gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 61 |
| AccII | CGCG | 3 cut(s) | 883, 1018, 1453 |
| AciI | CCGC | 4 cut(s) | 59, 836, 1421, 1453 |
| AclI | AACGTT | 1 cut(s) | 1039 |
| AclWI | GGATC | 1 cut(s) | 1315 |
| AcoI | YGGCCR | 2 cut(s) | 1207, 1665 |
| AcsI | RAATTY | 2 cut(s) | 1516, 1764 |
| AcuI | CTGAAG | 1 cut(s) | 1214 |
| AcyI | GRCGYC | 1 cut(s) | 1045 |
| AfaI | GTAC | 4 cut(s) | 214, 319, 474, 1296 |
| AfeI | AGCGCT | 1 cut(s) | 1084 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 26, 1343, 1508 |
| AflIII | ACRYGT | 7 cut(s) | 45, 475, 1162, 1297, 1389, 1438, 1537 |
| AgsI | TTSAA | 6 cut(s) | 484, 670, 748, 1169, 1471, 1507 |
| AjnI | CCWGG | 5 cut(s) | 145, 825, 859, 1098, 1323 |
| AluBI | AGCT | 1 cut(s) | 1672 |
| AluI | AGCT | 1 cut(s) | 1672 |
| Alw21I | GWGCWC | 1 cut(s) | 932 |
| Alw26I | GTCTC | 4 cut(s) | 1099, 1189, 1261, 1407 |
| AlwI | GGATC | 1 cut(s) | 1315 |
| Ama87I | CYCGRG | 1 cut(s) | 775 |
| Aor51HI | AGCGCT | 1 cut(s) | 1084 |
| AoxI | GGCC | 5 cut(s) | 69, 95, 798, 1207, 1665 |
| ApeKI | GCWGC | 2 cut(s) | 301, 785 |
| ApoI | RAATTY | 2 cut(s) | 1516, 1764 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1388, 1420 |
| AspLEI | GCGC | 4 cut(s) | 683, 883, 1085, 1453 |
| AspS9I | GGNCC | 3 cut(s) | 96, 866, 1396 |
| AsuC2I | CCSGG | 2 cut(s) | 776, 777 |
| AsuHPI | GGTGA | 1 cut(s) | 1040 |
| AsuNHI | GCTAGC | 1 cut(s) | 1085 |
| AvaI | CYCGRG | 1 cut(s) | 775 |
| AvaII | GGWCC | 2 cut(s) | 866, 1396 |
| AxyI | CCTNAGG | 1 cut(s) | 381 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 536, 569 |
| BalI | TGGCCA | 1 cut(s) | 1667 |
| Bbv12I | GWGCWC | 1 cut(s) | 932 |
| BbvI | GCAGC | 2 cut(s) | 313, 797 |
| BccI | CCATC | 2 cut(s) | 801, 1199 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 919, 953 |
| BciT130I | CCWGG | 5 cut(s) | 147, 827, 861, 1100, 1325 |
| BciVI | GTATCC | 1 cut(s) | 1356 |
| BcnI | CCSGG | 2 cut(s) | 776, 777 |
| BcoDI | GTCTC | 4 cut(s) | 1099, 1189, 1261, 1407 |
| BfaI | CTAG | 3 cut(s) | 53, 1086, 1109 |
| BfmI | CTRYAG | 1 cut(s) | 109 |
| BfoI | RGCGCY | 1 cut(s) | 1086 |
| BfuI | GTATCC | 1 cut(s) | 1356 |
| BisI | GCNGC | 3 cut(s) | 59, 302, 786 |
| BlsI | GCNGC | 3 cut(s) | 60, 303, 787 |
| Bme1390I | CCNGG | 7 cut(s) | 147, 776, 777, 827, 861, 1100, 1325 |
| Bme18I | GGWCC | 2 cut(s) | 866, 1396 |
| BmeT110I | CYCGRG | 1 cut(s) | 775 |
| BmgT120I | GGNCC | 3 cut(s) | 96, 866, 1396 |
| BmiI | GGNNCC | 2 cut(s) | 902, 1097 |
| BmrFI | CCNGG | 7 cut(s) | 147, 776, 777, 827, 861, 1100, 1325 |
| BmsI | GCATC | 3 cut(s) | 1182, 1360, 1594 |
| BmtI | GCTAGC | 1 cut(s) | 1089 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 229, 261 |
| BpmI | CTGGAG | 1 cut(s) | 882 |
| BpuMI | CCSGG | 2 cut(s) | 776, 777 |
| Bsa29I | ATCGAT | 1 cut(s) | 1602 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1431 |
| BsaHI | GRCGYC | 1 cut(s) | 1045 |
| BsaJI | CCNNGG | 3 cut(s) | 775, 859, 1099 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 151, 181 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 26, 1343, 1508 |
| Bse118I | RCCGGY | 1 cut(s) | 1209 |
| Bse1I | ACTGG | 2 cut(s) | 1119, 1283 |
| Bse21I | CCTNAGG | 1 cut(s) | 381 |
| Bse3DI | GCAATG | 1 cut(s) | 697 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1431 |
| BseBI | CCWGG | 5 cut(s) | 147, 827, 861, 1100, 1325 |
| BseCI | ATCGAT | 1 cut(s) | 1602 |
| BseDI | CCNNGG | 3 cut(s) | 775, 859, 1099 |
| BseGI | GGATG | 1 cut(s) | 1144 |
| BseJI | GATNNNNATC | 1 cut(s) | 1431 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 26, 1343, 1508 |
| BseMI | GCAATG | 1 cut(s) | 697 |
| BseMII | CTCAG | 4 cut(s) | 270, 395, 654, 1716 |
| BseNI | ACTGG | 2 cut(s) | 1119, 1283 |
| BseXI | GCAGC | 2 cut(s) | 313, 797 |
| BsgI | GTGCAG | 1 cut(s) | 1173 |
| Bsh1236I | CGCG | 3 cut(s) | 883, 1018, 1453 |
| BshFI | GGCC | 5 cut(s) | 71, 97, 800, 1209, 1667 |
| BshVI | ATCGAT | 1 cut(s) | 1602 |
| BsiHKAI | GWGCWC | 1 cut(s) | 932 |
| BsiHKCI | CYCGRG | 1 cut(s) | 775 |
| BsiSI | CCGG | 2 cut(s) | 776, 1210 |
| BslFI | GGGAC | 2 cut(s) | 99, 1270 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 26, 1343, 1508 |
| BsmAI | GTCTC | 4 cut(s) | 1099, 1189, 1261, 1407 |
| BsmFI | GGGAC | 2 cut(s) | 99, 1270 |
| BsmI | GAATGC | 1 cut(s) | 1735 |
| BsnI | GGCC | 5 cut(s) | 71, 97, 800, 1209, 1667 |
| BsoBI | CYCGRG | 1 cut(s) | 775 |
| Bsp1286I | GDGCHC | 1 cut(s) | 932 |
| Bsp1407I | TGTACA | 1 cut(s) | 472 |
| Bsp143I | GATC | 3 cut(s) | 388, 1008, 1320 |
| BspACI | CCGC | 4 cut(s) | 59, 836, 1421, 1453 |
| BspANI | GGCC | 5 cut(s) | 71, 97, 800, 1209, 1667 |
| BspCNI | CTCAG | 4 cut(s) | 271, 394, 655, 1717 |
| BspDI | ATCGAT | 1 cut(s) | 1602 |
| BspFNI | CGCG | 3 cut(s) | 883, 1018, 1453 |
| BspHI | TCATGA | 1 cut(s) | 63 |
| BspLI | GGNNCC | 2 cut(s) | 902, 1097 |
| BspMAI | CTGCAG | 1 cut(s) | 113 |
| BspOI | GCTAGC | 1 cut(s) | 1089 |
| BspPI | GGATC | 1 cut(s) | 1315 |
| BsrBI | CCGCTC | 1 cut(s) | 61 |
| BsrDI | GCAATG | 1 cut(s) | 697 |
| BsrFI | RCCGGY | 1 cut(s) | 1209 |
| BsrGI | TGTACA | 1 cut(s) | 472 |
| BsrI | ACTGG | 2 cut(s) | 1119, 1283 |
| BssAI | RCCGGY | 1 cut(s) | 1209 |
| BssECI | CCNNGG | 3 cut(s) | 775, 859, 1099 |
| BssMI | GATC | 3 cut(s) | 388, 1008, 1320 |
| BssNI | GRCGYC | 1 cut(s) | 1045 |
| Bst2UI | CCWGG | 5 cut(s) | 147, 827, 861, 1100, 1325 |
| Bst4CI | ACNGT | 3 cut(s) | 552, 1073, 1400 |
| Bst6I | CTCTTC | 3 cut(s) | 665, 1018, 1190 |
| BstACI | GRCGYC | 1 cut(s) | 1045 |
| BstAUI | TGTACA | 1 cut(s) | 472 |
| BstC8I | GCNNGC | 3 cut(s) | 512, 1087, 1211 |
| BstDEI | CTNAG | 6 cut(s) | 279, 381, 663, 1552, 1632, 1725 |
| BstF5I | GGATG | 1 cut(s) | 1144 |
| BstFNI | CGCG | 3 cut(s) | 883, 1018, 1453 |
| BstH2I | RGCGCY | 1 cut(s) | 1086 |
| BstHHI | GCGC | 4 cut(s) | 683, 883, 1085, 1453 |
| BstKTI | GATC | 3 cut(s) | 391, 1011, 1323 |
| BstMAI | GTCTC | 4 cut(s) | 1099, 1189, 1261, 1407 |
| BstMBI | GATC | 3 cut(s) | 388, 1008, 1320 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 58, 687, 1379, 1628 |
| BstNI | CCWGG | 5 cut(s) | 147, 827, 861, 1100, 1325 |
| BstNSI | RCATGY | 9 cut(s) | 49, 479, 1166, 1224, 1301, 1316, 1393, 1442, 1541 |
| BstSCI | CCNGG | 7 cut(s) | 145, 774, 775, 825, 859, 1098, 1323 |
| BstSFI | CTRYAG | 1 cut(s) | 109 |
| BstUI | CGCG | 3 cut(s) | 883, 1018, 1453 |
| BstV1I | GCAGC | 2 cut(s) | 313, 797 |
| BstX2I | RGATCY | 1 cut(s) | 1320 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 255 |
| BstYI | RGATCY | 1 cut(s) | 1320 |
| Bsu15I | ATCGAT | 1 cut(s) | 1602 |
| Bsu36I | CCTNAGG | 1 cut(s) | 381 |
| BsuI | GTATCC | 1 cut(s) | 1356 |
| BsuRI | GGCC | 5 cut(s) | 71, 97, 800, 1209, 1667 |
| BsuTUI | ATCGAT | 1 cut(s) | 1602 |
| BtgZI | GCGATG | 1 cut(s) | 1397 |
| BtsCI | GGATG | 1 cut(s) | 1144 |
| BtsIMutI | CAGTG | 3 cut(s) | 660, 1190, 1276 |
| Cac8I | GCNNGC | 3 cut(s) | 512, 1087, 1211 |
| CciI | TCATGA | 1 cut(s) | 63 |
| CfoI | GCGC | 4 cut(s) | 683, 883, 1085, 1453 |
| Cfr10I | RCCGGY | 1 cut(s) | 1209 |
| Cfr13I | GGNCC | 3 cut(s) | 96, 866, 1396 |
| Cfr9I | CCCGGG | 1 cut(s) | 775 |
| ClaI | ATCGAT | 1 cut(s) | 1602 |
| CseI | GACGC | 2 cut(s) | 1007, 1034 |
| Csp6I | GTAC | 4 cut(s) | 213, 318, 473, 1295 |
| CviQI | GTAC | 4 cut(s) | 213, 318, 473, 1295 |
| DdeI | CTNAG | 6 cut(s) | 279, 381, 663, 1552, 1632, 1725 |
| DpnI | GATC | 3 cut(s) | 390, 1010, 1322 |
| DpnII | GATC | 3 cut(s) | 388, 1008, 1320 |
| DraI | TTTAAA | 3 cut(s) | 373, 1431, 1522 |
| EaeI | YGGCCR | 2 cut(s) | 1207, 1665 |
| Eam1104I | CTCTTC | 3 cut(s) | 665, 1018, 1190 |
| EarI | CTCTTC | 3 cut(s) | 665, 1018, 1190 |
| Eco47I | GGWCC | 2 cut(s) | 866, 1396 |
| Eco47III | AGCGCT | 1 cut(s) | 1084 |
| Eco57I | CTGAAG | 1 cut(s) | 1214 |
| Eco81I | CCTNAGG | 1 cut(s) | 381 |
| Eco88I | CYCGRG | 1 cut(s) | 775 |
| EcoRII | CCWGG | 5 cut(s) | 145, 825, 859, 1098, 1323 |
| EcoT22I | ATGCAT | 1 cut(s) | 1248 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 613, 645 |
| FaqI | GGGAC | 2 cut(s) | 99, 1270 |
| FauI | CCCGC | 1 cut(s) | 1446 |
| Fnu4HI | GCNGC | 3 cut(s) | 59, 302, 786 |
| FokI | GGATG | 1 cut(s) | 1151 |
| Fsp4HI | GCNGC | 3 cut(s) | 59, 302, 786 |
| FspBI | CTAG | 3 cut(s) | 53, 1086, 1109 |
| GlaI | GCGC | 4 cut(s) | 682, 882, 1084, 1452 |
| GluI | GCNGC | 3 cut(s) | 59, 302, 786 |
| GsuI | CTGGAG | 1 cut(s) | 882 |
| HaeII | RGCGCY | 1 cut(s) | 1086 |
| HaeIII | GGCC | 5 cut(s) | 71, 97, 800, 1209, 1667 |
| HapII | CCGG | 2 cut(s) | 776, 1210 |
| HgaI | GACGC | 2 cut(s) | 1007, 1034 |
| HhaI | GCGC | 4 cut(s) | 683, 883, 1085, 1453 |
| Hin1I | GRCGYC | 1 cut(s) | 1045 |
| Hin6I | GCGC | 4 cut(s) | 681, 881, 1083, 1451 |
| HinP1I | GCGC | 4 cut(s) | 681, 881, 1083, 1451 |
| HincII | GTYRAC | 2 cut(s) | 40, 232 |
| HindII | GTYRAC | 2 cut(s) | 40, 232 |
| HindIII | AAGCTT | 1 cut(s) | 1670 |
| HinfI | GANTC | 3 cut(s) | 74, 356, 1459 |
| HpaII | CCGG | 2 cut(s) | 776, 1210 |
| HphI | GGTGA | 1 cut(s) | 1040 |
| Hpy166II | GTNNAC | 6 cut(s) | 40, 116, 232, 559, 919, 1160 |
| Hpy188I | TCNGA | 4 cut(s) | 280, 730, 967, 1338 |
| Hpy188III | TCNNGA | 5 cut(s) | 64, 383, 392, 1543, 1678 |
| Hpy8I | GTNNAC | 6 cut(s) | 40, 116, 232, 559, 919, 1160 |
| HpyAV | CCTTC | 7 cut(s) | 20, 61, 478, 512, 799, 1129, 1247 |
| HpyCH4III | ACNGT | 3 cut(s) | 552, 1073, 1400 |
| HpyCH4IV | ACGT | 4 cut(s) | 349, 492, 1039, 1375 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 58, 687, 1379, 1628 |
| HpyF3I | CTNAG | 6 cut(s) | 279, 381, 663, 1552, 1632, 1725 |
| HpySE526I | ACGT | 4 cut(s) | 349, 492, 1039, 1375 |
| Hsp92I | GRCGYC | 1 cut(s) | 1045 |
| HspAI | GCGC | 4 cut(s) | 681, 881, 1083, 1451 |
| KroI | GCCGGC | 1 cut(s) | 1209 |
| KroNI | GCCGGC | 1 cut(s) | 1211 |
| Kzo9I | GATC | 3 cut(s) | 388, 1008, 1320 |
| LmnI | GCTCC | 2 cut(s) | 906, 1101 |
| Lsp1109I | GCAGC | 2 cut(s) | 313, 797 |
| LweI | GCATC | 3 cut(s) | 1182, 1360, 1594 |
| MaeI | CTAG | 3 cut(s) | 53, 1086, 1109 |
| MaeII | ACGT | 4 cut(s) | 349, 492, 1039, 1375 |
| MaeIII | GTNAC | 4 cut(s) | 1019, 1046, 1067, 1647 |
| MalI | GATC | 3 cut(s) | 390, 1010, 1322 |
| MbiI | CCGCTC | 1 cut(s) | 61 |
| MboI | GATC | 3 cut(s) | 388, 1008, 1320 |
| MboII | GAAGA | 8 cut(s) | 398, 479, 682, 712, 943, 1005, 1207, 1262 |
| MflI | RGATCY | 1 cut(s) | 1320 |
| MhlI | GDGCHC | 1 cut(s) | 932 |
| MlsI | TGGCCA | 1 cut(s) | 1667 |
| MluNI | TGGCCA | 1 cut(s) | 1667 |
| MlyI | GAGTC | 2 cut(s) | 83, 1468 |
| MmeI | TCCRAC | 5 cut(s) | 44, 211, 1361, 1374, 1487 |
| Mox20I | TGGCCA | 1 cut(s) | 1667 |
| Mph1103I | ATGCAT | 1 cut(s) | 1248 |
| MroNI | GCCGGC | 1 cut(s) | 1209 |
| MscI | TGGCCA | 1 cut(s) | 1667 |
| MseI | TTAA | 7 cut(s) | 90, 372, 462, 594, 1131, 1430, 1521 |
| MslI | CAYNNNNRTG | 3 cut(s) | 253, 1241, 1302 |
| Msp20I | TGGCCA | 1 cut(s) | 1667 |
| MspI | CCGG | 2 cut(s) | 776, 1210 |
| MspR9I | CCNGG | 7 cut(s) | 147, 776, 777, 827, 861, 1100, 1325 |
| Mva1269I | GAATGC | 1 cut(s) | 1735 |
| MvaI | CCWGG | 5 cut(s) | 147, 827, 861, 1100, 1325 |
| MvnI | CGCG | 3 cut(s) | 883, 1018, 1453 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 58, 687, 1379, 1628 |
| NaeI | GCCGGC | 1 cut(s) | 1211 |
| NciI | CCSGG | 2 cut(s) | 776, 777 |
| NdeII | GATC | 3 cut(s) | 388, 1008, 1320 |
| NgoMIV | GCCGGC | 1 cut(s) | 1209 |
| NheI | GCTAGC | 1 cut(s) | 1085 |
| NlaIV | GGNNCC | 2 cut(s) | 902, 1097 |
| NmeAIII | GCCGAG | 2 cut(s) | 97, 826 |
| NmuCI | GTSAC | 2 cut(s) | 1019, 1046 |
| NsiI | ATGCAT | 1 cut(s) | 1248 |
| NspI | RCATGY | 9 cut(s) | 49, 479, 1166, 1224, 1301, 1316, 1393, 1442, 1541 |
| PagI | TCATGA | 1 cut(s) | 63 |
| PciI | ACATGT | 7 cut(s) | 45, 475, 1162, 1297, 1389, 1438, 1537 |
| PctI | GAATGC | 1 cut(s) | 1735 |
| PdiI | GCCGGC | 1 cut(s) | 1211 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PflFI | GACNNNGTC | 1 cut(s) | 1354 |
| PfoI | TCCNGGA | 1 cut(s) | 1323 |
| PkrI | GCNGC | 3 cut(s) | 60, 303, 787 |
| PleI | GAGTC | 2 cut(s) | 82, 1467 |
| PpsI | GAGTC | 2 cut(s) | 82, 1467 |
| PscI | ACATGT | 7 cut(s) | 45, 475, 1162, 1297, 1389, 1438, 1537 |
| Psp1406I | AACGTT | 1 cut(s) | 1039 |
| Psp6I | CCWGG | 5 cut(s) | 145, 825, 859, 1098, 1323 |
| PspGI | CCWGG | 5 cut(s) | 145, 825, 859, 1098, 1323 |
| PspN4I | GGNNCC | 2 cut(s) | 902, 1097 |
| PspPI | GGNCC | 3 cut(s) | 96, 866, 1396 |
| PstI | CTGCAG | 1 cut(s) | 113 |
| PsuI | RGATCY | 1 cut(s) | 1320 |
| PsyI | GACNNNGTC | 1 cut(s) | 1354 |
| RsaI | GTAC | 4 cut(s) | 214, 319, 474, 1296 |
| RsaNI | GTAC | 4 cut(s) | 213, 318, 473, 1295 |
| RseI | CAYNNNNRTG | 3 cut(s) | 253, 1241, 1302 |
| SaqAI | TTAA | 7 cut(s) | 90, 372, 462, 594, 1131, 1430, 1521 |
| SatI | GCNGC | 3 cut(s) | 59, 302, 786 |
| Sau3AI | GATC | 3 cut(s) | 388, 1008, 1320 |
| Sau96I | GGNCC | 3 cut(s) | 96, 866, 1396 |
| SchI | GAGTC | 2 cut(s) | 83, 1468 |
| ScrFI | CCNGG | 7 cut(s) | 147, 776, 777, 827, 861, 1100, 1325 |
| SduI | GDGCHC | 1 cut(s) | 932 |
| SfaNI | GCATC | 3 cut(s) | 1182, 1360, 1594 |
| SfcI | CTRYAG | 1 cut(s) | 109 |
| SinI | GGWCC | 2 cut(s) | 866, 1396 |
| SmaI | CCCGGG | 1 cut(s) | 777 |
| SmiI | ATTTAAAT | 1 cut(s) | 1431 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 253, 1241, 1302 |
| SsiI | CCGC | 4 cut(s) | 59, 836, 1421, 1453 |
| SspI | AATATT | 1 cut(s) | 1495 |
| SspMI | CTAG | 3 cut(s) | 53, 1086, 1109 |
| StyD4I | CCNGG | 7 cut(s) | 145, 774, 775, 825, 859, 1098, 1323 |
| SwaI | ATTTAAAT | 1 cut(s) | 1431 |
| TaaI | ACNGT | 3 cut(s) | 552, 1073, 1400 |
| TaiI | ACGT | 4 cut(s) | 352, 495, 1042, 1378 |
| TaqI | TCGA | 4 cut(s) | 1514, 1542, 1602, 1719 |
| TatI | WGTACW | 2 cut(s) | 472, 1294 |
| TauI | GCSGC | 1 cut(s) | 61 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 7 cut(s) | 90, 372, 462, 594, 1131, 1430, 1521 |
| Tru9I | TTAA | 7 cut(s) | 90, 372, 462, 594, 1131, 1430, 1521 |
| TscAI | CASTG | 3 cut(s) | 667, 1197, 1283 |
| TseFI | GTSAC | 2 cut(s) | 1019, 1046 |
| TseI | GCWGC | 2 cut(s) | 301, 785 |
| Tsp45I | GTSAC | 2 cut(s) | 1019, 1046 |
| TspDTI | ATGAA | 8 cut(s) | 80, 155, 446, 633, 1225, 1263, 1400, 1473 |
| TspGWI | ACGGA | 3 cut(s) | 335, 544, 1003 |
| TspMI | CCCGGG | 1 cut(s) | 775 |
| TspRI | CASTG | 3 cut(s) | 667, 1197, 1283 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1354 |
| VpaK11BI | GGWCC | 2 cut(s) | 866, 1396 |
| XapI | RAATTY | 2 cut(s) | 1516, 1764 |
| XceI | RCATGY | 9 cut(s) | 49, 479, 1166, 1224, 1301, 1316, 1393, 1442, 1541 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 255 |
| XmaI | CCCGGG | 1 cut(s) | 775 |
| XspI | CTAG | 3 cut(s) | 53, 1086, 1109 |
| Zsp2I | ATGCAT | 1 cut(s) | 1248 |