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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 587 |
| AclWI | GGATC | 1 cut(s) | 125 |
| AcsI | RAATTY | 2 cut(s) | 215, 348 |
| AfaI | GTAC | 2 cut(s) | 262, 301 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 650 |
| AgsI | TTSAA | 5 cut(s) | 53, 145, 446, 482, 686 |
| AluBI | AGCT | 1 cut(s) | 702 |
| AluI | AGCT | 1 cut(s) | 702 |
| Alw26I | GTCTC | 2 cut(s) | 385, 599 |
| AlwI | GGATC | 1 cut(s) | 125 |
| ApoI | RAATTY | 2 cut(s) | 215, 348 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 257, 289 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 140 |
| AspS9I | GGNCC | 1 cut(s) | 273 |
| AsuHPI | GGTGA | 3 cut(s) | 250, 293, 306 |
| AvaII | GGWCC | 1 cut(s) | 273 |
| BanI | GGYRCC | 1 cut(s) | 587 |
| BanII | GRGCYC | 1 cut(s) | 550 |
| BccI | CCATC | 2 cut(s) | 517, 644 |
| BclI | TGATCA | 1 cut(s) | 538 |
| BcoDI | GTCTC | 2 cut(s) | 385, 599 |
| BlpI | GCTNAGC | 1 cut(s) | 110 |
| Bme18I | GGWCC | 1 cut(s) | 273 |
| BmgT120I | GGNCC | 1 cut(s) | 273 |
| BmiI | GGNNCC | 3 cut(s) | 274, 547, 589 |
| BmrI | ACTGGG | 1 cut(s) | 639 |
| BmsI | GCATC | 2 cut(s) | 562, 624 |
| BmuI | ACTGGG | 1 cut(s) | 639 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 110 |
| BsaI | GGTCTC | 1 cut(s) | 385 |
| BsaJI | CCNNGG | 2 cut(s) | 324, 374 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 650 |
| Bse1I | ACTGG | 1 cut(s) | 645 |
| Bse3DI | GCAATG | 1 cut(s) | 345 |
| BseDI | CCNNGG | 2 cut(s) | 324, 374 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 650 |
| BseMI | GCAATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 101 |
| BseNI | ACTGG | 1 cut(s) | 645 |
| BseRI | GAGGAG | 1 cut(s) | 578 |
| BshNI | GGYRCC | 1 cut(s) | 587 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 650 |
| BsmAI | GTCTC | 2 cut(s) | 385, 599 |
| BsmI | GAATGC | 1 cut(s) | 310 |
| Bso31I | GGTCTC | 1 cut(s) | 385 |
| Bsp1286I | GDGCHC | 1 cut(s) | 550 |
| Bsp143I | GATC | 4 cut(s) | 130, 189, 501, 538 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 110 |
| BspCNI | CTCAG | 1 cut(s) | 102 |
| BspHI | TCATGA | 1 cut(s) | 462 |
| BspLI | GGNNCC | 3 cut(s) | 274, 547, 589 |
| BspPI | GGATC | 1 cut(s) | 125 |
| BspT107I | GGYRCC | 1 cut(s) | 587 |
| BspTNI | GGTCTC | 1 cut(s) | 385 |
| BsrDI | GCAATG | 1 cut(s) | 345 |
| BsrI | ACTGG | 1 cut(s) | 645 |
| BssECI | CCNNGG | 2 cut(s) | 324, 374 |
| BssMI | GATC | 4 cut(s) | 130, 189, 501, 538 |
| Bst4CI | ACNGT | 6 cut(s) | 141, 154, 232, 260, 592, 621 |
| Bst6I | CTCTTC | 2 cut(s) | 388, 672 |
| BstC8I | GCNNGC | 1 cut(s) | 127 |
| BstDEI | CTNAG | 2 cut(s) | 110, 558 |
| BstKTI | GATC | 4 cut(s) | 133, 192, 504, 541 |
| BstMAI | GTCTC | 2 cut(s) | 385, 599 |
| BstMBI | GATC | 4 cut(s) | 130, 189, 501, 538 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BtsIMutI | CAGTG | 1 cut(s) | 652 |
| Cac8I | GCNNGC | 1 cut(s) | 127 |
| CciI | TCATGA | 1 cut(s) | 462 |
| Cfr13I | GGNCC | 1 cut(s) | 273 |
| Csp6I | GTAC | 2 cut(s) | 261, 300 |
| CviAII | CATG | 3 cut(s) | 463, 520, 578 |
| CviJI | RGCY | 4 cut(s) | 109, 509, 548, 702 |
| CviKI_1 | RGCY | 4 cut(s) | 109, 509, 548, 702 |
| CviQI | GTAC | 2 cut(s) | 261, 300 |
| DdeI | CTNAG | 2 cut(s) | 110, 558 |
| DpnI | GATC | 4 cut(s) | 132, 191, 503, 540 |
| DpnII | GATC | 4 cut(s) | 130, 189, 501, 538 |
| Eam1104I | CTCTTC | 2 cut(s) | 388, 672 |
| EarI | CTCTTC | 2 cut(s) | 388, 672 |
| Eco24I | GRGCYC | 1 cut(s) | 550 |
| Eco31I | GGTCTC | 1 cut(s) | 385 |
| Eco47I | GGWCC | 1 cut(s) | 273 |
| EcoT22I | ATGCAT | 2 cut(s) | 419, 639 |
| EcoT38I | GRGCYC | 1 cut(s) | 550 |
| FaeI | CATG | 3 cut(s) | 466, 523, 581 |
| FaiI | YATR | 9 cut(s) | 87, 116, 415, 419, 436, 464, 521, 579, 639 |
| FatI | CATG | 3 cut(s) | 462, 519, 577 |
| FbaI | TGATCA | 1 cut(s) | 538 |
| FriOI | GRGCYC | 1 cut(s) | 550 |
| Hin1II | CATG | 3 cut(s) | 466, 523, 581 |
| HincII | GTYRAC | 1 cut(s) | 624 |
| HindII | GTYRAC | 1 cut(s) | 624 |
| HinfI | GANTC | 4 cut(s) | 184, 284, 404, 554 |
| HpaI | GTTAAC | 1 cut(s) | 624 |
| HphI | GGTGA | 3 cut(s) | 250, 293, 306 |
| Hpy166II | GTNNAC | 1 cut(s) | 624 |
| Hpy188I | TCNGA | 9 cut(s) | 15, 135, 189, 256, 289, 325, 346, 367, 375 |
| Hpy188III | TCNNGA | 2 cut(s) | 193, 463 |
| Hpy8I | GTNNAC | 1 cut(s) | 624 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 460 |
| HpyCH4III | ACNGT | 6 cut(s) | 141, 154, 232, 260, 592, 621 |
| HpyCH4IV | ACGT | 1 cut(s) | 655 |
| HpyCH4V | TGCA | 4 cut(s) | 161, 310, 417, 637 |
| HpyF3I | CTNAG | 2 cut(s) | 110, 558 |
| HpySE526I | ACGT | 1 cut(s) | 655 |
| Hsp92II | CATG | 3 cut(s) | 466, 523, 581 |
| Ksp22I | TGATCA | 1 cut(s) | 538 |
| KspAI | GTTAAC | 1 cut(s) | 624 |
| Kzo9I | GATC | 4 cut(s) | 130, 189, 501, 538 |
| LmnI | GCTCC | 1 cut(s) | 545 |
| LpnPI | CCDG | 4 cut(s) | 9, 18, 139, 658 |
| LweI | GCATC | 2 cut(s) | 562, 624 |
| MaeII | ACGT | 1 cut(s) | 655 |
| MaeIII | GTNAC | 2 cut(s) | 91, 238 |
| MalI | GATC | 4 cut(s) | 132, 191, 503, 540 |
| MboI | GATC | 4 cut(s) | 130, 189, 501, 538 |
| MboII | GAAGA | 3 cut(s) | 375, 673, 689 |
| MhlI | GDGCHC | 1 cut(s) | 550 |
| MluCI | AATT | 4 cut(s) | 28, 215, 348, 449 |
| MlyI | GAGTC | 2 cut(s) | 193, 413 |
| MmeI | TCCRAC | 2 cut(s) | 372, 638 |
| MnlI | CCTC | 7 cut(s) | 168, 189, 319, 369, 499, 556, 688 |
| Mph1103I | ATGCAT | 2 cut(s) | 419, 639 |
| MroXI | GAANNNNTTC | 1 cut(s) | 140 |
| MseI | TTAA | 5 cut(s) | 18, 63, 219, 333, 623 |
| MslI | CAYNNNNRTG | 1 cut(s) | 582 |
| Mva1269I | GAATGC | 1 cut(s) | 310 |
| NdeII | GATC | 4 cut(s) | 130, 189, 501, 538 |
| NlaIII | CATG | 3 cut(s) | 466, 523, 581 |
| NlaIV | GGNNCC | 3 cut(s) | 274, 547, 589 |
| NmuCI | GTSAC | 2 cut(s) | 91, 238 |
| NsiI | ATGCAT | 2 cut(s) | 419, 639 |
| PagI | TCATGA | 1 cut(s) | 462 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 285 |
| PctI | GAATGC | 1 cut(s) | 310 |
| PdmI | GAANNNNTTC | 1 cut(s) | 140 |
| PfeI | GAWTC | 2 cut(s) | 284, 554 |
| PleI | GAGTC | 2 cut(s) | 192, 412 |
| PpsI | GAGTC | 2 cut(s) | 192, 412 |
| PspN4I | GGNNCC | 3 cut(s) | 274, 547, 589 |
| PspPI | GGNCC | 1 cut(s) | 273 |
| RsaI | GTAC | 2 cut(s) | 262, 301 |
| RsaNI | GTAC | 2 cut(s) | 261, 300 |
| RseI | CAYNNNNRTG | 1 cut(s) | 582 |
| SaqAI | TTAA | 5 cut(s) | 18, 63, 219, 333, 623 |
| Sau3AI | GATC | 4 cut(s) | 130, 189, 501, 538 |
| Sau96I | GGNCC | 1 cut(s) | 273 |
| SchI | GAGTC | 2 cut(s) | 193, 413 |
| SduI | GDGCHC | 1 cut(s) | 550 |
| SetI | ASST | 8 cut(s) | 106, 179, 240, 319, 471, 658, 699, 704 |
| SfaNI | GCATC | 2 cut(s) | 562, 624 |
| SinI | GGWCC | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 582 |
| Sse9I | AATT | 4 cut(s) | 28, 215, 348, 449 |
| TaaI | ACNGT | 6 cut(s) | 141, 154, 232, 260, 592, 621 |
| TaiI | ACGT | 1 cut(s) | 658 |
| TaqI | TCGA | 2 cut(s) | 192, 504 |
| TasI | AATT | 4 cut(s) | 28, 215, 348, 449 |
| TatI | WGTACW | 1 cut(s) | 299 |
| TfiI | GAWTC | 2 cut(s) | 284, 554 |
| Tru1I | TTAA | 5 cut(s) | 18, 63, 219, 333, 623 |
| Tru9I | TTAA | 5 cut(s) | 18, 63, 219, 333, 623 |
| TscAI | CASTG | 1 cut(s) | 652 |
| TseFI | GTSAC | 2 cut(s) | 91, 238 |
| Tsp45I | GTSAC | 2 cut(s) | 91, 238 |
| TspDTI | ATGAA | 4 cut(s) | 21, 375, 479, 690 |
| TspGWI | ACGGA | 2 cut(s) | 265, 558 |
| TspRI | CASTG | 1 cut(s) | 652 |
| VpaK11BI | GGWCC | 1 cut(s) | 273 |
| XapI | RAATTY | 2 cut(s) | 215, 348 |
| XmnI | GAANNNNTTC | 1 cut(s) | 140 |
| Zsp2I | ATGCAT | 2 cut(s) | 419, 639 |