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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 218 |
| AciI | CCGC | 5 cut(s) | 446, 456, 605, 629, 680 |
| AcoI | YGGCCR | 1 cut(s) | 699 |
| AcsI | RAATTY | 2 cut(s) | 109, 164 |
| AfaI | GTAC | 2 cut(s) | 178, 320 |
| AgsI | TTSAA | 3 cut(s) | 297, 382, 473 |
| AjnI | CCWGG | 1 cut(s) | 573 |
| AluBI | AGCT | 3 cut(s) | 281, 464, 538 |
| AluI | AGCT | 3 cut(s) | 281, 464, 538 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 2 cut(s) | 185, 205 |
| AoxI | GGCC | 2 cut(s) | 482, 699 |
| ApaI | GGGCCC | 1 cut(s) | 486 |
| ApeKI | GCWGC | 1 cut(s) | 213 |
| ApoI | RAATTY | 2 cut(s) | 109, 164 |
| AseI | ATTAAT | 2 cut(s) | 117, 357 |
| AspA2I | CCTAGG | 1 cut(s) | 581 |
| AspS9I | GGNCC | 4 cut(s) | 482, 483, 578, 609 |
| AvaII | GGWCC | 2 cut(s) | 578, 609 |
| AvrII | CCTAGG | 1 cut(s) | 581 |
| BaeGI | GKGCMC | 1 cut(s) | 486 |
| BanII | GRGCYC | 2 cut(s) | 486, 540 |
| BbsI | GAAGAC | 1 cut(s) | 566 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BbvI | GCAGC | 1 cut(s) | 200 |
| BccI | CCATC | 2 cut(s) | 589, 670 |
| BciT130I | CCWGG | 1 cut(s) | 575 |
| BcoDI | GTCTC | 2 cut(s) | 185, 205 |
| BfaI | CTAG | 1 cut(s) | 582 |
| BfuAI | ACCTGC | 1 cut(s) | 218 |
| BisI | GCNGC | 2 cut(s) | 214, 630 |
| BlnI | CCTAGG | 1 cut(s) | 581 |
| BlsI | GCNGC | 2 cut(s) | 215, 631 |
| Bme1390I | CCNGG | 1 cut(s) | 575 |
| Bme18I | GGWCC | 2 cut(s) | 578, 609 |
| BmgT120I | GGNCC | 4 cut(s) | 482, 483, 578, 609 |
| BmiI | GGNNCC | 3 cut(s) | 484, 579, 610 |
| BmrFI | CCNGG | 1 cut(s) | 575 |
| BmsI | GCATC | 1 cut(s) | 461 |
| BoxI | GACNNNNGTC | 1 cut(s) | 197 |
| BpiI | GAAGAC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 4 cut(s) | 486, 573, 574, 581 |
| BsaWI | WCCGGW | 1 cut(s) | 563 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 406, 436 |
| Bse118I | RCCGGY | 2 cut(s) | 448, 625 |
| BseBI | CCWGG | 1 cut(s) | 575 |
| BseDI | CCNNGG | 4 cut(s) | 486, 573, 574, 581 |
| BseGI | GGATG | 2 cut(s) | 244, 452 |
| BseMII | CTCAG | 2 cut(s) | 180, 400 |
| BseSI | GKGCMC | 1 cut(s) | 486 |
| BseXI | GCAGC | 1 cut(s) | 200 |
| BshFI | GGCC | 2 cut(s) | 484, 701 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BsiSI | CCGG | 5 cut(s) | 449, 564, 590, 626, 655 |
| BsmAI | GTCTC | 2 cut(s) | 185, 205 |
| BsnI | GGCC | 2 cut(s) | 484, 701 |
| Bsp120I | GGGCCC | 1 cut(s) | 482 |
| Bsp1286I | GDGCHC | 2 cut(s) | 486, 540 |
| Bsp143I | GATC | 1 cut(s) | 60 |
| BspACI | CCGC | 5 cut(s) | 446, 456, 605, 629, 680 |
| BspANI | GGCC | 2 cut(s) | 484, 701 |
| BspCNI | CTCAG | 2 cut(s) | 181, 399 |
| BspLI | GGNNCC | 3 cut(s) | 484, 579, 610 |
| BspMI | ACCTGC | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 2 cut(s) | 448, 625 |
| BssAI | RCCGGY | 2 cut(s) | 448, 625 |
| BssECI | CCNNGG | 4 cut(s) | 486, 573, 574, 581 |
| BssMI | GATC | 1 cut(s) | 60 |
| BssT1I | CCWWGG | 2 cut(s) | 486, 581 |
| Bst2UI | CCWGG | 1 cut(s) | 575 |
| Bst4CI | ACNGT | 1 cut(s) | 373 |
| Bst6I | CTCTTC | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 3 cut(s) | 450, 627, 671 |
| BstDEI | CTNAG | 3 cut(s) | 189, 232, 386 |
| BstEII | GGTNACC | 1 cut(s) | 422 |
| BstF5I | GGATG | 2 cut(s) | 244, 452 |
| BstKTI | GATC | 1 cut(s) | 63 |
| BstMAI | GTCTC | 2 cut(s) | 185, 205 |
| BstMBI | GATC | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 55 |
| BstNI | CCWGG | 1 cut(s) | 575 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 197 |
| BstPI | GGTNACC | 1 cut(s) | 422 |
| BstSCI | CCNGG | 1 cut(s) | 573 |
| BstSLI | GKGCMC | 1 cut(s) | 486 |
| BstV1I | GCAGC | 1 cut(s) | 200 |
| BstV2I | GAAGAC | 1 cut(s) | 566 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 466 |
| BsuRI | GGCC | 2 cut(s) | 484, 701 |
| BtgZI | GCGATG | 1 cut(s) | 608 |
| BtsCI | GGATG | 2 cut(s) | 244, 452 |
| BtsIMutI | CAGTG | 2 cut(s) | 378, 509 |
| BveI | ACCTGC | 1 cut(s) | 218 |
| Cac8I | GCNNGC | 3 cut(s) | 450, 627, 671 |
| Cfr10I | RCCGGY | 2 cut(s) | 448, 625 |
| Cfr13I | GGNCC | 4 cut(s) | 482, 483, 578, 609 |
| Csp6I | GTAC | 2 cut(s) | 177, 319 |
| CviAII | CATG | 2 cut(s) | 10, 220 |
| CviQI | GTAC | 2 cut(s) | 177, 319 |
| DdeI | CTNAG | 3 cut(s) | 189, 232, 386 |
| DpnI | GATC | 1 cut(s) | 62 |
| DpnII | GATC | 1 cut(s) | 60 |
| DraI | TTTAAA | 1 cut(s) | 253 |
| EaeI | YGGCCR | 1 cut(s) | 699 |
| Eam1104I | CTCTTC | 1 cut(s) | 429 |
| EarI | CTCTTC | 1 cut(s) | 429 |
| EciI | GGCGGA | 2 cut(s) | 435, 445 |
| Ecl136II | GAGCTC | 1 cut(s) | 538 |
| Eco130I | CCWWGG | 2 cut(s) | 486, 581 |
| Eco24I | GRGCYC | 2 cut(s) | 486, 540 |
| Eco47I | GGWCC | 2 cut(s) | 578, 609 |
| Eco53kI | GAGCTC | 1 cut(s) | 538 |
| Eco91I | GGTNACC | 1 cut(s) | 422 |
| EcoICRI | GAGCTC | 1 cut(s) | 538 |
| EcoO109I | RGGNCCY | 3 cut(s) | 483, 578, 609 |
| EcoO65I | GGTNACC | 1 cut(s) | 422 |
| EcoRI | GAATTC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 573 |
| EcoT14I | CCWWGG | 2 cut(s) | 486, 581 |
| EcoT38I | GRGCYC | 2 cut(s) | 486, 540 |
| ErhI | CCWWGG | 2 cut(s) | 486, 581 |
| FaeI | CATG | 2 cut(s) | 13, 223 |
| FaiI | YATR | 6 cut(s) | 11, 39, 82, 84, 221, 641 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 270, 302 |
| FatI | CATG | 2 cut(s) | 9, 219 |
| FauI | CCCGC | 2 cut(s) | 598, 673 |
| Fnu4HI | GCNGC | 2 cut(s) | 214, 630 |
| FokI | GGATG | 2 cut(s) | 231, 439 |
| FriOI | GRGCYC | 2 cut(s) | 486, 540 |
| Fsp4HI | GCNGC | 2 cut(s) | 214, 630 |
| FspBI | CTAG | 1 cut(s) | 582 |
| GluI | GCNGC | 2 cut(s) | 214, 630 |
| HaeIII | GGCC | 2 cut(s) | 484, 701 |
| HapII | CCGG | 5 cut(s) | 449, 564, 590, 626, 655 |
| Hin1II | CATG | 2 cut(s) | 13, 223 |
| HinfI | GANTC | 3 cut(s) | 514, 542, 586 |
| HpaII | CCGG | 5 cut(s) | 449, 564, 590, 626, 655 |
| Hpy188III | TCNNGA | 1 cut(s) | 270 |
| HpyAV | CCTTC | 2 cut(s) | 549, 622 |
| HpyCH4III | ACNGT | 1 cut(s) | 373 |
| HpyCH4IV | ACGT | 1 cut(s) | 601 |
| HpyCH4V | TGCA | 2 cut(s) | 58, 223 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 55 |
| HpyF3I | CTNAG | 3 cut(s) | 189, 232, 386 |
| HpySE526I | ACGT | 1 cut(s) | 601 |
| Hsp92II | CATG | 2 cut(s) | 13, 223 |
| KroI | GCCGGC | 2 cut(s) | 448, 625 |
| KroNI | GCCGGC | 2 cut(s) | 450, 627 |
| Kzo9I | GATC | 1 cut(s) | 60 |
| LmnI | GCTCC | 2 cut(s) | 286, 535 |
| Lsp1109I | GCAGC | 1 cut(s) | 200 |
| LweI | GCATC | 1 cut(s) | 461 |
| MaeI | CTAG | 1 cut(s) | 582 |
| MaeII | ACGT | 1 cut(s) | 601 |
| MaeIII | GTNAC | 2 cut(s) | 367, 422 |
| MalI | GATC | 1 cut(s) | 62 |
| MboI | GATC | 1 cut(s) | 60 |
| MboII | GAAGA | 3 cut(s) | 446, 485, 571 |
| MhlI | GDGCHC | 2 cut(s) | 486, 540 |
| MluCI | AATT | 8 cut(s) | 75, 102, 109, 114, 164, 297, 324, 377 |
| MlyI | GAGTC | 1 cut(s) | 508 |
| MroNI | GCCGGC | 2 cut(s) | 448, 625 |
| MseI | TTAA | 7 cut(s) | 113, 117, 252, 357, 395, 690, 709 |
| MslI | CAYNNNNRTG | 1 cut(s) | 674 |
| MspI | CCGG | 5 cut(s) | 449, 564, 590, 626, 655 |
| MspR9I | CCNGG | 1 cut(s) | 575 |
| MvaI | CCWGG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 55 |
| NaeI | GCCGGC | 2 cut(s) | 450, 627 |
| NdeII | GATC | 1 cut(s) | 60 |
| NgoMIV | GCCGGC | 2 cut(s) | 448, 625 |
| NlaIII | CATG | 2 cut(s) | 13, 223 |
| NlaIV | GGNNCC | 3 cut(s) | 484, 579, 610 |
| PacI | TTAATTAA | 1 cut(s) | 117 |
| PasI | CCCWGGG | 1 cut(s) | 574 |
| PdiI | GCCGGC | 2 cut(s) | 450, 627 |
| PfeI | GAWTC | 2 cut(s) | 542, 586 |
| PkrI | GCNGC | 2 cut(s) | 215, 631 |
| PleI | GAGTC | 1 cut(s) | 508 |
| PpsI | GAGTC | 1 cut(s) | 508 |
| PpuMI | RGGWCCY | 2 cut(s) | 578, 609 |
| PshAI | GACNNNNGTC | 1 cut(s) | 197 |
| PshBI | ATTAAT | 2 cut(s) | 117, 357 |
| Psp124BI | GAGCTC | 1 cut(s) | 540 |
| Psp5II | RGGWCCY | 2 cut(s) | 578, 609 |
| Psp6I | CCWGG | 1 cut(s) | 573 |
| PspEI | GGTNACC | 1 cut(s) | 422 |
| PspGI | CCWGG | 1 cut(s) | 573 |
| PspN4I | GGNNCC | 3 cut(s) | 484, 579, 610 |
| PspOMI | GGGCCC | 1 cut(s) | 482 |
| PspPI | GGNCC | 4 cut(s) | 482, 483, 578, 609 |
| PspPPI | RGGWCCY | 2 cut(s) | 578, 609 |
| RsaI | GTAC | 2 cut(s) | 178, 320 |
| RsaNI | GTAC | 2 cut(s) | 177, 319 |
| RseI | CAYNNNNRTG | 1 cut(s) | 674 |
| SacI | GAGCTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 7 cut(s) | 113, 117, 252, 357, 395, 690, 709 |
| SatI | GCNGC | 2 cut(s) | 214, 630 |
| Sau3AI | GATC | 1 cut(s) | 60 |
| Sau96I | GGNCC | 4 cut(s) | 482, 483, 578, 609 |
| SchI | GAGTC | 1 cut(s) | 508 |
| ScrFI | CCNGG | 1 cut(s) | 575 |
| SduI | GDGCHC | 2 cut(s) | 486, 540 |
| SetI | ASST | 8 cut(s) | 175, 212, 283, 466, 531, 540, 604, 621 |
| SfaNI | GCATC | 1 cut(s) | 461 |
| SinI | GGWCC | 2 cut(s) | 578, 609 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 674 |
| Sse9I | AATT | 8 cut(s) | 75, 102, 109, 114, 164, 297, 324, 377 |
| SsiI | CCGC | 5 cut(s) | 446, 456, 605, 629, 680 |
| SspMI | CTAG | 1 cut(s) | 582 |
| SstI | GAGCTC | 1 cut(s) | 540 |
| StyD4I | CCNGG | 1 cut(s) | 573 |
| StyI | CCWWGG | 2 cut(s) | 486, 581 |
| TaaI | ACNGT | 1 cut(s) | 373 |
| TaiI | ACGT | 1 cut(s) | 604 |
| TaqI | TCGA | 4 cut(s) | 263, 540, 545, 615 |
| TasI | AATT | 8 cut(s) | 75, 102, 109, 114, 164, 297, 324, 377 |
| TauI | GCSGC | 1 cut(s) | 632 |
| TfiI | GAWTC | 2 cut(s) | 542, 586 |
| Tru1I | TTAA | 7 cut(s) | 113, 117, 252, 357, 395, 690, 709 |
| Tru9I | TTAA | 7 cut(s) | 113, 117, 252, 357, 395, 690, 709 |
| TscAI | CASTG | 2 cut(s) | 378, 516 |
| TseI | GCWGC | 1 cut(s) | 213 |
| TspDTI | ATGAA | 3 cut(s) | 17, 77, 208 |
| TspGWI | ACGGA | 1 cut(s) | 355 |
| TspRI | CASTG | 2 cut(s) | 378, 516 |
| VpaK11BI | GGWCC | 2 cut(s) | 578, 609 |
| VspI | ATTAAT | 2 cut(s) | 117, 357 |
| XapI | RAATTY | 2 cut(s) | 109, 164 |
| XmaJI | CCTAGG | 1 cut(s) | 581 |
| XspI | CTAG | 1 cut(s) | 582 |