
| StyD4I | CCNGG | 1 cut(s) | 143 |
| TaaI | ACNGT | 2 cut(s) | 106, 168 |
| TasI | AATT | 2 cut(s) | 8, 51 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 3 cut(s) | 24, 237, 394 |
| Tru9I | TTAA | 3 cut(s) | 24, 237, 394 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TseFI | GTSAC | 1 cut(s) | 41 |
| Tsp45I | GTSAC | 1 cut(s) | 41 |
| TspDTI | ATGAA | 7 cut(s) | 17, 88, 192, 200, 210, 243, 263 |
| TspGWI | ACGGA | 1 cut(s) | 177 |
| TspRI | CASTG | 1 cut(s) | 52 |
| XspI | CTAG | 1 cut(s) | 281 |