Rorug06G0439700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000030
Physical Location & Seq
Forward (+)
57295928 .. 57299300
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0439700.1

Sequence Viewer

Length: 2142 bp
ATGGCTTCCACAACGAACCCTCTACTCTCTTCTAGCTTCTACGGCACTAAAATCCTCCACTCTCCTCCAACCCCCAAAACCACCAGATCATCAGCACCACTTCTTCCTCTTCCGTTCCTCTCCAAACGAAAGCTTGTAATTGCCAAAAATGAAGAACCCAATTCCGACTCCTTCAAATCCATTACATCCCAAGCCACTCTAGCGGGCTTGCTCTTTACTTCACTCACCACCCAACAAGCCCTCGCCGTAGACAACGTCACACCACCTTCACAGCCCGCGCCGCTGCTCCAGGCCCAGCCCACCAAGCCCAATTCCTCTCCCTTCTCTCAGAACCTCAACTTGACAGCACCAAAGCCACAACAGCAGGCCGTTACTGACCTCCCGGAAGGTAGCCAATGGCGCTACAGCGAGTTCTTGAACGCCGTGAAGAAGGGGAAGGTGGAGAGAGTCAGGTTCGCCAAAGAAGGGTCGGCTCTTCAGCTGACGGCGATTGACGGCCGTCGCGCCTCGGTGGTGGTCCCGAACGACCCGGACCTCATCGACATTCTGGCCATGAACGGCGTTGATATCTCCGTCTCCGAGGGAGATTCCGGAGGTGGGATATTCAACTTCATTGGGAATTTGCTGTTTCCGATAATCGCCTTCGCCGGGTTGTTCTTCCTTTTCAGGCGGGGACAGGGAGGTCCGGGAGGACCCGGCGGCCTCGGTGGGCCCATGGACTTCGGAAGGTCCAAGTCCAAGTTCCAGGAGGTTCCAGAAACTGGAGTTACTTTCTCTGATGTTGCTGGAGCTGACCAGGCCAAGCTGGAGTTGCAGGAGGTTGTTGATTTCTTGAAGAACCCGGATAAGTACACTGCTCTTGGAGCTAAAATCCCCAAGGGGTGTCTTCTGGTGGGGCCACCCGGTACCGGAAAGACCCTTCTGGCTCGTGCCGTCGCCGGTGAGGCTGGCACGCCGTTCTTCTCGTGCGCAGCTTCGGAGTTCGTGGAGCTGTTTGTTGGAGTTGGGGCCTCGAGAGTGAGGGATTTGTTTGAGAAGGCAAAGTCGAAAGCGCCGTGCATTGTGTTCATTGATGAGATTGATGCAGTTGGGAGGCAGAGAGGGGCAGGAATGGGAGGTGGAAATGACGAGAGAGAACAGACTATTAATCAGTTGTTGACGGAGATGGATGGTTTTTCTGGTAATTCTGGTGTGATTGTGTTGGCGGCGACTAACAGGCCGGATGTTCTTGATTCAGCTCTGTTGAGGCCCGGAAGGTTTGACAGACAAGTAACTGTGGACAGGCCTGATGTTGCTGGGAGAGTTAAGATCCTGCAGGTGCACTCCAGAGGGAAGGCACTGGCAAAGGATGTGGACTTTGAAAAGATTGCAAGGAGAACGCCTGGTTTCACAGGAGCAGATCTACAGAACCTGATGAACGAAGCTGCCATTCTTGCAGCCAGACGTGAGCTCAAGGAAATAAGCAAAGATGAGATAGCTGATGCTCTGGAGCGAATCATTGCCGGACCAGAGAAGAAAAATGCTGTAGTCTCGGAGGAGAAGAAGAAATTAGTTGCTTACCATGAGGCTGGGCATGCTCTTGTTGGTGCCTTGATGCCGGAATATGATCCTGTAGCCAAGATATCCATCATCCCCCGTGGCCAAGCAGGTGGTCTAACCTTCTTTGCTCCAAGTGAAGAGAGACTCGAGTCTGGACTGTACAGCAGAAGCTACCTGGAGAATCAAATGGCTGTTGCCCTTGGAGGAAGGGTGGCTGAAGAAGTTATCTTTGGTCAGGCAAATGTGACAACAGGAGCATCAAATGACTTCATGCAAGTTTCAAGGGTGGCAAGGCAGATGGTCGAGAGATTTGGATTCAGCAAAAAGATCGGACAAGTTGCGGTTGGTAGTTCAGGTGGCAATCCCTTCTTGGGTCAACAGATGTCATCCCAAAAAGATTACTCCATGGCGACCGCTGATATCGTGGATGCAGAGGTGAGGGAGCTGGTAGAGAAAGCTTACAAAAGGGCCACTGAGATGATCACAACCCACATTGACATCCTCCACAAGTTGGCCAACCTCCTGATAGAGAAGGAAAGTGTTGATGGTGAAGAATTCATGAGCCTCTTTATTGATGGAAAGGCTGAGCTTTATGTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

713

Amino Acids

76.43

Weight (kDa)

6.23

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 295 - 427 2.9e-45 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 450 - 492 4.1e-16 AAA+ lid domain
Peptidase_M41 PF01434 509 - 701 3.9e-72 Peptidase family M41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1306, 1637
AasI GACNNNNNNGTC 1 cut(s) 681
Acc16I TGCGCA 1 cut(s) 970
Acc36I ACCTGC 2 cut(s) 1306, 1637
Acc65I GGTACC 1 cut(s) 905
AccB1I GGYRCC 2 cut(s) 905, 1586
AccB7I CCANNNNNTGG 2 cut(s) 761, 2050
AccI GTMKAC 1 cut(s) 249
AccII CGCG 2 cut(s) 278, 504
AccIII TCCGGA 1 cut(s) 590
AciI CCGC 8 cut(s) 203, 276, 281, 670, 699, 1205, 1880, 1953
AclWI GGATC 2 cut(s) 1303, 1601
AcoI YGGCCR 4 cut(s) 496, 549, 1639, 2052
AcsI RAATTY 2 cut(s) 619, 2093
AcuI CTGAAG 2 cut(s) 461, 1776
AfaI GTAC 3 cut(s) 851, 907, 1700
AfiI CCNNNNNNNGG 7 cut(s) 465, 597, 648, 761, 908, 1910, 2050
AgsI TTSAA 6 cut(s) 175, 418, 607, 835, 1361, 1821
AjiI CACGTC 1 cut(s) 1445
AjnI CCWGG 5 cut(s) 288, 744, 795, 1381, 1713
AjuI GAANNNNNNNTTGG 4 cut(s) 725, 757, 1752, 1784
Alw21I GWGCWC 2 cut(s) 1323, 1452
Alw26I GTCTC 3 cut(s) 580, 1534, 1675
Alw44I GTGCAC 1 cut(s) 1319
AlwI GGATC 2 cut(s) 1303, 1601
AlwNI CAGNNNCTG 2 cut(s) 761, 1411
Ama87I CYCGRG 2 cut(s) 1012, 1685
Aor13HI TCCGGA 1 cut(s) 590
ApaI GGGCCC 1 cut(s) 714
ApaLI GTGCAC 1 cut(s) 1319
ApeKI GCWGC 4 cut(s) 283, 971, 1424, 1436
ApoI RAATTY 2 cut(s) 619, 2093
AseI ATTAAT 1 cut(s) 1146
Asp718I GGTACC 1 cut(s) 905
AspLEI GCGC 5 cut(s) 280, 402, 506, 971, 1054
AsuC2I CCSGG 8 cut(s) 383, 530, 649, 687, 696, 842, 903, 1251
AsuHPI GGTGA 4 cut(s) 217, 953, 1987, 2099
AvaI CYCGRG 2 cut(s) 1012, 1685
AvaII GGWCC 6 cut(s) 517, 532, 683, 692, 729, 1505
BaeGI GKGCMC 2 cut(s) 714, 1323
BalI TGGCCA 3 cut(s) 551, 1641, 2054
BanI GGYRCC 2 cut(s) 905, 1586
BanII GRGCYC 2 cut(s) 714, 1452
BauI CACGAG 2 cut(s) 927, 964
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 2 cut(s) 1323, 1452
BbvI GCAGC 4 cut(s) 270, 983, 1411, 1448
BccI CCATC 6 cut(s) 1159, 1163, 1634, 1831, 2078, 2108
BcgI CGANNNNNNTGC 2 cut(s) 1849, 1883
BciT130I CCWGG 5 cut(s) 290, 746, 797, 1383, 1715
BclI TGATCA 1 cut(s) 2019
BcnI CCSGG 8 cut(s) 383, 530, 649, 687, 696, 842, 903, 1251
BcoDI GTCTC 3 cut(s) 580, 1534, 1675
BfaI CTAG 2 cut(s) 33, 200
BfmI CTRYAG 5 cut(s) 403, 1313, 1403, 1524, 1611
BfoI RGCGCY 2 cut(s) 403, 1055
BfuAI ACCTGC 2 cut(s) 1306, 1637
BglI GCCNNNNNGGC 1 cut(s) 944
BglII AGATCT 1 cut(s) 1399
BisI GCNGC 7 cut(s) 281, 284, 700, 972, 1206, 1425, 1437
BlpI GCTNAGC 1 cut(s) 2124
BlsI GCNGC 7 cut(s) 282, 285, 701, 973, 1207, 1426, 1438
Bme18I GGWCC 6 cut(s) 517, 532, 683, 692, 729, 1505
BmeT110I CYCGRG 2 cut(s) 1012, 1685
BmgBI CACGTC 1 cut(s) 1445
BmiI GGNNCC 8 cut(s) 519, 694, 712, 753, 897, 907, 1009, 1588
BmsI GCATC 5 cut(s) 1072, 1471, 1584, 1805, 1957
BoxI GACNNNNGTC 2 cut(s) 498, 1687
BpiI GAAGAC 1 cut(s) 878
BpmI CTGGAG 7 cut(s) 272, 783, 807, 827, 1309, 1508, 1736
Bpu1102I GCTNAGC 1 cut(s) 2124
BpuEI CTTGAG 1 cut(s) 1436
BpuMI CCSGG 8 cut(s) 383, 530, 649, 687, 696, 842, 903, 1251
BsaBI GATNNNNATC 1 cut(s) 1625
BsaJI CCNNGG 8 cut(s) 507, 579, 703, 714, 876, 1636, 1738, 1944
BsaWI WCCGGW 2 cut(s) 590, 908
BsaXI ACNNNNNCTCC 2 cut(s) 1734, 1764
Bsc4I CCNNNNNNNGG 7 cut(s) 465, 597, 648, 761, 908, 1910, 2050
Bse118I RCCGGY 1 cut(s) 938
Bse1I ACTGG 2 cut(s) 766, 1344
Bse3DI GCAATG 1 cut(s) 1497
Bse8I GATNNNNATC 1 cut(s) 1625
BseAI TCCGGA 1 cut(s) 590
BseBI CCWGG 5 cut(s) 290, 746, 797, 1383, 1715
BseDI CCNNGG 8 cut(s) 507, 579, 703, 714, 876, 1636, 1738, 1944
BseGI GGATG 8 cut(s) 185, 1174, 1228, 1354, 1629, 1925, 1972, 2037
BseJI GATNNNNATC 1 cut(s) 1625
BseLI CCNNNNNNNGG 7 cut(s) 465, 597, 648, 761, 908, 1910, 2050
BseMI GCAATG 1 cut(s) 1497
BseMII CTCAG 3 cut(s) 341, 2004, 2115
BseNI ACTGG 2 cut(s) 766, 1344
BseRI GAGGAG 2 cut(s) 54, 1550
BseSI GKGCMC 2 cut(s) 714, 1323
BseX3I CGGCCG 1 cut(s) 496
BseXI GCAGC 4 cut(s) 270, 983, 1411, 1448
BseYI CCCAGC 3 cut(s) 294, 1295, 1568
Bsh1236I CGCG 2 cut(s) 278, 504
Bsh1285I CGRYCG 2 cut(s) 499, 1953
BshNI GGYRCC 2 cut(s) 905, 1586
BsiEI CGRYCG 2 cut(s) 499, 1953
BsiHKAI GWGCWC 2 cut(s) 1323, 1452
BsiHKCI CYCGRG 2 cut(s) 1012, 1685
BslFI GGGAC 2 cut(s) 503, 687
BslI CCNNNNNNNGG 7 cut(s) 465, 597, 648, 761, 908, 1910, 2050
BsmAI GTCTC 3 cut(s) 580, 1534, 1675
BsmBI CGTCTC 1 cut(s) 580
BsmFI GGGAC 2 cut(s) 503, 687
BsoBI CYCGRG 2 cut(s) 1012, 1685
Bsp120I GGGCCC 1 cut(s) 710
Bsp1286I GDGCHC 3 cut(s) 714, 1323, 1452
Bsp13I TCCGGA 1 cut(s) 590
Bsp1407I TGTACA 1 cut(s) 1698
Bsp143I GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
Bsp1720I GCTNAGC 1 cut(s) 2124
Bsp19I CCATGG 2 cut(s) 714, 1944
BspACI CCGC 8 cut(s) 203, 276, 281, 670, 699, 1205, 1880, 1953
BspCNI CTCAG 3 cut(s) 340, 2005, 2116
BspEI TCCGGA 1 cut(s) 590
BspFNI CGCG 2 cut(s) 278, 504
BspHI TCATGA 1 cut(s) 2097
BspLI GGNNCC 8 cut(s) 519, 694, 712, 753, 897, 907, 1009, 1588
BspMAI CTGCAG 1 cut(s) 1317
BspMI ACCTGC 2 cut(s) 1306, 1637
BspPI GGATC 2 cut(s) 1303, 1601
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 2 cut(s) 905, 1586
BsrDI GCAATG 1 cut(s) 1497
BsrFI RCCGGY 1 cut(s) 938
BsrGI TGTACA 1 cut(s) 1698
BsrI ACTGG 2 cut(s) 766, 1344
BssAI RCCGGY 1 cut(s) 938
BssECI CCNNGG 8 cut(s) 507, 579, 703, 714, 876, 1636, 1738, 1944
BssMI GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
BssSI CACGAG 2 cut(s) 927, 964
BssT1I CCWWGG 4 cut(s) 714, 876, 1738, 1944
Bst2BI CACGAG 2 cut(s) 927, 964
Bst2UI CCWGG 5 cut(s) 290, 746, 797, 1383, 1715
Bst4CI ACNGT 2 cut(s) 1276, 1698
Bst6I CTCTTC 4 cut(s) 34, 114, 480, 1671
BstAUI TGTACA 1 cut(s) 1698
BstC8I GCNNGC 7 cut(s) 205, 209, 276, 366, 949, 953, 1575
BstDEI CTNAG 3 cut(s) 327, 2013, 2124
BstDSI CCRYGG 3 cut(s) 714, 1636, 1944
BstF5I GGATG 8 cut(s) 185, 1174, 1228, 1354, 1629, 1925, 1972, 2037
BstFNI CGCG 2 cut(s) 278, 504
BstH2I RGCGCY 2 cut(s) 403, 1055
BstHHI GCGC 5 cut(s) 280, 402, 506, 971, 1054
BstKTI GATC 6 cut(s) 89, 1311, 1402, 1609, 1869, 2022
BstMAI GTCTC 3 cut(s) 580, 1534, 1675
BstMBI GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
BstMCI CGRYCG 2 cut(s) 499, 1953
BstNI CCWGG 5 cut(s) 290, 746, 797, 1383, 1715
BstNSI RCATGY 1 cut(s) 1577
BstPAI GACNNNNGTC 2 cut(s) 498, 1687
BstSFI CTRYAG 5 cut(s) 403, 1313, 1403, 1524, 1611
BstSLI GKGCMC 2 cut(s) 714, 1323
BstUI CGCG 2 cut(s) 278, 504
BstV1I GCAGC 4 cut(s) 270, 983, 1411, 1448
BstV2I GAAGAC 1 cut(s) 878
BstX2I RGATCY 2 cut(s) 1308, 1399
BstXI CCANNNNNNTGG 2 cut(s) 1568, 1649
BstYI RGATCY 2 cut(s) 1308, 1399
BstZI CGGCCG 1 cut(s) 496
BtgI CCRYGG 3 cut(s) 714, 1636, 1944
BtrI CACGTC 1 cut(s) 1445
BtsCI GGATG 8 cut(s) 185, 1174, 1228, 1354, 1629, 1925, 1972, 2037
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 3 cut(s) 852, 1337, 2010
BveI ACCTGC 2 cut(s) 1306, 1637
Cac8I GCNNGC 7 cut(s) 205, 209, 276, 366, 949, 953, 1575
CaiI CAGNNNCTG 2 cut(s) 761, 1411
CciI TCATGA 1 cut(s) 2097
CfoI GCGC 5 cut(s) 280, 402, 506, 971, 1054
Cfr10I RCCGGY 1 cut(s) 938
Csp6I GTAC 3 cut(s) 850, 906, 1699
CspCI CAANNNNNGTGG 2 cut(s) 1332, 1367
CviAII CATG 7 cut(s) 553, 715, 1562, 1574, 1810, 1945, 2098
CviQI GTAC 3 cut(s) 850, 906, 1699
DdeI CTNAG 3 cut(s) 327, 2013, 2124
DpnI GATC 6 cut(s) 88, 1310, 1401, 1608, 1868, 2021
DpnII GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
DrdI GACNNNNNNGTC 1 cut(s) 681
DseDI GACNNNNNNGTC 1 cut(s) 681
EaeI YGGCCR 4 cut(s) 496, 549, 1639, 2052
EagI CGGCCG 1 cut(s) 496
Eam1104I CTCTTC 4 cut(s) 34, 114, 480, 1671
EarI CTCTTC 4 cut(s) 34, 114, 480, 1671
Ecl136II GAGCTC 1 cut(s) 1450
EclXI CGGCCG 1 cut(s) 496
Eco130I CCWWGG 4 cut(s) 714, 876, 1738, 1944
Eco147I AGGCCT 1 cut(s) 1285
Eco24I GRGCYC 2 cut(s) 714, 1452
Eco32I GATATC 3 cut(s) 568, 1623, 1960
Eco47I GGWCC 6 cut(s) 517, 532, 683, 692, 729, 1505
Eco52I CGGCCG 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 1450
Eco57I CTGAAG 2 cut(s) 461, 1776
Eco88I CYCGRG 2 cut(s) 1012, 1685
EcoICRI GAGCTC 1 cut(s) 1450
EcoO109I RGGNCCY 2 cut(s) 692, 1008
EcoRI GAATTC 1 cut(s) 2093
EcoRII CCWGG 5 cut(s) 288, 744, 795, 1381, 1713
EcoRV GATATC 3 cut(s) 568, 1623, 1960
EcoT14I CCWWGG 4 cut(s) 714, 876, 1738, 1944
EcoT38I GRGCYC 2 cut(s) 714, 1452
ErhI CCWWGG 4 cut(s) 714, 876, 1738, 1944
Esp3I CGTCTC 1 cut(s) 580
FaeI CATG 7 cut(s) 556, 718, 1565, 1577, 1813, 1948, 2101
FaqI GGGAC 2 cut(s) 503, 687
FatI CATG 7 cut(s) 552, 714, 1561, 1573, 1809, 1944, 2097
FauI CCCGC 3 cut(s) 196, 283, 663
FbaI TGATCA 1 cut(s) 2019
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 7 cut(s) 281, 284, 700, 972, 1206, 1425, 1437
FokI GGATG 8 cut(s) 172, 1181, 1235, 1361, 1616, 1912, 1979, 2024
FriOI GRGCYC 2 cut(s) 714, 1452
Fsp4HI GCNGC 7 cut(s) 281, 284, 700, 972, 1206, 1425, 1437
FspBI CTAG 2 cut(s) 33, 200
FspI TGCGCA 1 cut(s) 970
GlaI GCGC 5 cut(s) 279, 401, 505, 970, 1053
GluI GCNGC 7 cut(s) 281, 284, 700, 972, 1206, 1425, 1437
GsaI CCCAGC 3 cut(s) 298, 1299, 1572
GsuI CTGGAG 7 cut(s) 272, 783, 807, 827, 1309, 1508, 1736
HaeII RGCGCY 2 cut(s) 403, 1055
HhaI GCGC 5 cut(s) 280, 402, 506, 971, 1054
Hin1II CATG 7 cut(s) 556, 718, 1565, 1577, 1813, 1948, 2101
Hin6I GCGC 5 cut(s) 278, 400, 504, 969, 1052
HinP1I GCGC 5 cut(s) 278, 400, 504, 969, 1052
HincII GTYRAC 2 cut(s) 1158, 1916
HindII GTYRAC 2 cut(s) 1158, 1916
HindIII AAGCTT 2 cut(s) 131, 1995
HinfI GANTC 9 cut(s) 167, 447, 587, 1232, 1494, 1683, 1688, 1720, 1854
HphI GGTGA 4 cut(s) 217, 953, 1987, 2099
Hpy166II GTNNAC 7 cut(s) 250, 852, 1158, 1279, 1321, 1354, 1916
Hpy188I TCNGA 9 cut(s) 166, 330, 580, 633, 725, 778, 979, 1534, 1871
Hpy8I GTNNAC 7 cut(s) 250, 852, 1158, 1279, 1321, 1354, 1916
Hpy99I CGWCG 2 cut(s) 504, 938
HpyCH4III ACNGT 2 cut(s) 1276, 1698
HpyCH4IV ACGT 2 cut(s) 255, 1444
HpyCH4V TGCA 9 cut(s) 814, 1059, 1085, 1315, 1321, 1370, 1436, 1813, 1970
HpyF3I CTNAG 3 cut(s) 327, 2013, 2124
HpySE526I ACGT 2 cut(s) 255, 1444
Hsp92II CATG 7 cut(s) 556, 718, 1565, 1577, 1813, 1948, 2101
HspAI GCGC 5 cut(s) 278, 400, 504, 969, 1052
Kpn2I TCCGGA 1 cut(s) 590
KpnI GGTACC 1 cut(s) 909
Ksp22I TGATCA 1 cut(s) 2019
Kzo9I GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 9 cut(s) 291, 788, 863, 988, 1394, 1489, 1672, 1793, 1981
Lsp1109I GCAGC 4 cut(s) 270, 983, 1411, 1448
LweI GCATC 5 cut(s) 1072, 1471, 1584, 1805, 1957
MaeI CTAG 2 cut(s) 33, 200
MaeII ACGT 2 cut(s) 255, 1444
MaeIII GTNAC 5 cut(s) 256, 370, 766, 1270, 1783
MalI GATC 6 cut(s) 88, 1310, 1401, 1608, 1868, 2021
MboI GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
MflI RGATCY 2 cut(s) 1308, 1399
MhlI GDGCHC 3 cut(s) 714, 1323, 1452
MlsI TGGCCA 3 cut(s) 551, 1641, 2054
MluCI AATT 7 cut(s) 138, 160, 310, 619, 1183, 1547, 2093
MluNI TGGCCA 3 cut(s) 551, 1641, 2054
MlyI GAGTC 4 cut(s) 161, 456, 1677, 1697
MmeI TCCRAC 3 cut(s) 92, 189, 979
Mox20I TGGCCA 3 cut(s) 551, 1641, 2054
MroI TCCGGA 1 cut(s) 590
MscI TGGCCA 3 cut(s) 551, 1641, 2054
MseI TTAA 2 cut(s) 1146, 1305
MslI CAYNNNNRTG 1 cut(s) 2015
Msp20I TGGCCA 3 cut(s) 551, 1641, 2054
MspA1I CMGCKG 3 cut(s) 283, 481, 1955
MvaI CCWGG 5 cut(s) 290, 746, 797, 1383, 1715
MvnI CGCG 2 cut(s) 278, 504
NciI CCSGG 8 cut(s) 383, 530, 649, 687, 696, 842, 903, 1251
NcoI CCATGG 2 cut(s) 714, 1944
NdeII GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
NlaIII CATG 7 cut(s) 556, 718, 1565, 1577, 1813, 1948, 2101
NlaIV GGNNCC 8 cut(s) 519, 694, 712, 753, 897, 907, 1009, 1588
NmuCI GTSAC 2 cut(s) 256, 1783
NsbI TGCGCA 1 cut(s) 970
NspI RCATGY 1 cut(s) 1577
PaeI GCATGC 1 cut(s) 1577
PaeR7I CTCGAG 2 cut(s) 1012, 1685
PagI TCATGA 1 cut(s) 2097
PaqCI CACCTGC 2 cut(s) 1306, 1637
PceI AGGCCT 1 cut(s) 1285
PciSI GCTCTTC 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 1052
PfeI GAWTC 5 cut(s) 587, 1232, 1494, 1720, 1854
PflFI GACNNNGTC 1 cut(s) 254
PflMI CCANNNNNTGG 2 cut(s) 761, 2050
PfoI TCCNGGA 3 cut(s) 381, 685, 744
PkrI GCNGC 7 cut(s) 282, 285, 701, 973, 1207, 1426, 1438
PleI GAGTC 4 cut(s) 161, 455, 1677, 1696
PpsI GAGTC 4 cut(s) 161, 455, 1677, 1696
PpuMI RGGWCCY 1 cut(s) 692
PshAI GACNNNNGTC 2 cut(s) 498, 1687
PshBI ATTAAT 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 1452
Psp5II RGGWCCY 1 cut(s) 692
Psp6I CCWGG 5 cut(s) 288, 744, 795, 1381, 1713
PspFI CCCAGC 3 cut(s) 294, 1295, 1568
PspGI CCWGG 5 cut(s) 288, 744, 795, 1381, 1713
PspN4I GGNNCC 8 cut(s) 519, 694, 712, 753, 897, 907, 1009, 1588
PspOMI GGGCCC 1 cut(s) 710
PspPPI RGGWCCY 1 cut(s) 692
PspXI VCTCGAGB 1 cut(s) 1685
PstI CTGCAG 1 cut(s) 1317
PstNI CAGNNNCTG 2 cut(s) 761, 1411
PsuI RGATCY 2 cut(s) 1308, 1399
PsyI GACNNNGTC 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 3 cut(s) 851, 907, 1700
RsaNI GTAC 3 cut(s) 850, 906, 1699
RseI CAYNNNNRTG 1 cut(s) 2015
SacI GAGCTC 1 cut(s) 1452
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 1146, 1305
SatI GCNGC 7 cut(s) 281, 284, 700, 972, 1206, 1425, 1437
Sau3AI GATC 6 cut(s) 86, 1308, 1399, 1606, 1866, 2019
SbfI CCTGCAGG 1 cut(s) 1317
SchI GAGTC 4 cut(s) 161, 456, 1677, 1697
SdaI CCTGCAGG 1 cut(s) 1317
SduI GDGCHC 3 cut(s) 714, 1323, 1452
SfaNI GCATC 5 cut(s) 1072, 1471, 1584, 1805, 1957
SfcI CTRYAG 5 cut(s) 403, 1313, 1403, 1524, 1611
Sfr274I CTCGAG 2 cut(s) 1012, 1685
SgrAI CRCCGGYG 1 cut(s) 938
SinI GGWCC 6 cut(s) 517, 532, 683, 692, 729, 1505
SlaI CTCGAG 2 cut(s) 1012, 1685
SmiMI CAYNNNNRTG 1 cut(s) 2015
SmlI CTYRAG 3 cut(s) 1012, 1451, 1685
SmoI CTYRAG 3 cut(s) 1012, 1451, 1685
SphI GCATGC 1 cut(s) 1577
Sse8387I CCTGCAGG 1 cut(s) 1317
Sse9I AATT 7 cut(s) 138, 160, 310, 619, 1183, 1547, 2093
SseBI AGGCCT 1 cut(s) 1285
SsiI CCGC 8 cut(s) 203, 276, 281, 670, 699, 1205, 1880, 1953
SspMI CTAG 2 cut(s) 33, 200
SstI GAGCTC 1 cut(s) 1452
StuI AGGCCT 1 cut(s) 1285
StyI CCWWGG 4 cut(s) 714, 876, 1738, 1944
TaaI ACNGT 2 cut(s) 1276, 1698
TaiI ACGT 2 cut(s) 258, 1447
TaqI TCGA 5 cut(s) 540, 1013, 1046, 1686, 1842
TasI AATT 7 cut(s) 138, 160, 310, 619, 1183, 1547, 2093
TatI WGTACW 2 cut(s) 849, 1698
TauI GCSGC 3 cut(s) 283, 702, 1208
TfiI GAWTC 5 cut(s) 587, 1232, 1494, 1720, 1854
Tru1I TTAA 2 cut(s) 1146, 1305
Tru9I TTAA 2 cut(s) 1146, 1305
TscAI CASTG 3 cut(s) 859, 1344, 2017
TseFI GTSAC 2 cut(s) 256, 1783
TseI GCWGC 4 cut(s) 283, 971, 1424, 1436
Tsp45I GTSAC 2 cut(s) 256, 1783
TspDTI ATGAA 7 cut(s) 165, 569, 601, 1057, 1430, 1798, 2086
TspGWI ACGGA 3 cut(s) 102, 562, 1175
TspRI CASTG 3 cut(s) 859, 1344, 2017
Tth111I GACNNNGTC 1 cut(s) 254
Van91I CCANNNNNTGG 2 cut(s) 761, 2050
VneI GTGCAC 1 cut(s) 1319
VpaK11BI GGWCC 6 cut(s) 517, 532, 683, 692, 729, 1505
VspI ATTAAT 1 cut(s) 1146
XapI RAATTY 2 cut(s) 619, 2093
XceI RCATGY 1 cut(s) 1577
XhoI CTCGAG 2 cut(s) 1012, 1685
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 33, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.