Rh1BG060900

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000030
Physical Location & Seq
Reverse (-)
9032311 .. 9038831
6521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG060900.1

Sequence Viewer

Length: 1323 bp
ATGTTTAACAAGTTCAAGGATGGTGATGGGAAATTTAAAGAATCGCTTGTTAATGATGTAGTCGGCCTGTTAAGCTTGTATGAAGCCTCGCATCTTCAGATGCCTGGGGAGGATTTACTAAACGAGGCACTAACCTTCTCCACCGCTCATCTCATGTCTGCAGCACACCGTTTAAGCTCATCATCTCAGCTTTCAAAACAAGTAACTCATGCCTTGTATCAGCCCCTTTGGAAGGGCATGCCAAGGATTGAAGCGAGGCATCACTTGTCTCTTTACCAAGAAGATGATGCACATAATGAAACTCTCCTGAATTTTGCAAAGTTCGATTTTAACACTGTGCAGAAAGTCCATCAGAAAGAACTGAGCGAAATTACGAGGTGGTGGAAGGATTTCGACTTTGCAAACAAGCAACCTTTTGCAAGAGACAGGGTAGTTGAGGCCTATTTTTGGGCTTTGGCAGTCTACTTTGAGCCGGAATATTCCTTTGCTCGGATGGTGTCAGCCAAAGCTACTGCTATAATTACAGTCATTGACGACATATATGATGTGCATGGCACGTCTTATACCTCGGAGAGGATTCCATGCACCGTCGGGTCACTTGCACCAGCAGTGTGCAAGTCACGTGTGCTAACAGACCATTCACCCCACGGAGCTCAAATTCCCTTTGAACCTCCAAATCCAAAGGAAGCTATAAAGTGGTTTTATCTTGCTTCTTTTCAGGGCTATGTCCGAGCTCAATACCAACTTGCAATTTGTCTGTATCAGGGACGTGGGGCAGATCGTAACATGAAAGAAGCGGTGATGGCGTCAAATAAGGCCTCAAGTGACGACAACAGCGGAAGAATGAAGAGAAGAAAACTCAGAGAAATGTTTCCTGCCAACAAAGGCGAGACCAATGAATCAATTCATGTTAGTATTGGATTTCACATTAGTGTGTTTGAAGGTATGTCTTTGTTGAAGTCTGAAGTAGCTGCGATAAAGTCTGATGTGGGGAGGCTTAGATCAACGCTGGGATGTTTGGAACCCAATATTGAGACATTGAGACAAAAATTAATTGAAGTACAAGACTTAGCCTGTGAACTGAAAGTTGGTGGGATTGAAGGTATTGTTGGTGAGGTAATACATGTTGTGACAACAATGTGGCCAAACACCATGCATAAGGTTGCTGAAAATGTTATACAACCCATGGAGGAGAATGGTGAGCACAATTTGGTCGCTGACATTCGCAAGGAGTCACGAAAGAGGAAATTTTGGCTCAGCCATCCAATTTGGAATTTTAGTCTCAGCCCTCCATTATCATTGGACAGCCGTGCGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

440

Amino Acids

49.9

Weight (kDa)

7.02

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 72 3.3e-21 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 129 - 186 6.8e-22 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 462
AciI CCGC 3 cut(s) 144, 797, 837
AcoI YGGCCR 1 cut(s) 1142
AcsI RAATTY 5 cut(s) 32, 310, 657, 1247, 1273
AcuI CTGAAG 2 cut(s) 80, 984
AcvI CACGTG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 806
AfaI GTAC 1 cut(s) 1062
AfiI CCNNNNNNNGG 4 cut(s) 232, 447, 489, 573
AflIII ACRYGT 2 cut(s) 622, 1123
AgsI TTSAA 8 cut(s) 16, 195, 251, 668, 941, 958, 1058, 1100
AjiI CACGTC 2 cut(s) 558, 770
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 4 cut(s) 1071, 1092, 1103, 1124
AleI CACNNNNGTG 1 cut(s) 930
AluBI AGCT 8 cut(s) 75, 177, 190, 509, 653, 689, 734, 971
AluI AGCT 8 cut(s) 75, 177, 190, 509, 653, 689, 734, 971
Alw21I GWGCWC 3 cut(s) 655, 736, 1206
Alw26I GTCTC 6 cut(s) 273, 417, 884, 1028, 1036, 1286
AoxI GGCC 4 cut(s) 64, 438, 816, 1142
ApeKI GCWGC 2 cut(s) 161, 971
ApoI RAATTY 5 cut(s) 32, 310, 657, 1247, 1273
AseI ATTAAT 1 cut(s) 1052
Asp700I GAANNNNTTC 3 cut(s) 389, 870, 903
AsuHPI GGTGA 5 cut(s) 35, 633, 811, 1124, 1211
BalI TGGCCA 1 cut(s) 1144
BanII GRGCYC 2 cut(s) 655, 736
BbrPI CACGTG 1 cut(s) 623
Bbv12I GWGCWC 3 cut(s) 655, 736, 1206
BbvI GCAGC 2 cut(s) 173, 958
BccI CCATC 6 cut(s) 14, 20, 357, 487, 796, 1269
BceAI ACGGC 1 cut(s) 1293
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 6 cut(s) 273, 417, 884, 1028, 1036, 1286
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 162, 972
BlpI GCTNAGC 1 cut(s) 1256
BlsI GCNGC 2 cut(s) 163, 973
Bme1390I CCNGG 1 cut(s) 105
BmgBI CACGTC 2 cut(s) 558, 770
BmiI GGNNCC 1 cut(s) 1023
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 90, 100, 268, 277
Bpu1102I GCTNAGC 1 cut(s) 1256
BpuEI CTTGAG 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 806
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 104, 242, 567, 646, 1185
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 447, 489, 573
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 5 cut(s) 104, 242, 567, 646, 1185
BseGI GGATG 4 cut(s) 25, 498, 1019, 1261
BseLI CCNNNNNNNGG 4 cut(s) 232, 447, 489, 573
BseMII CTCAG 5 cut(s) 200, 353, 874, 1270, 1297
BseRI GAGGAG 1 cut(s) 1205
BseXI GCAGC 2 cut(s) 173, 958
BseYI CCCAGC 1 cut(s) 1009
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 4 cut(s) 66, 440, 818, 1144
BsiHKAI GWGCWC 3 cut(s) 655, 736, 1206
BsiSI CCGG 1 cut(s) 473
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 4 cut(s) 232, 447, 489, 573
BsmAI GTCTC 6 cut(s) 273, 417, 884, 1028, 1036, 1286
BsmFI GGGAC 1 cut(s) 780
BsnI GGCC 4 cut(s) 66, 440, 818, 1144
Bso31I GGTCTC 1 cut(s) 884
Bsp1286I GDGCHC 3 cut(s) 655, 736, 1206
Bsp143I GATC 2 cut(s) 778, 1001
Bsp1720I GCTNAGC 1 cut(s) 1256
Bsp19I CCATGG 1 cut(s) 1185
BspACI CCGC 3 cut(s) 144, 797, 837
BspANI GGCC 4 cut(s) 66, 440, 818, 1144
BspCNI CTCAG 5 cut(s) 199, 354, 873, 1269, 1296
BspLI GGNNCC 1 cut(s) 1023
BspMAI CTGCAG 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 884
BsrBI CCGCTC 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 104, 242, 567, 646, 1185
BssMI GATC 2 cut(s) 778, 1001
BssNI GRCGYC 1 cut(s) 806
BssT1I CCWWGG 2 cut(s) 242, 1185
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 4 cut(s) 170, 337, 526, 589
Bst6I CTCTTC 1 cut(s) 842
BstACI GRCGYC 1 cut(s) 806
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 7 cut(s) 186, 362, 860, 998, 1069, 1256, 1283
BstDSI CCRYGG 2 cut(s) 646, 1185
BstENI CCTNNNNNAGG 2 cut(s) 230, 571
BstF5I GGATG 4 cut(s) 25, 498, 1019, 1261
BstKTI GATC 2 cut(s) 781, 1004
BstMAI GTCTC 6 cut(s) 273, 417, 884, 1028, 1036, 1286
BstMBI GATC 2 cut(s) 778, 1001
BstMWI GCNNNNNNNGC 2 cut(s) 72, 803
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 2 cut(s) 241, 1127
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 173, 958
BsuRI GGCC 4 cut(s) 66, 440, 818, 1144
BtgI CCRYGG 2 cut(s) 646, 1185
BtrI CACGTC 2 cut(s) 558, 770
BtsCI GGATG 4 cut(s) 25, 498, 1019, 1261
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 3 cut(s) 333, 615, 1318
Cac8I GCNNGC 1 cut(s) 239
CseI GACGC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 1061
CviQI GTAC 1 cut(s) 1061
DdeI CTNAG 7 cut(s) 186, 362, 860, 998, 1069, 1256, 1283
DpnI GATC 2 cut(s) 780, 1003
DpnII GATC 2 cut(s) 778, 1001
DraI TTTAAA 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 1142
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
Ecl136II GAGCTC 2 cut(s) 653, 734
Eco130I CCWWGG 2 cut(s) 242, 1185
Eco147I AGGCCT 2 cut(s) 440, 818
Eco24I GRGCYC 2 cut(s) 655, 736
Eco31I GGTCTC 1 cut(s) 884
Eco53kI GAGCTC 2 cut(s) 653, 734
Eco57I CTGAAG 2 cut(s) 80, 984
Eco72I CACGTG 1 cut(s) 623
EcoICRI GAGCTC 2 cut(s) 653, 734
EcoNI CCTNNNNNAGG 2 cut(s) 230, 571
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 242, 1185
EcoT22I ATGCAT 1 cut(s) 1158
EcoT38I GRGCYC 2 cut(s) 655, 736
ErhI CCWWGG 2 cut(s) 242, 1185
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 780
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 162, 972
FokI GGATG 4 cut(s) 32, 505, 1026, 1248
FriOI GRGCYC 2 cut(s) 655, 736
Fsp4HI GCNGC 2 cut(s) 162, 972
GluI GCNGC 2 cut(s) 162, 972
GsaI CCCAGC 1 cut(s) 1013
HaeIII GGCC 4 cut(s) 66, 440, 818, 1144
HapII CCGG 1 cut(s) 473
HgaI GACGC 1 cut(s) 795
Hin1I GRCGYC 1 cut(s) 806
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 4 cut(s) 41, 577, 899, 1232
HpaII CCGG 1 cut(s) 473
HphI GGTGA 5 cut(s) 35, 633, 811, 1124, 1211
Hpy166II GTNNAC 2 cut(s) 463, 1079
Hpy188I TCNGA 8 cut(s) 99, 354, 492, 571, 731, 863, 964, 985
Hpy188III TCNNGA 2 cut(s) 307, 1236
Hpy8I GTNNAC 2 cut(s) 463, 1079
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 5 cut(s) 145, 226, 379, 935, 1094
HpyCH4III ACNGT 4 cut(s) 170, 337, 526, 589
HpyCH4IV ACGT 3 cut(s) 557, 622, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 803
HpyF3I CTNAG 7 cut(s) 186, 362, 860, 998, 1069, 1256, 1283
HpySE526I ACGT 3 cut(s) 557, 622, 769
Hsp92I GRCGYC 1 cut(s) 806
Kzo9I GATC 2 cut(s) 778, 1001
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 2 cut(s) 173, 958
LweI GCATC 4 cut(s) 90, 100, 268, 277
MaeII ACGT 3 cut(s) 557, 622, 769
MaeIII GTNAC 7 cut(s) 202, 594, 618, 782, 824, 1129, 1233
MalI GATC 2 cut(s) 780, 1003
MbiI CCGCTC 1 cut(s) 146
MboI GATC 2 cut(s) 778, 1001
MboII GAAGA 5 cut(s) 86, 293, 852, 859, 864
MhlI GDGCHC 3 cut(s) 655, 736, 1206
MlsI TGGCCA 1 cut(s) 1144
MluNI TGGCCA 1 cut(s) 1144
MlyI GAGTC 1 cut(s) 1241
Mox20I TGGCCA 1 cut(s) 1144
Mph1103I ATGCAT 1 cut(s) 1158
MroXI GAANNNNTTC 3 cut(s) 389, 870, 903
MscI TGGCCA 1 cut(s) 1144
MseI TTAA 7 cut(s) 6, 36, 51, 71, 173, 330, 1052
MslI CAYNNNNRTG 2 cut(s) 930, 932
Msp20I TGGCCA 1 cut(s) 1144
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 72, 803
NcoI CCATGG 1 cut(s) 1185
NdeII GATC 2 cut(s) 778, 1001
NlaIV GGNNCC 1 cut(s) 1023
NmuCI GTSAC 5 cut(s) 594, 618, 824, 1129, 1233
NsiI ATGCAT 1 cut(s) 1158
NspI RCATGY 2 cut(s) 241, 1127
OliI CACNNNNGTG 1 cut(s) 930
PaeI GCATGC 1 cut(s) 241
PceI AGGCCT 2 cut(s) 440, 818
PciI ACATGT 1 cut(s) 1123
PdmI GAANNNNTTC 3 cut(s) 389, 870, 903
PfeI GAWTC 3 cut(s) 41, 577, 899
PkrI GCNGC 2 cut(s) 163, 973
PleI GAGTC 1 cut(s) 1240
PmaCI CACGTG 1 cut(s) 623
PmlI CACGTG 1 cut(s) 623
PpsI GAGTC 1 cut(s) 1240
Ppu21I YACGTR 1 cut(s) 623
PscI ACATGT 1 cut(s) 1123
PshBI ATTAAT 1 cut(s) 1052
Psp124BI GAGCTC 2 cut(s) 655, 736
Psp6I CCWGG 1 cut(s) 103
PspCI CACGTG 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 1009
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 1023
PstI CTGCAG 1 cut(s) 163
RsaI GTAC 1 cut(s) 1062
RsaNI GTAC 1 cut(s) 1061
RseI CAYNNNNRTG 2 cut(s) 930, 932
SacI GAGCTC 2 cut(s) 655, 736
SaqAI TTAA 7 cut(s) 6, 36, 51, 71, 173, 330, 1052
SatI GCNGC 2 cut(s) 162, 972
Sau3AI GATC 2 cut(s) 778, 1001
SchI GAGTC 1 cut(s) 1241
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 3 cut(s) 655, 736, 1206
SfaNI GCATC 4 cut(s) 90, 100, 268, 277
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 930, 932
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
SphI GCATGC 1 cut(s) 241
SseBI AGGCCT 2 cut(s) 440, 818
SsiI CCGC 3 cut(s) 144, 797, 837
SspI AATATT 2 cut(s) 479, 1030
SstI GAGCTC 2 cut(s) 655, 736
StuI AGGCCT 2 cut(s) 440, 818
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 242, 1185
TaaI ACNGT 4 cut(s) 170, 337, 526, 589
TaiI ACGT 3 cut(s) 560, 625, 772
TaqI TCGA 2 cut(s) 324, 393
TatI WGTACW 1 cut(s) 1060
TfiI GAWTC 3 cut(s) 41, 577, 899
Tru1I TTAA 7 cut(s) 6, 36, 51, 71, 173, 330, 1052
Tru9I TTAA 7 cut(s) 6, 36, 51, 71, 173, 330, 1052
TscAI CASTG 2 cut(s) 340, 615
TseFI GTSAC 5 cut(s) 594, 618, 824, 1129, 1233
TseI GCWGC 2 cut(s) 161, 971
Tsp45I GTSAC 5 cut(s) 594, 618, 824, 1129, 1233
TspDTI ATGAA 6 cut(s) 96, 312, 803, 860, 896, 912
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 2 cut(s) 340, 615
VspI ATTAAT 1 cut(s) 1052
XagI CCTNNNNNAGG 2 cut(s) 230, 571
XapI RAATTY 5 cut(s) 32, 310, 657, 1247, 1273
XceI RCATGY 2 cut(s) 241, 1127
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 3 cut(s) 389, 870, 903
Zsp2I ATGCAT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.