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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 341 |
| AccII | CGCG | 1 cut(s) | 180 |
| AciI | CCGC | 3 cut(s) | 12, 138, 897 |
| AclWI | GGATC | 1 cut(s) | 35 |
| AcoI | YGGCCR | 1 cut(s) | 594 |
| AcsI | RAATTY | 2 cut(s) | 797, 932 |
| AfaI | GTAC | 1 cut(s) | 607 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 122, 377, 813 |
| AgsI | TTSAA | 4 cut(s) | 22, 238, 340, 575 |
| AjnI | CCWGG | 3 cut(s) | 328, 508, 586 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 640, 672 |
| AleI | CACNNNNGTG | 1 cut(s) | 315 |
| AluBI | AGCT | 4 cut(s) | 51, 112, 299, 793 |
| AluI | AGCT | 4 cut(s) | 51, 112, 299, 793 |
| Alw21I | GWGCWC | 3 cut(s) | 326, 398, 795 |
| Alw26I | GTCTC | 1 cut(s) | 905 |
| AlwI | GGATC | 1 cut(s) | 35 |
| AoxI | GGCC | 2 cut(s) | 511, 594 |
| ApeKI | GCWGC | 2 cut(s) | 112, 826 |
| ApoI | RAATTY | 2 cut(s) | 797, 932 |
| AspA2I | CCTAGG | 1 cut(s) | 313 |
| AspLEI | GCGC | 2 cut(s) | 8, 180 |
| AspS9I | GGNCC | 4 cut(s) | 105, 348, 590, 764 |
| AsuC2I | CCSGG | 1 cut(s) | 400 |
| AsuHPI | GGTGA | 2 cut(s) | 318, 698 |
| AvaII | GGWCC | 4 cut(s) | 105, 348, 590, 764 |
| AvrII | CCTAGG | 1 cut(s) | 313 |
| BanII | GRGCYC | 1 cut(s) | 795 |
| BbsI | GAAGAC | 2 cut(s) | 245, 969 |
| Bbv12I | GWGCWC | 3 cut(s) | 326, 398, 795 |
| BbvI | GCAGC | 2 cut(s) | 99, 838 |
| BccI | CCATC | 3 cut(s) | 529, 541, 740 |
| BciT130I | CCWGG | 3 cut(s) | 330, 510, 588 |
| BcnI | CCSGG | 1 cut(s) | 400 |
| BcoDI | GTCTC | 1 cut(s) | 905 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfoI | RGCGCY | 1 cut(s) | 9 |
| BisI | GCNGC | 2 cut(s) | 113, 827 |
| BlnI | CCTAGG | 1 cut(s) | 313 |
| BlsI | GCNGC | 2 cut(s) | 114, 828 |
| Bme1390I | CCNGG | 4 cut(s) | 330, 400, 510, 588 |
| Bme18I | GGWCC | 4 cut(s) | 105, 348, 590, 764 |
| BmgT120I | GGNCC | 4 cut(s) | 105, 348, 590, 764 |
| BmiI | GGNNCC | 4 cut(s) | 349, 507, 765, 766 |
| BmrFI | CCNGG | 4 cut(s) | 330, 400, 510, 588 |
| BmsI | GCATC | 1 cut(s) | 165 |
| BpiI | GAAGAC | 2 cut(s) | 245, 969 |
| BpuEI | CTTGAG | 1 cut(s) | 412 |
| BpuMI | CCSGG | 1 cut(s) | 400 |
| BsaI | GGTCTC | 1 cut(s) | 905 |
| BsaJI | CCNNGG | 2 cut(s) | 313, 329 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 688, 718 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 122, 377, 813 |
| Bse118I | RCCGGY | 1 cut(s) | 592 |
| Bse1I | ACTGG | 1 cut(s) | 737 |
| BseBI | CCWGG | 3 cut(s) | 330, 510, 588 |
| BseDI | CCNNGG | 2 cut(s) | 313, 329 |
| BseGI | GGATG | 3 cut(s) | 638, 676, 751 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 122, 377, 813 |
| BseMII | CTCAG | 2 cut(s) | 38, 903 |
| BseNI | ACTGG | 1 cut(s) | 737 |
| BseRI | GAGGAG | 4 cut(s) | 115, 176, 202, 803 |
| BseXI | GCAGC | 2 cut(s) | 99, 838 |
| Bsh1236I | CGCG | 1 cut(s) | 180 |
| BshFI | GGCC | 2 cut(s) | 513, 596 |
| BsiHKAI | GWGCWC | 3 cut(s) | 326, 398, 795 |
| BsiSI | CCGG | 4 cut(s) | 378, 399, 471, 593 |
| BslFI | GGGAC | 3 cut(s) | 347, 426, 777 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 122, 377, 813 |
| BsmAI | GTCTC | 1 cut(s) | 905 |
| BsmFI | GGGAC | 3 cut(s) | 347, 426, 777 |
| BsmI | GAATGC | 1 cut(s) | 922 |
| BsnI | GGCC | 2 cut(s) | 513, 596 |
| Bso31I | GGTCTC | 1 cut(s) | 905 |
| Bsp1286I | GDGCHC | 3 cut(s) | 326, 398, 795 |
| Bsp143I | GATC | 2 cut(s) | 40, 519 |
| BspACI | CCGC | 3 cut(s) | 12, 138, 897 |
| BspANI | GGCC | 2 cut(s) | 513, 596 |
| BspCNI | CTCAG | 2 cut(s) | 39, 904 |
| BspFNI | CGCG | 1 cut(s) | 180 |
| BspHI | TCATGA | 4 cut(s) | 390, 462, 543, 927 |
| BspLI | GGNNCC | 4 cut(s) | 349, 507, 765, 766 |
| BspPI | GGATC | 1 cut(s) | 35 |
| BspTNI | GGTCTC | 1 cut(s) | 905 |
| BsrFI | RCCGGY | 1 cut(s) | 592 |
| BsrI | ACTGG | 1 cut(s) | 737 |
| BssAI | RCCGGY | 1 cut(s) | 592 |
| BssECI | CCNNGG | 2 cut(s) | 313, 329 |
| BssMI | GATC | 2 cut(s) | 40, 519 |
| BssT1I | CCWWGG | 1 cut(s) | 313 |
| Bst2UI | CCWGG | 3 cut(s) | 330, 510, 588 |
| Bst4CI | ACNGT | 2 cut(s) | 230, 417 |
| Bst6I | CTCTTC | 4 cut(s) | 179, 249, 570, 846 |
| BstDEI | CTNAG | 3 cut(s) | 47, 52, 912 |
| BstF5I | GGATG | 3 cut(s) | 638, 676, 751 |
| BstFNI | CGCG | 1 cut(s) | 180 |
| BstH2I | RGCGCY | 1 cut(s) | 9 |
| BstHHI | GCGC | 2 cut(s) | 8, 180 |
| BstKTI | GATC | 2 cut(s) | 43, 522 |
| BstMAI | GTCTC | 1 cut(s) | 905 |
| BstMBI | GATC | 2 cut(s) | 40, 519 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 429 |
| BstNI | CCWGG | 3 cut(s) | 330, 510, 588 |
| BstSCI | CCNGG | 4 cut(s) | 328, 398, 508, 586 |
| BstUI | CGCG | 1 cut(s) | 180 |
| BstV1I | GCAGC | 2 cut(s) | 99, 838 |
| BstV2I | GAAGAC | 2 cut(s) | 245, 969 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 317 |
| BsuRI | GGCC | 2 cut(s) | 513, 596 |
| BtsCI | GGATG | 3 cut(s) | 638, 676, 751 |
| BtsIMutI | CAGTG | 2 cut(s) | 44, 744 |
| CciI | TCATGA | 4 cut(s) | 390, 462, 543, 927 |
| CfoI | GCGC | 2 cut(s) | 8, 180 |
| Cfr10I | RCCGGY | 1 cut(s) | 592 |
| Cfr13I | GGNCC | 4 cut(s) | 105, 348, 590, 764 |
| Csp6I | GTAC | 1 cut(s) | 606 |
| CviAII | CATG | 7 cut(s) | 391, 463, 544, 692, 770, 785, 928 |
| CviQI | GTAC | 1 cut(s) | 606 |
| DdeI | CTNAG | 3 cut(s) | 47, 52, 912 |
| DpnI | GATC | 2 cut(s) | 42, 521 |
| DpnII | GATC | 2 cut(s) | 40, 519 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 341 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 341 |
| EaeI | YGGCCR | 1 cut(s) | 594 |
| Eam1104I | CTCTTC | 4 cut(s) | 179, 249, 570, 846 |
| EarI | CTCTTC | 4 cut(s) | 179, 249, 570, 846 |
| Ecl136II | GAGCTC | 1 cut(s) | 793 |
| Eco130I | CCWWGG | 1 cut(s) | 313 |
| Eco24I | GRGCYC | 1 cut(s) | 795 |
| Eco31I | GGTCTC | 1 cut(s) | 905 |
| Eco47I | GGWCC | 4 cut(s) | 105, 348, 590, 764 |
| Eco53kI | GAGCTC | 1 cut(s) | 793 |
| EcoICRI | GAGCTC | 1 cut(s) | 793 |
| EcoO109I | RGGNCCY | 1 cut(s) | 764 |
| EcoRII | CCWGG | 3 cut(s) | 328, 508, 586 |
| EcoT14I | CCWWGG | 1 cut(s) | 313 |
| EcoT38I | GRGCYC | 1 cut(s) | 795 |
| ErhI | CCWWGG | 1 cut(s) | 313 |
| FaeI | CATG | 7 cut(s) | 394, 466, 547, 695, 773, 788, 931 |
| FaqI | GGGAC | 3 cut(s) | 347, 426, 777 |
| FatI | CATG | 7 cut(s) | 390, 462, 543, 691, 769, 784, 927 |
| Fnu4HI | GCNGC | 2 cut(s) | 113, 827 |
| FokI | GGATG | 3 cut(s) | 645, 683, 758 |
| FriOI | GRGCYC | 1 cut(s) | 795 |
| Fsp4HI | GCNGC | 2 cut(s) | 113, 827 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GlaI | GCGC | 2 cut(s) | 7, 179 |
| GluI | GCNGC | 2 cut(s) | 113, 827 |
| HaeII | RGCGCY | 1 cut(s) | 9 |
| HaeIII | GGCC | 2 cut(s) | 513, 596 |
| HapII | CCGG | 4 cut(s) | 378, 399, 471, 593 |
| HhaI | GCGC | 2 cut(s) | 8, 180 |
| Hin1II | CATG | 7 cut(s) | 394, 466, 547, 695, 773, 788, 931 |
| Hin6I | GCGC | 2 cut(s) | 6, 178 |
| HinP1I | GCGC | 2 cut(s) | 6, 178 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 8 cut(s) | 120, 126, 241, 359, 485, 578, 618, 838 |
| HpaII | CCGG | 4 cut(s) | 378, 399, 471, 593 |
| HphI | GGTGA | 2 cut(s) | 318, 698 |
| Hpy166II | GTNNAC | 2 cut(s) | 689, 869 |
| Hpy188I | TCNGA | 6 cut(s) | 40, 125, 249, 364, 564, 852 |
| Hpy188III | TCNNGA | 7 cut(s) | 130, 391, 445, 463, 544, 707, 928 |
| Hpy8I | GTNNAC | 2 cut(s) | 689, 869 |
| Hpy99I | CGWCG | 1 cut(s) | 347 |
| HpyAV | CCTTC | 1 cut(s) | 475 |
| HpyCH4III | ACNGT | 2 cut(s) | 230, 417 |
| HpyCH4IV | ACGT | 1 cut(s) | 342 |
| HpyCH4V | TGCA | 2 cut(s) | 890, 920 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 429 |
| HpyF3I | CTNAG | 3 cut(s) | 47, 52, 912 |
| HpySE526I | ACGT | 1 cut(s) | 342 |
| Hsp92II | CATG | 7 cut(s) | 394, 466, 547, 695, 773, 788, 931 |
| HspAI | GCGC | 2 cut(s) | 6, 178 |
| KflI | GGGWCCC | 1 cut(s) | 764 |
| Kzo9I | GATC | 2 cut(s) | 40, 519 |
| LmnI | GCTCC | 1 cut(s) | 790 |
| Lsp1109I | GCAGC | 2 cut(s) | 99, 838 |
| LweI | GCATC | 1 cut(s) | 165 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeII | ACGT | 1 cut(s) | 342 |
| MaeIII | GTNAC | 2 cut(s) | 732, 808 |
| MalI | GATC | 2 cut(s) | 42, 521 |
| MboI | GATC | 2 cut(s) | 40, 519 |
| MboII | GAAGA | 9 cut(s) | 196, 236, 250, 294, 587, 833, 865, 958, 974 |
| MhlI | GDGCHC | 3 cut(s) | 326, 398, 795 |
| MluCI | AATT | 7 cut(s) | 405, 474, 655, 722, 797, 882, 932 |
| MlyI | GAGTC | 4 cut(s) | 135, 235, 587, 832 |
| MseI | TTAA | 3 cut(s) | 408, 819, 942 |
| MslI | CAYNNNNRTG | 1 cut(s) | 315 |
| MspA1I | CMGCKG | 1 cut(s) | 140 |
| MspI | CCGG | 4 cut(s) | 378, 399, 471, 593 |
| MspR9I | CCNGG | 4 cut(s) | 330, 400, 510, 588 |
| Mva1269I | GAATGC | 1 cut(s) | 922 |
| MvaI | CCWGG | 3 cut(s) | 330, 510, 588 |
| MvnI | CGCG | 1 cut(s) | 180 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 429 |
| NciI | CCSGG | 1 cut(s) | 400 |
| NdeII | GATC | 2 cut(s) | 40, 519 |
| NlaIII | CATG | 7 cut(s) | 394, 466, 547, 695, 773, 788, 931 |
| NlaIV | GGNNCC | 4 cut(s) | 349, 507, 765, 766 |
| NmeAIII | GCCGAG | 1 cut(s) | 196 |
| NmuCI | GTSAC | 1 cut(s) | 808 |
| OliI | CACNNNNGTG | 1 cut(s) | 315 |
| PagI | TCATGA | 4 cut(s) | 390, 462, 543, 927 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 348 |
| PctI | GAATGC | 1 cut(s) | 922 |
| PfeI | GAWTC | 4 cut(s) | 120, 359, 485, 618 |
| PkrI | GCNGC | 2 cut(s) | 114, 828 |
| PleI | GAGTC | 4 cut(s) | 134, 235, 586, 832 |
| PpsI | GAGTC | 4 cut(s) | 134, 235, 586, 832 |
| PpuMI | RGGWCCY | 1 cut(s) | 764 |
| Psp124BI | GAGCTC | 1 cut(s) | 795 |
| Psp5II | RGGWCCY | 1 cut(s) | 764 |
| Psp6I | CCWGG | 3 cut(s) | 328, 508, 586 |
| PspGI | CCWGG | 3 cut(s) | 328, 508, 586 |
| PspN4I | GGNNCC | 4 cut(s) | 349, 507, 765, 766 |
| PspPI | GGNCC | 4 cut(s) | 105, 348, 590, 764 |
| PspPPI | RGGWCCY | 1 cut(s) | 764 |
| RsaI | GTAC | 1 cut(s) | 607 |
| RsaNI | GTAC | 1 cut(s) | 606 |
| RseI | CAYNNNNRTG | 1 cut(s) | 315 |
| SacI | GAGCTC | 1 cut(s) | 795 |
| SaqAI | TTAA | 3 cut(s) | 408, 819, 942 |
| SatI | GCNGC | 2 cut(s) | 113, 827 |
| Sau3AI | GATC | 2 cut(s) | 40, 519 |
| Sau96I | GGNCC | 4 cut(s) | 105, 348, 590, 764 |
| SchI | GAGTC | 4 cut(s) | 135, 235, 587, 832 |
| ScrFI | CCNGG | 4 cut(s) | 330, 400, 510, 588 |
| SduI | GDGCHC | 3 cut(s) | 326, 398, 795 |
| SfaNI | GCATC | 1 cut(s) | 165 |
| SinI | GGWCC | 4 cut(s) | 105, 348, 590, 764 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 1 cut(s) | 427 |
| SmoI | CTYRAG | 1 cut(s) | 427 |
| Sse9I | AATT | 7 cut(s) | 405, 474, 655, 722, 797, 882, 932 |
| SsiI | CCGC | 3 cut(s) | 12, 138, 897 |
| SspMI | CTAG | 1 cut(s) | 314 |
| SstI | GAGCTC | 1 cut(s) | 795 |
| StyD4I | CCNGG | 4 cut(s) | 328, 398, 508, 586 |
| StyI | CCWWGG | 1 cut(s) | 313 |
| TaaI | ACNGT | 2 cut(s) | 230, 417 |
| TaiI | ACGT | 1 cut(s) | 345 |
| TaqI | TCGA | 1 cut(s) | 419 |
| TaqII | GACCGA | 1 cut(s) | 122 |
| TasI | AATT | 7 cut(s) | 405, 474, 655, 722, 797, 882, 932 |
| TfiI | GAWTC | 4 cut(s) | 120, 359, 485, 618 |
| Tru1I | TTAA | 3 cut(s) | 408, 819, 942 |
| Tru9I | TTAA | 3 cut(s) | 408, 819, 942 |
| TscAI | CASTG | 2 cut(s) | 51, 744 |
| TseFI | GTSAC | 1 cut(s) | 808 |
| TseI | GCWGC | 2 cut(s) | 112, 826 |
| Tsp45I | GTSAC | 1 cut(s) | 808 |
| TspDTI | ATGAA | 3 cut(s) | 165, 532, 944 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| TspRI | CASTG | 2 cut(s) | 51, 744 |
| VpaK11BI | GGWCC | 4 cut(s) | 105, 348, 590, 764 |
| XapI | RAATTY | 2 cut(s) | 797, 932 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 521 |
| XmaJI | CCTAGG | 1 cut(s) | 313 |
| XspI | CTAG | 1 cut(s) | 314 |