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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 901 |
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 3 cut(s) | 203, 776, 873 |
| AcoI | YGGCCR | 2 cut(s) | 481, 639 |
| AcsI | RAATTY | 3 cut(s) | 107, 576, 746 |
| AcuI | CTGAAG | 2 cut(s) | 264, 431 |
| AfaI | GTAC | 2 cut(s) | 428, 456 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 443, 901 |
| AflIII | ACRYGT | 1 cut(s) | 855 |
| AgsI | TTSAA | 6 cut(s) | 221, 285, 344, 667, 723, 745 |
| AjnI | CCWGG | 1 cut(s) | 881 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 265, 297 |
| AluBI | AGCT | 5 cut(s) | 251, 277, 551, 590, 898 |
| AluI | AGCT | 5 cut(s) | 251, 277, 551, 590, 898 |
| Alw26I | GTCTC | 3 cut(s) | 164, 759, 819 |
| AlwI | GGATC | 3 cut(s) | 203, 776, 873 |
| AoxI | GGCC | 3 cut(s) | 481, 559, 639 |
| ApoI | RAATTY | 3 cut(s) | 107, 576, 746 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 406, 438 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 718 |
| AsuHPI | GGTGA | 2 cut(s) | 247, 640 |
| AxyI | CCTNAGG | 1 cut(s) | 438 |
| BalI | TGGCCA | 1 cut(s) | 483 |
| BanII | GRGCYC | 1 cut(s) | 306 |
| BauI | CACGAG | 1 cut(s) | 596 |
| BbsI | GAAGAC | 1 cut(s) | 419 |
| BccI | CCATC | 5 cut(s) | 46, 77, 182, 473, 551 |
| BciT130I | CCWGG | 1 cut(s) | 883 |
| BciVI | GTATCC | 1 cut(s) | 914 |
| BclI | TGATCA | 1 cut(s) | 607 |
| BcoDI | GTCTC | 3 cut(s) | 164, 759, 819 |
| BfaI | CTAG | 1 cut(s) | 458 |
| BfmI | CTRYAG | 1 cut(s) | 566 |
| BfuI | GTATCC | 1 cut(s) | 914 |
| Bme1390I | CCNGG | 1 cut(s) | 883 |
| BmiI | GGNNCC | 1 cut(s) | 303 |
| BmrFI | CCNGG | 1 cut(s) | 883 |
| BpiI | GAAGAC | 1 cut(s) | 419 |
| BsaBI | GATNNNNATC | 1 cut(s) | 890 |
| BsaJI | CCNNGG | 1 cut(s) | 465 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 443, 901 |
| Bse1I | ACTGG | 2 cut(s) | 95, 841 |
| Bse21I | CCTNAGG | 1 cut(s) | 438 |
| Bse8I | GATNNNNATC | 1 cut(s) | 890 |
| BseBI | CCWGG | 1 cut(s) | 883 |
| BseDI | CCNNGG | 1 cut(s) | 465 |
| BseJI | GATNNNNATC | 1 cut(s) | 890 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 443, 901 |
| BseMII | CTCAG | 1 cut(s) | 452 |
| BseNI | ACTGG | 2 cut(s) | 95, 841 |
| BseX3I | CGGCCG | 1 cut(s) | 639 |
| Bsh1285I | CGRYCG | 1 cut(s) | 642 |
| BshFI | GGCC | 3 cut(s) | 483, 561, 641 |
| BsiEI | CGRYCG | 1 cut(s) | 642 |
| BslFI | GGGAC | 1 cut(s) | 828 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 443, 901 |
| BsmAI | GTCTC | 3 cut(s) | 164, 759, 819 |
| BsmFI | GGGAC | 1 cut(s) | 828 |
| BsnI | GGCC | 3 cut(s) | 483, 561, 641 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp143I | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 3 cut(s) | 483, 561, 641 |
| BspCNI | CTCAG | 1 cut(s) | 451 |
| BspLI | GGNNCC | 1 cut(s) | 303 |
| BspMAI | CTGCAG | 1 cut(s) | 570 |
| BspPI | GGATC | 3 cut(s) | 203, 776, 873 |
| BsrI | ACTGG | 2 cut(s) | 95, 841 |
| BssECI | CCNNGG | 1 cut(s) | 465 |
| BssMI | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| BssSI | CACGAG | 1 cut(s) | 596 |
| BssT1I | CCWWGG | 1 cut(s) | 465 |
| Bst2BI | CACGAG | 1 cut(s) | 596 |
| Bst2UI | CCWGG | 1 cut(s) | 883 |
| Bst4CI | ACNGT | 2 cut(s) | 348, 431 |
| Bst6I | CTCTTC | 1 cut(s) | 92 |
| BstDEI | CTNAG | 2 cut(s) | 438, 507 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 441 |
| BstKTI | GATC | 5 cut(s) | 131, 198, 610, 784, 881 |
| BstMAI | GTCTC | 3 cut(s) | 164, 759, 819 |
| BstMBI | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| BstMCI | CGRYCG | 1 cut(s) | 642 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 937 |
| BstNI | CCWGG | 1 cut(s) | 883 |
| BstNSI | RCATGY | 2 cut(s) | 859, 874 |
| BstSCI | CCNGG | 1 cut(s) | 881 |
| BstSFI | CTRYAG | 1 cut(s) | 566 |
| BstV2I | GAAGAC | 1 cut(s) | 419 |
| BstX2I | RGATCY | 1 cut(s) | 878 |
| BstYI | RGATCY | 1 cut(s) | 878 |
| BstZI | CGGCCG | 1 cut(s) | 639 |
| Bsu36I | CCTNAGG | 1 cut(s) | 438 |
| BsuI | GTATCC | 1 cut(s) | 914 |
| BsuRI | GGCC | 3 cut(s) | 483, 561, 641 |
| BtsIMutI | CAGTG | 3 cut(s) | 212, 436, 834 |
| Csp6I | GTAC | 2 cut(s) | 427, 455 |
| CviAII | CATG | 6 cut(s) | 310, 361, 537, 829, 856, 871 |
| CviQI | GTAC | 2 cut(s) | 427, 455 |
| DdeI | CTNAG | 2 cut(s) | 438, 507 |
| DpnI | GATC | 5 cut(s) | 130, 197, 609, 783, 880 |
| DpnII | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| EaeI | YGGCCR | 2 cut(s) | 481, 639 |
| EagI | CGGCCG | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 1 cut(s) | 92 |
| EarI | CTCTTC | 1 cut(s) | 92 |
| EclXI | CGGCCG | 1 cut(s) | 639 |
| Eco130I | CCWWGG | 1 cut(s) | 465 |
| Eco24I | GRGCYC | 1 cut(s) | 306 |
| Eco52I | CGGCCG | 1 cut(s) | 639 |
| Eco57I | CTGAAG | 2 cut(s) | 264, 431 |
| Eco81I | CCTNAGG | 1 cut(s) | 438 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 441 |
| EcoRII | CCWGG | 1 cut(s) | 881 |
| EcoT14I | CCWWGG | 1 cut(s) | 465 |
| EcoT38I | GRGCYC | 1 cut(s) | 306 |
| ErhI | CCWWGG | 1 cut(s) | 465 |
| FaeI | CATG | 6 cut(s) | 313, 364, 540, 832, 859, 874 |
| FaqI | GGGAC | 1 cut(s) | 828 |
| FatI | CATG | 6 cut(s) | 309, 360, 536, 828, 855, 870 |
| FauNDI | CATATG | 1 cut(s) | 612 |
| FbaI | TGATCA | 1 cut(s) | 607 |
| FriOI | GRGCYC | 1 cut(s) | 306 |
| FspBI | CTAG | 1 cut(s) | 458 |
| HaeIII | GGCC | 3 cut(s) | 483, 561, 641 |
| Hin1II | CATG | 6 cut(s) | 313, 364, 540, 832, 859, 874 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HinfI | GANTC | 5 cut(s) | 380, 461, 635, 671, 731 |
| HphI | GGTGA | 2 cut(s) | 247, 640 |
| Hpy166II | GTNNAC | 1 cut(s) | 495 |
| Hpy188I | TCNGA | 6 cut(s) | 141, 200, 244, 358, 411, 583 |
| Hpy8I | GTNNAC | 1 cut(s) | 495 |
| HpyAV | CCTTC | 8 cut(s) | 215, 358, 572, 595, 619, 670, 721, 805 |
| HpyCH4III | ACNGT | 2 cut(s) | 348, 431 |
| HpyCH4IV | ACGT | 1 cut(s) | 933 |
| HpyCH4V | TGCA | 6 cut(s) | 205, 540, 568, 804, 874, 931 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 937 |
| HpyF3I | CTNAG | 2 cut(s) | 438, 507 |
| HpySE526I | ACGT | 1 cut(s) | 933 |
| Hsp92II | CATG | 6 cut(s) | 313, 364, 540, 832, 859, 874 |
| Ksp22I | TGATCA | 1 cut(s) | 607 |
| Kzo9I | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| LmnI | GCTCC | 2 cut(s) | 301, 595 |
| LpnPI | CCDG | 8 cut(s) | 76, 218, 425, 799, 822, 868, 895, 908 |
| MaeI | CTAG | 1 cut(s) | 458 |
| MaeII | ACGT | 1 cut(s) | 933 |
| MaeIII | GTNAC | 1 cut(s) | 628 |
| MalI | GATC | 5 cut(s) | 130, 197, 609, 783, 880 |
| MboI | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| MboII | GAAGA | 5 cut(s) | 106, 109, 114, 424, 820 |
| MflI | RGATCY | 1 cut(s) | 878 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MlsI | TGGCCA | 1 cut(s) | 483 |
| MluCI | AATT | 5 cut(s) | 107, 339, 487, 576, 746 |
| MluNI | TGGCCA | 1 cut(s) | 483 |
| MlyI | GAGTC | 2 cut(s) | 665, 725 |
| MnlI | CCTC | 3 cut(s) | 10, 447, 463 |
| Mox20I | TGGCCA | 1 cut(s) | 483 |
| MroXI | GAANNNNTTC | 1 cut(s) | 718 |
| MscI | TGGCCA | 1 cut(s) | 483 |
| MseI | TTAA | 2 cut(s) | 402, 681 |
| MslI | CAYNNNNRTG | 2 cut(s) | 799, 860 |
| Msp20I | TGGCCA | 1 cut(s) | 483 |
| MspR9I | CCNGG | 1 cut(s) | 883 |
| MvaI | CCWGG | 1 cut(s) | 883 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 937 |
| NdeI | CATATG | 1 cut(s) | 612 |
| NdeII | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| NlaIII | CATG | 6 cut(s) | 313, 364, 540, 832, 859, 874 |
| NlaIV | GGNNCC | 1 cut(s) | 303 |
| NmuCI | GTSAC | 1 cut(s) | 628 |
| NspI | RCATGY | 2 cut(s) | 859, 874 |
| PciI | ACATGT | 1 cut(s) | 855 |
| PdmI | GAANNNNTTC | 1 cut(s) | 718 |
| PfeI | GAWTC | 3 cut(s) | 380, 461, 635 |
| PflFI | GACNNNGTC | 1 cut(s) | 912 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 901 |
| PfoI | TCCNGGA | 1 cut(s) | 881 |
| PleI | GAGTC | 2 cut(s) | 665, 725 |
| PpsI | GAGTC | 2 cut(s) | 665, 725 |
| PscI | ACATGT | 1 cut(s) | 855 |
| Psp6I | CCWGG | 1 cut(s) | 881 |
| PspGI | CCWGG | 1 cut(s) | 881 |
| PspN4I | GGNNCC | 1 cut(s) | 303 |
| PstI | CTGCAG | 1 cut(s) | 570 |
| PsuI | RGATCY | 1 cut(s) | 878 |
| PsyI | GACNNNGTC | 1 cut(s) | 912 |
| RsaI | GTAC | 2 cut(s) | 428, 456 |
| RsaNI | GTAC | 2 cut(s) | 427, 455 |
| RseI | CAYNNNNRTG | 2 cut(s) | 799, 860 |
| SaqAI | TTAA | 2 cut(s) | 402, 681 |
| Sau3AI | GATC | 5 cut(s) | 128, 195, 607, 781, 878 |
| SchI | GAGTC | 2 cut(s) | 665, 725 |
| ScrFI | CCNGG | 1 cut(s) | 883 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SfcI | CTRYAG | 1 cut(s) | 566 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 799, 860 |
| Sse9I | AATT | 5 cut(s) | 107, 339, 487, 576, 746 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspMI | CTAG | 1 cut(s) | 458 |
| StyD4I | CCNGG | 1 cut(s) | 881 |
| StyI | CCWWGG | 1 cut(s) | 465 |
| TaaI | ACNGT | 2 cut(s) | 348, 431 |
| TaiI | ACGT | 1 cut(s) | 936 |
| TaqI | TCGA | 1 cut(s) | 674 |
| TasI | AATT | 5 cut(s) | 107, 339, 487, 576, 746 |
| TfiI | GAWTC | 3 cut(s) | 380, 461, 635 |
| Tru1I | TTAA | 2 cut(s) | 402, 681 |
| Tru9I | TTAA | 2 cut(s) | 402, 681 |
| TscAI | CASTG | 3 cut(s) | 219, 436, 841 |
| TseFI | GTSAC | 1 cut(s) | 628 |
| Tsp45I | GTSAC | 1 cut(s) | 628 |
| TspDTI | ATGAA | 3 cut(s) | 377, 587, 783 |
| TspGWI | ACGGA | 3 cut(s) | 45, 693, 786 |
| TspRI | CASTG | 3 cut(s) | 219, 436, 841 |
| Tth111I | GACNNNGTC | 1 cut(s) | 912 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 901 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 441 |
| XapI | RAATTY | 3 cut(s) | 107, 576, 746 |
| XceI | RCATGY | 2 cut(s) | 859, 874 |
| XmnI | GAANNNNTTC | 1 cut(s) | 718 |
| XspI | CTAG | 1 cut(s) | 458 |