RchiOBHm_Chr3g0478081

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000030
Physical Location & Seq
Reverse (-)
23934582 .. 23937864
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44332

Sequence Viewer

Length: 2289 bp
ATGTGTAGGGGGGCTGGCACAAATAATTCGATGCTTACATTAAAATCATCATCGGGCTGTACAAAGGAGACAGGTTGTTCCCTTGAAGACTCCATTGGACATGATGTTGGGCAGACTAAATTGGATAAGTGTGATGTCATACCTGGAGACTGTCCGGTGAGTCCCATAGTAGGTCGACGCATGAGGGAATTTAGATCAATATGTACTGGATTGTCAGAAGAGAAGAAAATAGCTATAGATGCAACGGGTTTTGGGGCTATATTCACGTTCAGGTGCAGCGAACTGAACGTCCTTTTATGCCACATGATGTGCAACAACTTTGATGTCGAAAACTCAACGATCAAGATTCCTGGGAGACATTTAACGGTGACCGCTGAAGATTTCCGCCATGTCATGAGTGTAAGGGATGGTGGGGGTGACGTAGATTTAACAGGAAGCTTGGCTGAACCTGACATTGTTCAGTTGAAGTCTAAATTTTGTGGTGTTGAGGACGAAATAAGCTTGGAAGTTGTGGGGAAGATGGTGGTTGAATCAGAAACTGCCGATGAAACATTTGTAATAAGTTTATGTCTTTATGCCCTGTCAACTATTATTTTCCCAATTGAAAGTGATGCAGTGGATCCGAGGCTGCTTCTCGCCCTAAAGGATCCAAAAACAATTAGCACAAAAAACTGGGCGTCCTTTGCATTAAGAAATCTTGTTGAAGGAGTTGGAAGGTATAAGAATGGGGTGTCATCAACTGTGAATGGATGTATTGCATTTCTGCAGCTTTTCTATTTGGATGCAATGCTAATGAAGTTCCTAGTTATTCCGACATACACATCTCCGGTACTATGTTGGAATAACAAGCAAGCAAGAATTATGTATGATCAAGCAGAGGCTAATGGTGGGTATTACTCGACTGGTATAATAGCGACCAAGCGTTGGTCCACCACTCGATTCCTAGATAATGTCGGATCTGTTGATGCAAGAACAGGACTGAAAACAACTATTGTTGAAGATCTACACAAGGTTAGGAATGATGTTGATGCTTTCAAATGCGAATTTCAGGAGGTTAGATCCTGCATATCTCATATAGAACCGGATATGGTTGGGCTCCGCAATGCTATTATGACACTGCAAGCATCTATTTCTGAAATGAGGGAGAGAGGGATTAGTAACATGGTTGTAGAAGTGATGAAGGAAGTTCTTGATGAGGAGGGTCCGAGTGACCAAAAAGGGGGGGATGAATTAGATATGTATGAAGATGACATAGTTCCTCGTCAGACGGGGTCGCCAAGTGTCGGTTGGCGTCATCAACCTAATATGGTTGATATGGACGACAAAAGGTTCTCGTTGAAGCGAAAATCAACCAACGAAAGCATGGAACATGATGATATGGTGAAATTCTGTGAAGTTGCTGATATATCGAACAGTGAATCGTTTTTGATTACTTACTTGTTCAGCAAGGTGATGACTGAGTGTGACAGTCTTGGAAGTCGGGAGATTGCAAGGTATGGAGATCATAGTATCTCTAGATGGGACCTAGGTTGCCTTTCACCGATGCAGTGTATCACAAGTCACATTGTAGACATATCTGTTTTGTACCTATTTGACAAACAAAGCGACATATGGTTCATGCCCACATATTTCTCGGAACGTGCTAAGGATTACGCAAGTGGCAGTGTTGTGGACGGTCTGGTATCGTCTGTGGTGACTATATGTCGGCTTCGTAGATATAGTGGCCGATTGGGTTCGTACAAGCAGATTTTCTTCCCTCTGCAAGACGATGTTGTGGATAACTGGTTTTTGGTTGTTTTCAACCCGGATGAGGGAGAATGTGAGATTTGGGACAGCTGCCCCGACAAGGATGCTAGAGAGCGTCATGAGGCTTATGCAAATGGTGTGATGGAGCTTTTTCAGAAGGTTTTCTGTAATCAAATCAGACTACTTCCTGCATTGTATGCAAGACTAGCATCTGTGTGCACAGTTTATCCTAAAGAAGCCCCAACCAACGGAAAGACCGAGGATTCTGGTATATTTTTAATCAGGAACATGCAGTATTACCGGAAACGTTGGTTTGAAGGGTTCAACTCCGCCGACCAGAGGATCCGGCTTGCTCTTGACATAGTCAATCATCCAATGAATGCAGTACGCGTTTCTGTATGGGCAGCAGCAGCTCAGGAAACTCCAATTGATGCAAAATCACTTGGACGAGCAGCGTACAACGGGAACTTCATCCGAAATCGCCATATCCCACTTGATATTTCAGGAATCAAATTTAAGGCTCGTCGCACTGCAAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

762

Amino Acids

85.55

Weight (kDa)

5.46

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 924
AccI GTMKAC 2 cut(s) 175, 1569
AccII CGCG 1 cut(s) 2136
AciI CCGC 4 cut(s) 372, 385, 1099, 2076
AclI AACGTT 1 cut(s) 2053
AclWI GGATC 8 cut(s) 614, 627, 641, 654, 964, 1053, 2083, 2096
AcoI YGGCCR 1 cut(s) 1723
AcsI RAATTY 5 cut(s) 188, 473, 1043, 1385, 2258
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 2 cut(s) 677, 1291
AfaI GTAC 7 cut(s) 61, 205, 831, 1586, 1739, 2133, 2204
AfiI CCNNNNNNNGG 9 cut(s) 170, 924, 1219, 1283, 1810, 1811, 1846, 1994, 2085
AflIII ACRYGT 1 cut(s) 2134
AhdI GACNNNNNGTC 1 cut(s) 1701
AjnI CCWGG 2 cut(s) 142, 349
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 7 cut(s) 233, 438, 501, 769, 1836, 1894, 2159
AluI AGCT 7 cut(s) 233, 438, 501, 769, 1836, 1894, 2159
Alw21I GWGCWC 1 cut(s) 1967
Alw26I GTCTC 3 cut(s) 62, 141, 349
Alw44I GTGCAC 1 cut(s) 1963
AlwI GGATC 8 cut(s) 614, 627, 641, 654, 964, 1053, 2083, 2096
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 1 cut(s) 1723
ApaLI GTGCAC 1 cut(s) 1963
ApeKI GCWGC 8 cut(s) 276, 628, 766, 1836, 2150, 2153, 2156, 2198
ApoI RAATTY 5 cut(s) 188, 473, 1043, 1385, 2258
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
Asp700I GAANNNNTTC 1 cut(s) 1907
AspA2I CCTAGG 1 cut(s) 1525
AspS9I GGNCC 3 cut(s) 927, 1202, 1522
AsuC2I CCSGG 1 cut(s) 1805
AsuHPI GGTGA 7 cut(s) 169, 379, 428, 1393, 1462, 1530, 1705
AvaII GGWCC 3 cut(s) 927, 1202, 1522
AvrII CCTAGG 1 cut(s) 1525
BaeGI GKGCMC 1 cut(s) 1967
BamHI GGATCC 3 cut(s) 619, 646, 2088
BanII GRGCYC 1 cut(s) 1098
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 1967
BbvI GCAGC 8 cut(s) 288, 615, 778, 1823, 2162, 2165, 2168, 2210
BccI CCATC 4 cut(s) 401, 514, 1512, 1882
BcgI CGANNNNNNTGC 2 cut(s) 1832, 1866
BciT130I CCWGG 2 cut(s) 144, 351
BclI TGATCA 1 cut(s) 868
BcnI CCSGG 1 cut(s) 1805
BcoDI GTCTC 3 cut(s) 62, 141, 349
BfaI CTAG 6 cut(s) 803, 944, 1515, 1526, 1854, 1952
BfmI CTRYAG 2 cut(s) 234, 764
BglII AGATCT 1 cut(s) 1000
BisI GCNGC 8 cut(s) 277, 629, 767, 1837, 2151, 2154, 2157, 2199
BlnI CCTAGG 1 cut(s) 1525
BlsI GCNGC 8 cut(s) 278, 630, 768, 1838, 2152, 2155, 2158, 2200
Bme1390I CCNGG 3 cut(s) 144, 351, 1805
Bme18I GGWCC 3 cut(s) 927, 1202, 1522
BmeRI GACNNNNNGTC 1 cut(s) 1701
BmgT120I GGNCC 3 cut(s) 927, 1202, 1522
BmiI GGNNCC 6 cut(s) 621, 648, 1097, 1203, 1523, 2090
BmrFI CCNGG 3 cut(s) 144, 351, 1805
BmrI ACTGGG 1 cut(s) 682
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 2 cut(s) 1644, 2160
BpuMI CCSGG 1 cut(s) 1805
BsaHI GRCGYC 2 cut(s) 677, 1291
BsaJI CCNNGG 4 cut(s) 350, 623, 1525, 2004
BsaWI WCCGGW 4 cut(s) 154, 826, 1081, 2046
Bsc4I CCNNNNNNNGG 9 cut(s) 170, 924, 1219, 1283, 1810, 1811, 1846, 1994, 2085
Bse1I ACTGG 4 cut(s) 211, 677, 907, 1787
Bse3DI GCAATG 2 cut(s) 792, 1108
BseBI CCWGG 2 cut(s) 144, 351
BseDI CCNNGG 4 cut(s) 350, 623, 1525, 2004
BseGI GGATG 8 cut(s) 412, 755, 787, 1231, 1813, 1855, 2116, 2217
BseLI CCNNNNNNNGG 9 cut(s) 170, 924, 1219, 1283, 1810, 1811, 1846, 1994, 2085
BseMI GCAATG 2 cut(s) 792, 1108
BseMII CTCAG 2 cut(s) 1449, 2174
BseNI ACTGG 4 cut(s) 211, 677, 907, 1787
BseRI GAGGAG 1 cut(s) 1211
BseSI GKGCMC 1 cut(s) 1967
BseXI GCAGC 8 cut(s) 288, 615, 778, 1823, 2162, 2165, 2168, 2210
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 2136
BshFI GGCC 1 cut(s) 1725
BsiHKAI GWGCWC 1 cut(s) 1967
BsiSI CCGG 6 cut(s) 155, 827, 1082, 1805, 2047, 2092
BslFI GGGAC 3 cut(s) 147, 1535, 1844
BslI CCNNNNNNNGG 9 cut(s) 170, 924, 1219, 1283, 1810, 1811, 1846, 1994, 2085
BsmAI GTCTC 3 cut(s) 62, 141, 349
BsmFI GGGAC 3 cut(s) 147, 1535, 1844
BsmI GAATGC 1 cut(s) 2131
BsnI GGCC 1 cut(s) 1725
Bsp1286I GDGCHC 2 cut(s) 1098, 1967
Bsp1407I TGTACA 1 cut(s) 59
BspACI CCGC 4 cut(s) 372, 385, 1099, 2076
BspANI GGCC 1 cut(s) 1725
BspCNI CTCAG 2 cut(s) 1450, 2173
BspFNI CGCG 1 cut(s) 2136
BspHI TCATGA 2 cut(s) 393, 1864
BspLI GGNNCC 6 cut(s) 621, 648, 1097, 1203, 1523, 2090
BspMAI CTGCAG 1 cut(s) 768
BspPI GGATC 8 cut(s) 614, 627, 641, 654, 964, 1053, 2083, 2096
BsrDI GCAATG 2 cut(s) 792, 1108
BsrGI TGTACA 1 cut(s) 59
BsrI ACTGG 4 cut(s) 211, 677, 907, 1787
BssECI CCNNGG 4 cut(s) 350, 623, 1525, 2004
BssNI GRCGYC 2 cut(s) 677, 1291
BssT1I CCWWGG 1 cut(s) 1525
Bst2UI CCWGG 2 cut(s) 144, 351
Bst4CI ACNGT 7 cut(s) 152, 367, 742, 1415, 1469, 1676, 1969
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 2 cut(s) 677, 1291
BstAPI GCANNNNNTGC 1 cut(s) 1943
BstAUI TGTACA 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 16, 852, 1122, 2097
BstDEI CTNAG 3 cut(s) 1458, 1644, 2160
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 8 cut(s) 412, 755, 787, 1231, 1813, 1855, 2116, 2217
BstFNI CGCG 1 cut(s) 2136
BstMAI GTCTC 3 cut(s) 62, 141, 349
BstMWI GCNNNNNNNGC 5 cut(s) 239, 683, 1943, 1952, 2156
BstNI CCWGG 2 cut(s) 144, 351
BstNSI RCATGY 1 cut(s) 2038
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 142, 349, 1803
BstSFI CTRYAG 2 cut(s) 234, 764
BstSLI GKGCMC 1 cut(s) 1967
BstUI CGCG 1 cut(s) 2136
BstV1I GCAGC 8 cut(s) 288, 615, 778, 1823, 2162, 2165, 2168, 2210
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 6 cut(s) 619, 646, 956, 1000, 1058, 2088
BstYI RGATCY 6 cut(s) 619, 646, 956, 1000, 1058, 2088
BsuRI GGCC 1 cut(s) 1725
BtsCI GGATG 8 cut(s) 412, 755, 787, 1231, 1813, 1855, 2116, 2217
BtsI GCAGTG 5 cut(s) 621, 1115, 1553, 1669, 2274
BtsIMutI CAGTG 7 cut(s) 621, 1115, 1420, 1553, 1669, 2274, 2284
Cac8I GCNNGC 4 cut(s) 16, 852, 1122, 2097
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 2 cut(s) 393, 1864
Cfr13I GGNCC 3 cut(s) 927, 1202, 1522
CseI GACGC 4 cut(s) 186, 666, 1280, 1850
Csp6I GTAC 7 cut(s) 60, 204, 830, 1585, 1738, 2132, 2203
CviQI GTAC 7 cut(s) 60, 204, 830, 1585, 1738, 2132, 2203
DdeI CTNAG 3 cut(s) 1458, 1644, 2160
DriI GACNNNNNGTC 1 cut(s) 1701
EaeI YGGCCR 1 cut(s) 1723
Eam1104I CTCTTC 1 cut(s) 213
Eam1105I GACNNNNNGTC 1 cut(s) 1701
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 2 cut(s) 374, 2065
Eco130I CCWWGG 1 cut(s) 1525
Eco24I GRGCYC 1 cut(s) 1098
Eco47I GGWCC 3 cut(s) 927, 1202, 1522
Eco57I CTGAAG 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 1522
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 142, 349
EcoT14I CCWWGG 1 cut(s) 1525
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 1525
FaqI GGGAC 3 cut(s) 147, 1535, 1844
FauNDI CATATG 1 cut(s) 1610
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 2 cut(s) 175, 1569
Fnu4HI GCNGC 8 cut(s) 277, 629, 767, 1837, 2151, 2154, 2157, 2199
FokI GGATG 8 cut(s) 419, 762, 794, 1238, 1820, 1862, 2103, 2204
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 8 cut(s) 277, 629, 767, 1837, 2151, 2154, 2157, 2199
FspBI CTAG 6 cut(s) 803, 944, 1515, 1526, 1854, 1952
GluI GCNGC 8 cut(s) 277, 629, 767, 1837, 2151, 2154, 2157, 2199
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 1725
HapII CCGG 6 cut(s) 155, 827, 1082, 1805, 2047, 2092
HgaI GACGC 4 cut(s) 186, 666, 1280, 1850
Hin1I GRCGYC 2 cut(s) 677, 1291
HincII GTYRAC 2 cut(s) 176, 585
HindII GTYRAC 2 cut(s) 176, 585
HindIII AAGCTT 2 cut(s) 436, 499
HinfI GANTC 8 cut(s) 89, 160, 346, 530, 939, 1418, 2009, 2253
HpaII CCGG 6 cut(s) 155, 827, 1082, 1805, 2047, 2092
HphI GGTGA 7 cut(s) 169, 379, 428, 1393, 1462, 1530, 1705
Hpy166II GTNNAC 6 cut(s) 176, 585, 930, 1570, 1672, 1965
Hpy8I GTNNAC 6 cut(s) 176, 585, 930, 1570, 1672, 1965
Hpy99I CGWCG 2 cut(s) 180, 2274
HpyAV CCTTC 5 cut(s) 698, 708, 1174, 1897, 2057
HpyCH4III ACNGT 7 cut(s) 152, 367, 742, 1415, 1469, 1676, 1969
HpyCH4IV ACGT 5 cut(s) 266, 288, 420, 1639, 2053
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 683, 1943, 1952, 2156
HpyF3I CTNAG 3 cut(s) 1458, 1644, 2160
HpySE526I ACGT 5 cut(s) 266, 288, 420, 1639, 2053
Hsp92I GRCGYC 2 cut(s) 677, 1291
Ksp22I TGATCA 1 cut(s) 868
LmnI GCTCC 2 cut(s) 1101, 1891
Lsp1109I GCAGC 8 cut(s) 288, 615, 778, 1823, 2162, 2165, 2168, 2210
MaeI CTAG 6 cut(s) 803, 944, 1515, 1526, 1854, 1952
MaeII ACGT 5 cut(s) 266, 288, 420, 1639, 2053
MaeIII GTNAC 7 cut(s) 367, 416, 1157, 1208, 1463, 1559, 1693
MboII GAAGA 8 cut(s) 98, 230, 235, 389, 529, 1010, 1256, 1744
MfeI CAATTG 2 cut(s) 600, 2172
MflI RGATCY 6 cut(s) 619, 646, 956, 1000, 1058, 2088
MhlI GDGCHC 2 cut(s) 1098, 1967
MluI ACGCGT 1 cut(s) 2134
MlyI GAGTC 2 cut(s) 83, 169
MmeI TCCRAC 4 cut(s) 691, 818, 836, 934
MroXI GAANNNNTTC 1 cut(s) 1907
MseI TTAA 6 cut(s) 41, 362, 428, 689, 2024, 2262
MslI CAYNNNNRTG 1 cut(s) 1960
MspA1I CMGCKG 2 cut(s) 374, 1836
MspI CCGG 6 cut(s) 155, 827, 1082, 1805, 2047, 2092
MspR9I CCNGG 3 cut(s) 144, 351, 1805
MunI CAATTG 2 cut(s) 600, 2172
Mva1269I GAATGC 1 cut(s) 2131
MvaI CCWGG 2 cut(s) 144, 351
MvnI CGCG 1 cut(s) 2136
MwoI GCNNNNNNNGC 5 cut(s) 239, 683, 1943, 1952, 2156
NciI CCSGG 1 cut(s) 1805
NdeI CATATG 1 cut(s) 1610
NlaIV GGNNCC 6 cut(s) 621, 648, 1097, 1203, 1523, 2090
NmuCI GTSAC 6 cut(s) 367, 416, 1208, 1463, 1559, 1693
NspI RCATGY 1 cut(s) 2038
PagI TCATGA 2 cut(s) 393, 1864
PcsI WCGNNNNNNNCGW 1 cut(s) 2001
PctI GAATGC 1 cut(s) 2131
PdmI GAANNNNTTC 1 cut(s) 1907
PfeI GAWTC 6 cut(s) 346, 530, 939, 1418, 2009, 2253
PflFI GACNNNGTC 2 cut(s) 1270, 2108
PflMI CCANNNNNTGG 1 cut(s) 924
PkrI GCNGC 8 cut(s) 278, 630, 768, 1838, 2152, 2155, 2158, 2200
PleI GAGTC 2 cut(s) 83, 168
PpsI GAGTC 2 cut(s) 83, 168
PpuMI RGGWCCY 1 cut(s) 1522
Psp1406I AACGTT 1 cut(s) 2053
Psp5II RGGWCCY 1 cut(s) 1522
Psp6I CCWGG 2 cut(s) 142, 349
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 2 cut(s) 142, 349
PspN4I GGNNCC 6 cut(s) 621, 648, 1097, 1203, 1523, 2090
PspPI GGNCC 3 cut(s) 927, 1202, 1522
PspPPI RGGWCCY 1 cut(s) 1522
PstI CTGCAG 1 cut(s) 768
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 6 cut(s) 619, 646, 956, 1000, 1058, 2088
PsyI GACNNNGTC 2 cut(s) 1270, 2108
PvuII CAGCTG 1 cut(s) 1836
RsaI GTAC 7 cut(s) 61, 205, 831, 1586, 1739, 2133, 2204
RsaNI GTAC 7 cut(s) 60, 204, 830, 1585, 1738, 2132, 2203
RseI CAYNNNNRTG 1 cut(s) 1960
SalI GTCGAC 1 cut(s) 174
SaqAI TTAA 6 cut(s) 41, 362, 428, 689, 2024, 2262
SatI GCNGC 8 cut(s) 277, 629, 767, 1837, 2151, 2154, 2157, 2199
Sau96I GGNCC 3 cut(s) 927, 1202, 1522
SchI GAGTC 2 cut(s) 83, 169
ScrFI CCNGG 3 cut(s) 144, 351, 1805
SduI GDGCHC 2 cut(s) 1098, 1967
SfcI CTRYAG 2 cut(s) 234, 764
SinI GGWCC 3 cut(s) 927, 1202, 1522
SmiMI CAYNNNNRTG 1 cut(s) 1960
SsiI CCGC 4 cut(s) 372, 385, 1099, 2076
SspMI CTAG 6 cut(s) 803, 944, 1515, 1526, 1854, 1952
StyD4I CCNGG 3 cut(s) 142, 349, 1803
StyI CCWWGG 1 cut(s) 1525
TaaI ACNGT 7 cut(s) 152, 367, 742, 1415, 1469, 1676, 1969
TaiI ACGT 5 cut(s) 269, 291, 423, 1642, 2056
TaqI TCGA 6 cut(s) 29, 175, 327, 899, 937, 1409
TaqII GACCGA 1 cut(s) 2018
TatI WGTACW 2 cut(s) 59, 203
TfiI GAWTC 6 cut(s) 346, 530, 939, 1418, 2009, 2253
Tru1I TTAA 6 cut(s) 41, 362, 428, 689, 2024, 2262
Tru9I TTAA 6 cut(s) 41, 362, 428, 689, 2024, 2262
TscAI CASTG 6 cut(s) 621, 1122, 1420, 1553, 1669, 2281
TseFI GTSAC 6 cut(s) 367, 416, 1208, 1463, 1559, 1693
TseI GCWGC 8 cut(s) 276, 628, 766, 1836, 2150, 2153, 2156, 2198
Tsp45I GTSAC 6 cut(s) 367, 416, 1208, 1463, 1559, 1693
TspDTI ATGAA 8 cut(s) 561, 809, 1193, 1242, 1257, 1606, 2138, 2206
TspGWI ACGGA 1 cut(s) 2010
TspRI CASTG 6 cut(s) 621, 1122, 1420, 1553, 1669, 2281
Tth111I GACNNNGTC 2 cut(s) 1270, 2108
Van91I CCANNNNNTGG 1 cut(s) 924
VneI GTGCAC 1 cut(s) 1963
VpaK11BI GGWCC 3 cut(s) 927, 1202, 1522
XapI RAATTY 5 cut(s) 188, 473, 1043, 1385, 2258
XbaI TCTAGA 1 cut(s) 1514
XceI RCATGY 1 cut(s) 2038
XcmI CCANNNNNNNNNTGG 2 cut(s) 1284, 1360
XmaJI CCTAGG 1 cut(s) 1525
XmiI GTMKAC 2 cut(s) 175, 1569
XmnI GAANNNNTTC 1 cut(s) 1907
XspI CTAG 6 cut(s) 803, 944, 1515, 1526, 1854, 1952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.