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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 119 |
| Acc65I | GGTACC | 1 cut(s) | 691 |
| AccB1I | GGYRCC | 2 cut(s) | 219, 691 |
| AccII | CGCG | 1 cut(s) | 217 |
| AciI | CCGC | 5 cut(s) | 5, 40, 215, 217, 571 |
| AcoI | YGGCCR | 1 cut(s) | 746 |
| AcsI | RAATTY | 1 cut(s) | 316 |
| AcuI | CTGAAG | 2 cut(s) | 446, 530 |
| AcyI | GRCGYC | 2 cut(s) | 220, 360 |
| AfaI | GTAC | 1 cut(s) | 693 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 49, 458 |
| AgsI | TTSAA | 2 cut(s) | 530, 620 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 304, 336 |
| AluBI | AGCT | 2 cut(s) | 21, 508 |
| AluI | AGCT | 2 cut(s) | 21, 508 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 424 |
| Ama87I | CYCGRG | 1 cut(s) | 32 |
| AoxI | GGCC | 3 cut(s) | 28, 520, 746 |
| ApeKI | GCWGC | 3 cut(s) | 124, 505, 625 |
| ApoI | RAATTY | 1 cut(s) | 316 |
| Asp718I | GGTACC | 1 cut(s) | 691 |
| AspLEI | GCGC | 3 cut(s) | 120, 129, 222 |
| AspS9I | GGNCC | 3 cut(s) | 449, 520, 632 |
| AsuHPI | GGTGA | 1 cut(s) | 219 |
| AsuII | TTCGAA | 1 cut(s) | 737 |
| AvaI | CYCGRG | 1 cut(s) | 32 |
| AvaII | GGWCC | 2 cut(s) | 449, 632 |
| BanI | GGYRCC | 2 cut(s) | 219, 691 |
| BbvCI | CCTCAGC | 1 cut(s) | 516 |
| BbvI | GCAGC | 3 cut(s) | 111, 517, 637 |
| BccI | CCATC | 4 cut(s) | 190, 587, 638, 698 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 326, 360 |
| BclI | TGATCA | 1 cut(s) | 87 |
| BfaI | CTAG | 2 cut(s) | 356, 654 |
| BfoI | RGCGCY | 1 cut(s) | 223 |
| BisI | GCNGC | 5 cut(s) | 40, 125, 218, 506, 626 |
| BlsI | GCNGC | 5 cut(s) | 41, 126, 219, 507, 627 |
| Bme18I | GGWCC | 2 cut(s) | 449, 632 |
| BmeT110I | CYCGRG | 1 cut(s) | 32 |
| BmgT120I | GGNCC | 3 cut(s) | 449, 520, 632 |
| BmiI | GGNNCC | 4 cut(s) | 38, 221, 450, 693 |
| BmrI | ACTGGG | 1 cut(s) | 709 |
| BmsI | GCATC | 1 cut(s) | 639 |
| BmuI | ACTGGG | 1 cut(s) | 709 |
| BoxI | GACNNNNGTC | 1 cut(s) | 363 |
| Bpu10I | CCTNAGC | 1 cut(s) | 516 |
| Bpu14I | TTCGAA | 1 cut(s) | 737 |
| BpuEI | CTTGAG | 1 cut(s) | 521 |
| BsaHI | GRCGYC | 2 cut(s) | 220, 360 |
| BsaJI | CCNNGG | 3 cut(s) | 31, 215, 239 |
| BsaWI | WCCGGW | 1 cut(s) | 451 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 49, 458 |
| Bse118I | RCCGGY | 1 cut(s) | 362 |
| Bse1I | ACTGG | 2 cut(s) | 50, 704 |
| Bse3DI | GCAATG | 1 cut(s) | 595 |
| BseDI | CCNNGG | 3 cut(s) | 31, 215, 239 |
| BseGI | GGATG | 3 cut(s) | 414, 654, 709 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 49, 458 |
| BseMI | GCAATG | 1 cut(s) | 595 |
| BseMII | CTCAG | 3 cut(s) | 507, 675, 705 |
| BseNI | ACTGG | 2 cut(s) | 50, 704 |
| BseXI | GCAGC | 3 cut(s) | 111, 517, 637 |
| BsgI | GTGCAG | 1 cut(s) | 356 |
| Bsh1236I | CGCG | 1 cut(s) | 217 |
| Bsh1285I | CGRYCG | 2 cut(s) | 9, 367 |
| BshFI | GGCC | 3 cut(s) | 30, 522, 748 |
| BshNI | GGYRCC | 2 cut(s) | 219, 691 |
| BsiEI | CGRYCG | 2 cut(s) | 9, 367 |
| BsiHKCI | CYCGRG | 1 cut(s) | 32 |
| BsiSI | CCGG | 2 cut(s) | 363, 452 |
| BslFI | GGGAC | 2 cut(s) | 425, 462 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 49, 458 |
| BsmFI | GGGAC | 2 cut(s) | 425, 462 |
| BsnI | GGCC | 3 cut(s) | 30, 522, 748 |
| BsoBI | CYCGRG | 1 cut(s) | 32 |
| Bsp119I | TTCGAA | 1 cut(s) | 737 |
| Bsp143I | GATC | 2 cut(s) | 87, 601 |
| BspACI | CCGC | 5 cut(s) | 5, 40, 215, 217, 571 |
| BspANI | GGCC | 3 cut(s) | 30, 522, 748 |
| BspCNI | CTCAG | 3 cut(s) | 508, 676, 706 |
| BspFNI | CGCG | 1 cut(s) | 217 |
| BspLI | GGNNCC | 4 cut(s) | 38, 221, 450, 693 |
| BspT104I | TTCGAA | 1 cut(s) | 737 |
| BspT107I | GGYRCC | 2 cut(s) | 219, 691 |
| BsrDI | GCAATG | 1 cut(s) | 595 |
| BsrFI | RCCGGY | 1 cut(s) | 362 |
| BsrI | ACTGG | 2 cut(s) | 50, 704 |
| BssAI | RCCGGY | 1 cut(s) | 362 |
| BssECI | CCNNGG | 3 cut(s) | 31, 215, 239 |
| BssMI | GATC | 2 cut(s) | 87, 601 |
| BssNI | GRCGYC | 2 cut(s) | 220, 360 |
| BssT1I | CCWWGG | 1 cut(s) | 239 |
| Bst6I | CTCTTC | 1 cut(s) | 63 |
| BstACI | GRCGYC | 2 cut(s) | 220, 360 |
| BstBI | TTCGAA | 1 cut(s) | 737 |
| BstC8I | GCNNGC | 2 cut(s) | 23, 122 |
| BstDEI | CTNAG | 4 cut(s) | 64, 516, 684, 714 |
| BstDSI | CCRYGG | 1 cut(s) | 215 |
| BstF5I | GGATG | 3 cut(s) | 414, 654, 709 |
| BstFNI | CGCG | 1 cut(s) | 217 |
| BstH2I | RGCGCY | 1 cut(s) | 223 |
| BstHHI | GCGC | 3 cut(s) | 120, 129, 222 |
| BstKTI | GATC | 2 cut(s) | 90, 604 |
| BstMBI | GATC | 2 cut(s) | 87, 601 |
| BstMCI | CGRYCG | 2 cut(s) | 9, 367 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 27, 36, 124, 126, 278 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 363 |
| BstUI | CGCG | 1 cut(s) | 217 |
| BstV1I | GCAGC | 3 cut(s) | 111, 517, 637 |
| BsuRI | GGCC | 3 cut(s) | 30, 522, 748 |
| BtgI | CCRYGG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 414, 654, 709 |
| BtsIMutI | CAGTG | 1 cut(s) | 43 |
| Cac8I | GCNNGC | 2 cut(s) | 23, 122 |
| CaiI | CAGNNNCTG | 1 cut(s) | 424 |
| CfoI | GCGC | 3 cut(s) | 120, 129, 222 |
| Cfr10I | RCCGGY | 1 cut(s) | 362 |
| Cfr13I | GGNCC | 3 cut(s) | 449, 520, 632 |
| Cfr42I | CCGCGG | 1 cut(s) | 218 |
| CseI | GACGC | 1 cut(s) | 368 |
| Csp6I | GTAC | 1 cut(s) | 692 |
| CviAII | CATG | 1 cut(s) | 629 |
| CviJI | RGCY | 7 cut(s) | 21, 30, 39, 508, 515, 522, 748 |
| CviKI_1 | RGCY | 7 cut(s) | 21, 30, 39, 508, 515, 522, 748 |
| CviQI | GTAC | 1 cut(s) | 692 |
| DdeI | CTNAG | 4 cut(s) | 64, 516, 684, 714 |
| DinI | GGCGCC | 1 cut(s) | 221 |
| DpnI | GATC | 2 cut(s) | 89, 603 |
| DpnII | GATC | 2 cut(s) | 87, 601 |
| EaeI | YGGCCR | 1 cut(s) | 746 |
| Eam1104I | CTCTTC | 1 cut(s) | 63 |
| EarI | CTCTTC | 1 cut(s) | 63 |
| Eco130I | CCWWGG | 1 cut(s) | 239 |
| Eco47I | GGWCC | 2 cut(s) | 449, 632 |
| Eco57I | CTGAAG | 2 cut(s) | 446, 530 |
| Eco88I | CYCGRG | 1 cut(s) | 32 |
| EcoO109I | RGGNCCY | 1 cut(s) | 520 |
| EcoT14I | CCWWGG | 1 cut(s) | 239 |
| EgeI | GGCGCC | 1 cut(s) | 221 |
| EheI | GGCGCC | 1 cut(s) | 221 |
| ErhI | CCWWGG | 1 cut(s) | 239 |
| FaeI | CATG | 1 cut(s) | 632 |
| FaqI | GGGAC | 2 cut(s) | 425, 462 |
| FatI | CATG | 1 cut(s) | 628 |
| FauNDI | CATATG | 1 cut(s) | 637 |
| FbaI | TGATCA | 1 cut(s) | 87 |
| Fnu4HI | GCNGC | 5 cut(s) | 40, 125, 218, 506, 626 |
| FokI | GGATG | 3 cut(s) | 401, 661, 716 |
| Fsp4HI | GCNGC | 5 cut(s) | 40, 125, 218, 506, 626 |
| FspBI | CTAG | 2 cut(s) | 356, 654 |
| FspI | TGCGCA | 1 cut(s) | 119 |
| GlaI | GCGC | 3 cut(s) | 119, 128, 221 |
| GluI | GCNGC | 5 cut(s) | 40, 125, 218, 506, 626 |
| HaeII | RGCGCY | 1 cut(s) | 223 |
| HaeIII | GGCC | 3 cut(s) | 30, 522, 748 |
| HapII | CCGG | 2 cut(s) | 363, 452 |
| HgaI | GACGC | 1 cut(s) | 368 |
| HhaI | GCGC | 3 cut(s) | 120, 129, 222 |
| Hin1I | GRCGYC | 2 cut(s) | 220, 360 |
| Hin1II | CATG | 1 cut(s) | 632 |
| Hin6I | GCGC | 3 cut(s) | 118, 127, 220 |
| HinP1I | GCGC | 3 cut(s) | 118, 127, 220 |
| HincII | GTYRAC | 1 cut(s) | 144 |
| HindII | GTYRAC | 1 cut(s) | 144 |
| HinfI | GANTC | 5 cut(s) | 53, 157, 172, 421, 766 |
| HpaI | GTTAAC | 1 cut(s) | 144 |
| HpaII | CCGG | 2 cut(s) | 363, 452 |
| HphI | GGTGA | 1 cut(s) | 219 |
| Hpy166II | GTNNAC | 1 cut(s) | 144 |
| Hpy188I | TCNGA | 3 cut(s) | 195, 426, 541 |
| Hpy188III | TCNNGA | 5 cut(s) | 34, 104, 169, 418, 500 |
| Hpy8I | GTNNAC | 1 cut(s) | 144 |
| HpyAV | CCTTC | 4 cut(s) | 143, 306, 505, 544 |
| HpyCH4IV | ACGT | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 1 cut(s) | 337 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 27, 36, 124, 126, 278 |
| HpyF3I | CTNAG | 4 cut(s) | 64, 516, 684, 714 |
| HpySE526I | ACGT | 1 cut(s) | 136 |
| Hsp92I | GRCGYC | 2 cut(s) | 220, 360 |
| Hsp92II | CATG | 1 cut(s) | 632 |
| HspAI | GCGC | 3 cut(s) | 118, 127, 220 |
| KasI | GGCGCC | 1 cut(s) | 219 |
| KpnI | GGTACC | 1 cut(s) | 695 |
| Ksp22I | TGATCA | 1 cut(s) | 87 |
| KspAI | GTTAAC | 1 cut(s) | 144 |
| KspI | CCGCGG | 1 cut(s) | 218 |
| Kzo9I | GATC | 2 cut(s) | 87, 601 |
| LmnI | GCTCC | 1 cut(s) | 36 |
| Lsp1109I | GCAGC | 3 cut(s) | 111, 517, 637 |
| LweI | GCATC | 1 cut(s) | 639 |
| MaeI | CTAG | 2 cut(s) | 356, 654 |
| MaeII | ACGT | 1 cut(s) | 136 |
| MaeIII | GTNAC | 1 cut(s) | 210 |
| MalI | GATC | 2 cut(s) | 89, 603 |
| MboI | GATC | 2 cut(s) | 87, 601 |
| MboII | GAAGA | 2 cut(s) | 50, 720 |
| MfeI | CAATTG | 1 cut(s) | 443 |
| MluCI | AATT | 4 cut(s) | 98, 206, 316, 443 |
| Mly113I | GGCGCC | 1 cut(s) | 220 |
| MseI | TTAA | 2 cut(s) | 143, 405 |
| MspA1I | CMGCKG | 2 cut(s) | 217, 508 |
| MspI | CCGG | 2 cut(s) | 363, 452 |
| MunI | CAATTG | 1 cut(s) | 443 |
| MvnI | CGCG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 27, 36, 124, 126, 278 |
| NarI | GGCGCC | 1 cut(s) | 220 |
| NdeI | CATATG | 1 cut(s) | 637 |
| NdeII | GATC | 2 cut(s) | 87, 601 |
| NlaIII | CATG | 1 cut(s) | 632 |
| NlaIV | GGNNCC | 4 cut(s) | 38, 221, 450, 693 |
| NmeAIII | GCCGAG | 1 cut(s) | 774 |
| NsbI | TGCGCA | 1 cut(s) | 119 |
| NspV | TTCGAA | 1 cut(s) | 737 |
| PfeI | GAWTC | 5 cut(s) | 53, 157, 172, 421, 766 |
| PkrI | GCNGC | 5 cut(s) | 41, 126, 219, 507, 627 |
| PluTI | GGCGCC | 1 cut(s) | 223 |
| PshAI | GACNNNNGTC | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 4 cut(s) | 38, 221, 450, 693 |
| PspPI | GGNCC | 3 cut(s) | 449, 520, 632 |
| PstNI | CAGNNNCTG | 1 cut(s) | 424 |
| PvuII | CAGCTG | 1 cut(s) | 508 |
| RsaI | GTAC | 1 cut(s) | 693 |
| RsaNI | GTAC | 1 cut(s) | 692 |
| SacII | CCGCGG | 1 cut(s) | 218 |
| SaqAI | TTAA | 2 cut(s) | 143, 405 |
| SatI | GCNGC | 5 cut(s) | 40, 125, 218, 506, 626 |
| Sau3AI | GATC | 2 cut(s) | 87, 601 |
| Sau96I | GGNCC | 3 cut(s) | 449, 520, 632 |
| SfaNI | GCATC | 1 cut(s) | 639 |
| SfoI | GGCGCC | 1 cut(s) | 221 |
| Sfr303I | CCGCGG | 1 cut(s) | 218 |
| SfuI | TTCGAA | 1 cut(s) | 737 |
| SgrBI | CCGCGG | 1 cut(s) | 218 |
| SinI | GGWCC | 2 cut(s) | 449, 632 |
| SmlI | CTYRAG | 1 cut(s) | 500 |
| SmoI | CTYRAG | 1 cut(s) | 500 |
| Sse9I | AATT | 4 cut(s) | 98, 206, 316, 443 |
| SsiI | CCGC | 5 cut(s) | 5, 40, 215, 217, 571 |
| SspDI | GGCGCC | 1 cut(s) | 219 |
| SspI | AATATT | 1 cut(s) | 670 |
| SspMI | CTAG | 2 cut(s) | 356, 654 |
| StyI | CCWWGG | 1 cut(s) | 239 |
| TaiI | ACGT | 1 cut(s) | 139 |
| TaqI | TCGA | 4 cut(s) | 277, 346, 680, 737 |
| TaqII | GACCGA | 1 cut(s) | 428 |
| TasI | AATT | 4 cut(s) | 98, 206, 316, 443 |
| TauI | GCSGC | 2 cut(s) | 42, 220 |
| TfiI | GAWTC | 5 cut(s) | 53, 157, 172, 421, 766 |
| Tru1I | TTAA | 2 cut(s) | 143, 405 |
| Tru9I | TTAA | 2 cut(s) | 143, 405 |
| TscAI | CASTG | 1 cut(s) | 50 |
| TseI | GCWGC | 3 cut(s) | 124, 505, 625 |
| TspDTI | ATGAA | 3 cut(s) | 563, 737, 758 |
| TspGWI | ACGGA | 1 cut(s) | 161 |
| TspRI | CASTG | 1 cut(s) | 50 |
| VpaK11BI | GGWCC | 2 cut(s) | 449, 632 |
| XapI | RAATTY | 1 cut(s) | 316 |
| XspI | CTAG | 2 cut(s) | 356, 654 |