Rh4BG254300

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000030
Physical Location & Seq
Forward (+)
42542445 .. 42546139
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG254300.1

Sequence Viewer

Length: 858 bp
ATGGAAGACGGAGAGAAGAGAGGTGCGGATGATTGTGGAAGGAGGAAAGCAGTGCATTTTATGATTGACAAGGTAACCAAAACTAGTGGCCAGAAGCGGAAAAACAGATTGTATGAGGAAGAAAATAAGGTCATTGATACCGCTGTTGAAGTGGCAAGGGACAAGGCGGTTGATGACTGCAAGACAGTCCCTGCTTTTAACGAAGCATTAGAGAATGAGGTCACCATCCGAACAGCATTGCGTGGAAAACACTTCAGAAGGACTATGTCTTCCCTGTCTGAGGAGAAGATACTTGCGACATATGAAATGGGGTTTGGGACACTGCACCAAATCCGCTGCACGAAATTGAACCTCCCATTGTGCCAAATGCTGGTTGAAAATTTTGACGTTGCCAACTCATGCATCAAGATACACGGGAGGAACTTGACAGTGAGTGAGGAAGACTTTAGGCGCATTATGGGAGTCAGAGGTGGAGGGTGTGATGTGGACTTTGAAGGAAGCACCGTTGAGCATGAAATTTTGGCGCTGAAGAGGGAGATAGCAGGGAAGGAGAGCGAGATAACCATAGGTGGACTGAGTAGGTTGCTCATTGAATCTGAATTGGTTGATGACACATATAAGGTCGGCTTTGCCTTGTATGCCCTAGCAACTCTGTTATGCCCAGTAACGGGAGCCCACGTGGATGAACGATACTTTATACCATTGAAGGATCCAGATGACGGTGATGCACGGTCCACTCTTCGGAGGAGGTGGAAACAGCGAAGTATTGAAGAGATCGAGTCAACTGGTACCCGGAGATTTGGTGACCAAGTCCAGCATCCAGGAGTTCGTATTGAGCACCCGGGGTCTGTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

285

Amino Acids

32.11

Weight (kDa)

6.12

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 788
AccB1I GGYRCC 1 cut(s) 788
AccB7I CCANNNNNTGG 1 cut(s) 370
AciI CCGC 5 cut(s) 26, 97, 141, 167, 334
AclWI GGATC 2 cut(s) 704, 717
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 379, 516
AcuI CTGAAG 2 cut(s) 238, 548
AcvI CACGTG 1 cut(s) 679
AfaI GTAC 1 cut(s) 790
AfiI CCNNNNNNNGG 6 cut(s) 280, 370, 667, 668, 719, 741
AgsI TTSAA 7 cut(s) 149, 349, 377, 494, 593, 706, 770
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 820
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
Alw21I GWGCWC 1 cut(s) 840
AlwI GGATC 2 cut(s) 704, 717
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 336
ApoI RAATTY 2 cut(s) 379, 516
Asp718I GGTACC 1 cut(s) 788
AspLEI GCGC 2 cut(s) 453, 526
AspS9I GGNCC 1 cut(s) 732
AsuC2I CCSGG 3 cut(s) 793, 842, 843
AsuHPI GGTGA 3 cut(s) 214, 734, 815
AvaI CYCGRG 1 cut(s) 841
AvaII GGWCC 1 cut(s) 732
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BalI TGGCCA 1 cut(s) 90
BamHI GGATCC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 788
BanII GRGCYC 1 cut(s) 676
BbrPI CACGTG 1 cut(s) 679
BbsI GAAGAC 3 cut(s) 12, 261, 447
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 822
BcnI CCSGG 3 cut(s) 793, 842, 843
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 644
BfoI RGCGCY 1 cut(s) 527
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 4 cut(s) 793, 822, 842, 843
Bme18I GGWCC 1 cut(s) 732
BmeT110I CYCGRG 1 cut(s) 841
BmgT120I GGNCC 1 cut(s) 732
BmiI GGNNCC 3 cut(s) 673, 711, 790
BmrFI CCNGG 4 cut(s) 793, 822, 842, 843
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 3 cut(s) 411, 715, 826
BmuI ACTGGG 1 cut(s) 656
BpiI GAAGAC 3 cut(s) 12, 261, 447
BpuMI CCSGG 3 cut(s) 793, 842, 843
BsaAI YACGTR 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 841, 842
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 787, 817
Bsc4I CCNNNNNNNGG 6 cut(s) 280, 370, 667, 668, 719, 741
Bse1I ACTGG 2 cut(s) 662, 790
Bse3DI GCAATG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 822
BseDI CCNNGG 2 cut(s) 841, 842
BseGI GGATG 4 cut(s) 34, 225, 688, 817
BseLI CCNNNNNNNGG 6 cut(s) 280, 370, 667, 668, 719, 741
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 270, 566
BseNI ACTGG 2 cut(s) 662, 790
BseRI GAGGAG 2 cut(s) 296, 760
BseXI GCAGC 1 cut(s) 323
BsgI GTGCAG 2 cut(s) 308, 322
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 788
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 2 cut(s) 793, 842
BslFI GGGAC 4 cut(s) 173, 173, 331, 836
BslI CCNNNNNNNGG 6 cut(s) 280, 370, 667, 668, 719, 741
BsmFI GGGAC 4 cut(s) 173, 173, 331, 836
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 676, 840
Bsp143I GATC 2 cut(s) 709, 774
BspACI CCGC 5 cut(s) 26, 97, 141, 167, 334
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 271, 567
BspLI GGNNCC 3 cut(s) 673, 711, 790
BspPI GGATC 2 cut(s) 704, 717
BspT107I GGYRCC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 236
BsrI ACTGG 2 cut(s) 662, 790
BssECI CCNNGG 2 cut(s) 841, 842
BssMI GATC 2 cut(s) 709, 774
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 5 cut(s) 187, 430, 505, 722, 732
Bst6I CTCTTC 4 cut(s) 11, 524, 744, 765
BstBAI YACGTR 1 cut(s) 679
BstDEI CTNAG 2 cut(s) 279, 575
BstEII GGTNACC 3 cut(s) 73, 220, 803
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 4 cut(s) 34, 225, 688, 817
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 453, 526
BstKTI GATC 2 cut(s) 712, 777
BstMBI GATC 2 cut(s) 709, 774
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNI CCWGG 1 cut(s) 822
BstPI GGTNACC 3 cut(s) 73, 220, 803
BstSCI CCNGG 4 cut(s) 791, 820, 840, 841
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 3 cut(s) 12, 261, 447
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 4 cut(s) 34, 225, 688, 817
BtsI GCAGTG 2 cut(s) 57, 320
BtsIMutI CAGTG 3 cut(s) 57, 320, 435
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 2 cut(s) 453, 526
Cfr13I GGNCC 1 cut(s) 732
Cfr9I CCCGGG 1 cut(s) 841
Csp6I GTAC 1 cut(s) 789
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 2 cut(s) 399, 512
CviJI RGCY 3 cut(s) 90, 627, 674
CviKI_1 RGCY 3 cut(s) 90, 627, 674
CviQI GTAC 1 cut(s) 789
DdeI CTNAG 2 cut(s) 279, 575
DpnI GATC 2 cut(s) 711, 776
DpnII GATC 2 cut(s) 709, 774
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 4 cut(s) 11, 524, 744, 765
EarI CTCTTC 4 cut(s) 11, 524, 744, 765
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 732
Eco57I CTGAAG 2 cut(s) 238, 548
Eco72I CACGTG 1 cut(s) 679
Eco88I CYCGRG 1 cut(s) 841
Eco91I GGTNACC 3 cut(s) 73, 220, 803
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO65I GGTNACC 3 cut(s) 73, 220, 803
EcoRII CCWGG 1 cut(s) 820
EcoT22I ATGCAT 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 676
FaeI CATG 2 cut(s) 402, 515
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 4 cut(s) 173, 173, 331, 836
FatI CATG 2 cut(s) 398, 511
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 4 cut(s) 41, 212, 695, 804
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 1 cut(s) 337
FspBI CTAG 2 cut(s) 84, 644
GlaI GCGC 2 cut(s) 452, 525
GluI GCNGC 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 793, 842
HhaI GCGC 2 cut(s) 453, 526
Hin1II CATG 2 cut(s) 402, 515
Hin6I GCGC 2 cut(s) 451, 524
HinP1I GCGC 2 cut(s) 451, 524
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HinfI GANTC 3 cut(s) 462, 593, 779
HpaII CCGG 2 cut(s) 793, 842
HphI GGTGA 3 cut(s) 214, 734, 815
Hpy166II GTNNAC 4 cut(s) 487, 572, 735, 783
Hpy188I TCNGA 6 cut(s) 230, 257, 280, 467, 598, 744
Hpy188III TCNNGA 2 cut(s) 406, 713
Hpy8I GTNNAC 4 cut(s) 487, 572, 735, 783
HpyAV CCTTC 5 cut(s) 33, 252, 488, 541, 700
HpyCH4III ACNGT 5 cut(s) 187, 430, 505, 722, 732
HpyCH4IV ACGT 2 cut(s) 387, 678
HpyCH4V TGCA 6 cut(s) 55, 180, 325, 339, 402, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 2 cut(s) 279, 575
HpySE526I ACGT 2 cut(s) 387, 678
Hsp92II CATG 2 cut(s) 402, 515
HspAI GCGC 2 cut(s) 451, 524
KpnI GGTACC 1 cut(s) 792
Kzo9I GATC 2 cut(s) 709, 774
LmnI GCTCC 1 cut(s) 671
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 3 cut(s) 411, 715, 826
MaeI CTAG 2 cut(s) 84, 644
MaeII ACGT 2 cut(s) 387, 678
MaeIII GTNAC 4 cut(s) 73, 220, 664, 803
MalI GATC 2 cut(s) 711, 776
MboI GATC 2 cut(s) 709, 774
MboII GAAGA 9 cut(s) 17, 28, 131, 261, 298, 452, 541, 731, 782
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 676, 840
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 4 cut(s) 344, 379, 516, 599
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 2 cut(s) 471, 788
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 404
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 2 cut(s) 143, 336
MspI CCGG 2 cut(s) 793, 842
MspR9I CCNGG 4 cut(s) 793, 822, 842, 843
MvaI CCWGG 1 cut(s) 822
MwoI GCNNNNNNNGC 1 cut(s) 638
NciI CCSGG 3 cut(s) 793, 842, 843
NdeI CATATG 1 cut(s) 301
NdeII GATC 2 cut(s) 709, 774
NlaIII CATG 2 cut(s) 402, 515
NlaIV GGNNCC 3 cut(s) 673, 711, 790
NmuCI GTSAC 2 cut(s) 220, 803
NsiI ATGCAT 1 cut(s) 404
PfeI GAWTC 1 cut(s) 593
PflFI GACNNNGTC 2 cut(s) 265, 809
PflMI CCANNNNNTGG 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 820
PkrI GCNGC 1 cut(s) 338
PleI GAGTC 2 cut(s) 470, 787
PmaCI CACGTG 1 cut(s) 679
PmlI CACGTG 1 cut(s) 679
PpsI GAGTC 2 cut(s) 470, 787
Ppu21I YACGTR 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 820
PspCI CACGTG 1 cut(s) 679
PspEI GGTNACC 3 cut(s) 73, 220, 803
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 3 cut(s) 673, 711, 790
PspPI GGNCC 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 709
PsyI GACNNNGTC 2 cut(s) 265, 809
RsaI GTAC 1 cut(s) 790
RsaNI GTAC 1 cut(s) 789
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 2 cut(s) 709, 774
Sau96I GGNCC 1 cut(s) 732
SchI GAGTC 2 cut(s) 471, 788
ScrFI CCNGG 4 cut(s) 793, 822, 842, 843
SduI GDGCHC 2 cut(s) 676, 840
SfaNI GCATC 3 cut(s) 411, 715, 826
SinI GGWCC 1 cut(s) 732
SmaI CCCGGG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 681
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 4 cut(s) 344, 379, 516, 599
SsiI CCGC 5 cut(s) 26, 97, 141, 167, 334
SspMI CTAG 2 cut(s) 84, 644
StyD4I CCNGG 4 cut(s) 791, 820, 840, 841
TaaI ACNGT 5 cut(s) 187, 430, 505, 722, 732
TaiI ACGT 2 cut(s) 390, 681
TaqI TCGA 1 cut(s) 777
TasI AATT 4 cut(s) 344, 379, 516, 599
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 3 cut(s) 57, 327, 435
TseFI GTSAC 2 cut(s) 220, 803
TseI GCWGC 1 cut(s) 336
Tsp45I GTSAC 2 cut(s) 220, 803
TspDTI ATGAA 3 cut(s) 318, 528, 699
TspGWI ACGGA 1 cut(s) 24
TspMI CCCGGG 1 cut(s) 841
TspRI CASTG 3 cut(s) 57, 327, 435
Tth111I GACNNNGTC 2 cut(s) 265, 809
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 732
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 2 cut(s) 379, 516
XmaI CCCGGG 1 cut(s) 841
XspI CTAG 2 cut(s) 84, 644
Zsp2I ATGCAT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.