Rh5AG364300

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000030
Physical Location & Seq
Forward (+)
61584014 .. 61587526
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG364300.1

Sequence Viewer

Length: 2337 bp
ATGGAAGAGGGATGGAAGAGAAATCGTGATCTTTCCCGAAGCAGAAATGATGCGGTCTGCACTGTTGAGACGCAAACAGGAGGTCATGACCGGAAGCGGAAGAACGAAAACCATAATGTTGAAAAGAAGGGAACCGACTCCGCTGTTGTATTATCAAGTGGGTCAGGCATTGATGATTGTATGACATTACCCGGTGGTAAGGAAGAATCAGACAGTCAGGTTACAATCAGGACAGCCTGCCGAGGAAAACACTTCACAAAAACTATGTCTTCCCTATCAGCTGGAAAGTTAGTTGCAACAATAGAAATGGGGTTTGGGTCACTTTATGAATTTCGCTGTACGAAAGTGAATCTCCCACTTTGCCAAGTGCTGGTTGAAAATTTTGACGTGGCGAACTCAAGCATCAACATTCATGGAAGGAACCTGACAATCACACATGAAGACTTTGAACGCATAATGGGCGTTAGGAATGGAGGTTGTGATGTGGAGGTTGAAGGAAACACCGAGGACCCTGATATATTGGCCCTGGAGAGGAAGATTTCGGGGAAGGAGAATCAGATAACAATACATGGATTGAGGAGGGTGCTGATTGAGTCTGAAAGCGCTGATGAGATATTTAGGATCAGCTTTGCCTTGTATGCCCTTGCAACCCTGCTATCTCCAGTAACAGGAATCCATGTTGAACGAAGATATCTTATTCCACTTAAGGATCCAAATGGCCTGTGTTCAAAAAACTGGGCAAAGTTTGCATTTGATAAGCTCGTTGAAGGGGTGTCATTGTTTCAGGGCACGGGGATTGGATTGGCCGGAGGTTGTATTCTGTTCCTTCAGTTGTTCTATCTGGACGTTGTTAGCAATGGCATGTTTGTTTTGCCGAAGACGGTGAAACCTGTTATGATATGGGGCGCGGACGAGGCAAAGAAAATTTATGAGCAGGTGGAGAGCATGGGGGGATGGAAAAGTGAGTCTGTTTATGTGACAAAGAGGTATTTGTGGGACAGAACAATTCAGTTCAGTGGATCGGTTGATGCCAGCACAGGGATAAAAACCAATGTCGTGGAAGACTTGTCAGAAGTGATGGCTGATGTGGGTGTCGTTAAAGGGGACATCCGGAATCTAAAGGCAATGGTCGGTCAATTGGGACCGGATATGTGCCGTTTGAGGAGCGCAATTCTGACGTTAGAAACATCTCTTGAGAAGCTGAAGGCTGAGGGCCTCTGTCAGCTTGTTTCAGACACTATCATGGGAGTGTTTGAGGATAAGCAGAATGATTATGTGGGCAATGATGGGACTGATGTTTTTGTTGATGGTCAAAAGCAGCATGGTCCAGAATTTGAGTCAGATGATGATGGGATGCCTAATGCTAAATCCAAAATTGTCATTTCCAATGAGGTGGTAGCATACCGGGATCGCAGCACTGAGGTTGAGAGAAGTGAACAGACGAGGTTCGAAGCGGTGGCCGAGATTTCAGAGAGGGATGCATACTTATTGGCATATCTCTTCAGCAAGAAGGTTTCTACAGACGACAGTTTTGGGAGCAACGAAGTTGCTAGGTTCGAGGATTCAGGTGTATCTCGCTGGGACCTGAGCTGCTTGTCCCCAACGCAGTCGTTGACTGCCGAGGTTGTCAACATATCGGCTGCGTACTTGTGCCAGAGGGGATCTGAGAACTGGTTCTTGCCAGCTACAGTGTCGGAGCGTGCTAAGGAGATTTCGGCAGGTATGCTAGTGGAAGCTATTGTGCCTTCGACCATTACACTCTGCAAACTGGGAAGATTTATTGGCCGATTATTGTCATGCAATAAGATGTTCCTCCCCATCCATGACGGGGTTGTGAAGCATTGGTTTTTGGCTGTGGTGAACATACCGGACGCCGTGTGTGAAATATGGGACAGCAACCCTGTTGATTCTGCTAATACACGCAGGCAGGAATATGCCATTGCATCGATGTGTTTGCTTGAAAAAGTATTTGGCAATGAACTGCGAATGGCACCCGACCTGTACGCACGGTTTGGATCATTCTCCATTAGTTATCCAGAGTCTTGCCCTCTGCATCCCAGATCTGAAGACTCCGGAATATTTGTGATAAGAAACATGCAGTTTTACAGACAGCGGTGGTACGTAGGGTTTAACTCCGGCGACCAGAGGGTTCGTATGGCACTTGAGATTGTCAATCACCCTCACAATGAAATTCGTGAACGGGTGTGGAGTGCCGCCGCCGAGGAAGTCCCATATGATGTACCTACCACGGGCGTGCCACCATTATCTCTGAAGGAGGATGCAGTTCTCCCAACTTCGGGCATGAAGTTCAATCCACGCCGGTCCAGGCGCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

778

Amino Acids

86.56

Weight (kDa)

5.46

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 600 - 703 3.5e-09 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 925
Acc36I ACCTGC 2 cut(s) 925, 1709
AccB1I GGYRCC 1 cut(s) 1990
AccB7I CCANNNNNTGG 1 cut(s) 370
AccII CGCG 2 cut(s) 908, 2331
AccIII TCCGGA 2 cut(s) 1110, 2072
AciI CCGC 9 cut(s) 53, 97, 141, 908, 1454, 2113, 2214, 2217, 2331
AclWI GGATC 7 cut(s) 629, 704, 717, 1027, 1416, 1669, 2023
AcoI YGGCCR 3 cut(s) 804, 1458, 1783
AcsI RAATTY 5 cut(s) 329, 379, 924, 1331, 2190
AcuI CTGAAG 5 cut(s) 812, 1223, 1486, 2085, 2291
AcyI GRCGYC 1 cut(s) 1872
AfaI GTAC 5 cut(s) 340, 1646, 2003, 2120, 2241
AfeI AGCGCT 1 cut(s) 604
AfiI CCNNNNNNNGG 8 cut(s) 370, 531, 668, 1038, 1828, 2249, 2296, 2297
AflII CTTAAG 1 cut(s) 704
AgsI TTSAA 9 cut(s) 122, 377, 449, 494, 683, 729, 767, 1961, 2311
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 2 cut(s) 525, 2324
AjuI GAANNNNNNNTTGG 4 cut(s) 297, 329, 1953, 1985
AleI CACNNNNGTG 1 cut(s) 2252
AluBI AGCT 8 cut(s) 281, 627, 760, 1201, 1225, 1590, 1685, 1736
AluI AGCT 8 cut(s) 281, 627, 760, 1201, 1225, 1590, 1685, 1736
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 7 cut(s) 629, 704, 717, 1027, 1416, 1669, 2023
Aor13HI TCCGGA 2 cut(s) 1110, 2072
Aor51HI AGCGCT 1 cut(s) 604
AoxI GGCC 6 cut(s) 522, 718, 804, 1213, 1458, 1783
ApeKI GCWGC 4 cut(s) 1318, 1413, 1590, 1640
ApoI RAATTY 5 cut(s) 329, 379, 924, 1331, 2190
ArsI GACNNNNNNTTYG 6 cut(s) 67, 99, 251, 283, 1514, 1546
Asp700I GAANNNNTTC 1 cut(s) 1673
AspLEI GCGC 4 cut(s) 605, 908, 1169, 2331
AspS9I GGNCC 7 cut(s) 508, 523, 1142, 1213, 1325, 1582, 2322
AsuC2I CCSGG 2 cut(s) 192, 1406
AsuHPI GGTGA 3 cut(s) 895, 1870, 2168
AsuII TTCGAA 1 cut(s) 1449
AvaII GGWCC 5 cut(s) 508, 1142, 1325, 1582, 2322
BaeGI GKGCMC 1 cut(s) 791
BamHI GGATCC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 1990
BbsI GAAGAC 5 cut(s) 261, 447, 884, 1068, 2073
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 4 cut(s) 1330, 1425, 1577, 1627
BccI CCATC 7 cut(s) 6, 948, 1072, 1280, 1301, 1343, 1826
BceAI ACGGC 2 cut(s) 1140, 1859
BcgI CGANNNNNNTGC 2 cut(s) 1936, 1970
BciT130I CCWGG 2 cut(s) 527, 2326
BcnI CCSGG 2 cut(s) 192, 1406
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 1551, 1727
BfmI CTRYAG 2 cut(s) 1518, 1686
BfoI RGCGCY 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 704
BfuAI ACCTGC 2 cut(s) 925, 1709
BglII AGATCT 1 cut(s) 2060
BisI GCNGC 6 cut(s) 1319, 1414, 1591, 1641, 2214, 2217
BlsI GCNGC 6 cut(s) 1320, 1415, 1592, 1642, 2215, 2218
Bme1390I CCNGG 4 cut(s) 192, 527, 1406, 2326
Bme18I GGWCC 5 cut(s) 508, 1142, 1325, 1582, 2322
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 7 cut(s) 508, 523, 1142, 1213, 1325, 1582, 2322
BmiI GGNNCC 7 cut(s) 133, 422, 510, 711, 1143, 1583, 1992
BmrFI CCNGG 4 cut(s) 192, 527, 1406, 2326
BmrI ACTGGG 2 cut(s) 745, 1778
BmsI GCATC 8 cut(s) 40, 411, 1018, 1344, 1468, 1952, 2062, 2269
BmuI ACTGGG 2 cut(s) 745, 1778
BpiI GAAGAC 5 cut(s) 261, 447, 884, 1068, 2073
BpmI CTGGAG 2 cut(s) 548, 645
Bpu10I CCTNAGC 3 cut(s) 1209, 1586, 1704
Bpu14I TTCGAA 1 cut(s) 1449
BpuEI CTTGAG 3 cut(s) 382, 1214, 2183
BpuMI CCSGG 2 cut(s) 192, 1406
Bsa29I ATCGAT 1 cut(s) 1946
BsaAI YACGTR 1 cut(s) 2122
BsaHI GRCGYC 1 cut(s) 1872
BsaJI CCNNGG 6 cut(s) 241, 504, 525, 1620, 2220, 2247
BsaWI WCCGGW 5 cut(s) 90, 1110, 1144, 1867, 2072
Bsc4I CCNNNNNNNGG 8 cut(s) 370, 531, 668, 1038, 1828, 2249, 2296, 2297
Bse118I RCCGGY 1 cut(s) 2319
Bse1I ACTGG 4 cut(s) 662, 740, 1676, 1773
Bse3DI GCAATG 5 cut(s) 862, 1131, 1288, 1938, 1981
BseAI TCCGGA 2 cut(s) 1110, 2072
BseBI CCWGG 2 cut(s) 527, 2326
BseCI ATCGAT 1 cut(s) 1946
BseDI CCNNGG 6 cut(s) 241, 504, 525, 1620, 2220, 2247
BseGI GGATG 8 cut(s) 17, 959, 1107, 1359, 1483, 1818, 2053, 2284
BseLI CCNNNNNNNGG 8 cut(s) 370, 531, 668, 1038, 1828, 2249, 2296, 2297
BseMI GCAATG 5 cut(s) 862, 1131, 1288, 1938, 1981
BseMII CTCAG 4 cut(s) 1200, 1410, 1577, 1656
BseNI ACTGG 4 cut(s) 662, 740, 1676, 1773
BseRI GAGGAG 2 cut(s) 592, 1177
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 4 cut(s) 1330, 1425, 1577, 1627
BseYI CCCAGC 1 cut(s) 1578
BsgI GTGCAG 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 908, 2331
BshFI GGCC 6 cut(s) 524, 720, 806, 1215, 1460, 1785
BshNI GGYRCC 1 cut(s) 1990
BshVI ATCGAT 1 cut(s) 1946
BslFI GGGAC 8 cut(s) 1010, 1118, 1155, 1303, 1582, 1595, 1904, 2213
BslI CCNNNNNNNGG 8 cut(s) 370, 531, 668, 1038, 1828, 2249, 2296, 2297
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 8 cut(s) 1010, 1118, 1155, 1303, 1582, 1595, 1904, 2213
BsnI GGCC 6 cut(s) 524, 720, 806, 1215, 1460, 1785
Bsp119I TTCGAA 1 cut(s) 1449
Bsp1286I GDGCHC 1 cut(s) 791
Bsp13I TCCGGA 2 cut(s) 1110, 2072
Bsp143I GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
BspACI CCGC 9 cut(s) 53, 97, 141, 908, 1454, 2113, 2214, 2217, 2331
BspANI GGCC 6 cut(s) 524, 720, 806, 1215, 1460, 1785
BspCNI CTCAG 4 cut(s) 1201, 1411, 1578, 1657
BspDI ATCGAT 1 cut(s) 1946
BspEI TCCGGA 2 cut(s) 1110, 2072
BspFNI CGCG 2 cut(s) 908, 2331
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 7 cut(s) 133, 422, 510, 711, 1143, 1583, 1992
BspMI ACCTGC 2 cut(s) 925, 1709
BspPI GGATC 7 cut(s) 629, 704, 717, 1027, 1416, 1669, 2023
BspT104I TTCGAA 1 cut(s) 1449
BspT107I GGYRCC 1 cut(s) 1990
BspTI CTTAAG 1 cut(s) 704
BsrDI GCAATG 5 cut(s) 862, 1131, 1288, 1938, 1981
BsrFI RCCGGY 1 cut(s) 2319
BsrI ACTGG 4 cut(s) 662, 740, 1676, 1773
BssAI RCCGGY 1 cut(s) 2319
BssECI CCNNGG 6 cut(s) 241, 504, 525, 1620, 2220, 2247
BssMI GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
BssNI GRCGYC 1 cut(s) 1872
Bst2UI CCWGG 2 cut(s) 527, 2326
Bst4CI ACNGT 6 cut(s) 64, 215, 883, 1529, 1690, 2010
Bst6I CTCTTC 2 cut(s) 11, 1505
BstACI GRCGYC 1 cut(s) 1872
BstAFI CTTAAG 1 cut(s) 704
BstAPI GCANNNNNTGC 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 2122
BstBI TTCGAA 1 cut(s) 1449
BstC8I GCNNGC 6 cut(s) 238, 1033, 1683, 1701, 1925, 2255
BstDEI CTNAG 5 cut(s) 1209, 1419, 1586, 1665, 1704
BstDSI CCRYGG 1 cut(s) 2247
BstF5I GGATG 8 cut(s) 17, 959, 1107, 1359, 1483, 1818, 2053, 2284
BstFNI CGCG 2 cut(s) 908, 2331
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 4 cut(s) 605, 908, 1169, 2331
BstKTI GATC 8 cut(s) 31, 624, 712, 1022, 1411, 1664, 2018, 2063
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
BstMWI GCNNNNNNNGC 4 cut(s) 459, 638, 746, 914
BstNI CCWGG 2 cut(s) 527, 2326
BstNSI RCATGY 2 cut(s) 865, 2098
BstSCI CCNGG 4 cut(s) 190, 525, 1404, 2324
BstSFI CTRYAG 2 cut(s) 1518, 1686
BstSLI GKGCMC 1 cut(s) 791
BstSNI TACGTA 1 cut(s) 2122
BstUI CGCG 2 cut(s) 908, 2331
BstV1I GCAGC 4 cut(s) 1330, 1425, 1577, 1627
BstV2I GAAGAC 5 cut(s) 261, 447, 884, 1068, 2073
BstX2I RGATCY 3 cut(s) 709, 1661, 2060
BstXI CCANNNNNNTGG 2 cut(s) 1057, 1393
BstYI RGATCY 3 cut(s) 709, 1661, 2060
Bsu15I ATCGAT 1 cut(s) 1946
BsuRI GGCC 6 cut(s) 524, 720, 806, 1215, 1460, 1785
BsuTUI ATCGAT 1 cut(s) 1946
BtgI CCRYGG 1 cut(s) 2247
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 8 cut(s) 17, 959, 1107, 1359, 1483, 1818, 2053, 2284
BtsIMutI CAGTG 4 cut(s) 60, 1021, 1416, 1695
BveI ACCTGC 2 cut(s) 925, 1709
Cac8I GCNNGC 6 cut(s) 238, 1033, 1683, 1701, 1925, 2255
CciI TCATGA 1 cut(s) 85
CfoI GCGC 4 cut(s) 605, 908, 1169, 2331
Cfr10I RCCGGY 1 cut(s) 2319
Cfr13I GGNCC 7 cut(s) 508, 523, 1142, 1213, 1325, 1582, 2322
ClaI ATCGAT 1 cut(s) 1946
CseI GACGC 2 cut(s) 79, 1880
Csp6I GTAC 5 cut(s) 339, 1645, 2002, 2119, 2240
CviQI GTAC 5 cut(s) 339, 1645, 2002, 2119, 2240
DdeI CTNAG 5 cut(s) 1209, 1419, 1586, 1665, 1704
DpnI GATC 8 cut(s) 30, 623, 711, 1021, 1410, 1663, 2017, 2062
DpnII GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
EaeI YGGCCR 3 cut(s) 804, 1458, 1783
Eam1104I CTCTTC 2 cut(s) 11, 1505
EarI CTCTTC 2 cut(s) 11, 1505
Eco105I TACGTA 1 cut(s) 2122
Eco32I GATATC 1 cut(s) 692
Eco47I GGWCC 5 cut(s) 508, 1142, 1325, 1582, 2322
Eco47III AGCGCT 1 cut(s) 604
Eco57I CTGAAG 5 cut(s) 812, 1223, 1486, 2085, 2291
EcoO109I RGGNCCY 3 cut(s) 508, 1213, 1582
EcoRII CCWGG 2 cut(s) 525, 2324
EcoRV GATATC 1 cut(s) 692
EcoT22I ATGCAT 1 cut(s) 1483
Esp3I CGTCTC 1 cut(s) 62
FaqI GGGAC 8 cut(s) 1010, 1118, 1155, 1303, 1582, 1595, 1904, 2213
FauNDI CATATG 1 cut(s) 2233
Fnu4HI GCNGC 6 cut(s) 1319, 1414, 1591, 1641, 2214, 2217
FokI GGATG 8 cut(s) 24, 966, 1094, 1366, 1490, 1805, 2040, 2291
Fsp4HI GCNGC 6 cut(s) 1319, 1414, 1591, 1641, 2214, 2217
FspBI CTAG 2 cut(s) 1551, 1727
GlaI GCGC 4 cut(s) 604, 907, 1168, 2330
GluI GCNGC 6 cut(s) 1319, 1414, 1591, 1641, 2214, 2217
GsaI CCCAGC 1 cut(s) 1582
GsuI CTGGAG 2 cut(s) 548, 645
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 6 cut(s) 524, 720, 806, 1215, 1460, 1785
HgaI GACGC 2 cut(s) 79, 1880
HhaI GCGC 4 cut(s) 605, 908, 1169, 2331
Hin1I GRCGYC 1 cut(s) 1872
Hin6I GCGC 4 cut(s) 603, 906, 1167, 2329
HinP1I GCGC 4 cut(s) 603, 906, 1167, 2329
HincII GTYRAC 2 cut(s) 1614, 1630
HindII GTYRAC 2 cut(s) 1614, 1630
HphI GGTGA 3 cut(s) 895, 1870, 2168
Hpy166II GTNNAC 5 cut(s) 1436, 1614, 1630, 1861, 2198
Hpy8I GTNNAC 5 cut(s) 1436, 1614, 1630, 1861, 2198
HpyCH4III ACNGT 6 cut(s) 64, 215, 883, 1529, 1690, 2010
HpyCH4IV ACGT 4 cut(s) 387, 846, 1178, 2121
HpyF10VI GCNNNNNNNGC 4 cut(s) 459, 638, 746, 914
HpyF3I CTNAG 5 cut(s) 1209, 1419, 1586, 1665, 1704
HpySE526I ACGT 4 cut(s) 387, 846, 1178, 2121
Hsp92I GRCGYC 1 cut(s) 1872
HspAI GCGC 4 cut(s) 603, 906, 1167, 2329
Kpn2I TCCGGA 2 cut(s) 1110, 2072
Kzo9I GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
LmnI GCTCC 3 cut(s) 1164, 1536, 1696
Lsp1109I GCAGC 4 cut(s) 1330, 1425, 1577, 1627
LweI GCATC 8 cut(s) 40, 411, 1018, 1344, 1468, 1952, 2062, 2269
MaeI CTAG 2 cut(s) 1551, 1727
MaeII ACGT 4 cut(s) 387, 846, 1178, 2121
MaeIII GTNAC 4 cut(s) 220, 318, 664, 976
MalI GATC 8 cut(s) 30, 623, 711, 1021, 1410, 1663, 2017, 2062
MboI GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
MfeI CAATTG 1 cut(s) 1136
MflI RGATCY 3 cut(s) 709, 1661, 2060
MhlI GDGCHC 1 cut(s) 791
MluCI AATT 9 cut(s) 329, 379, 924, 1005, 1136, 1170, 1331, 1374, 2190
MlyI GAGTC 6 cut(s) 131, 602, 974, 1346, 2048, 2063
MmeI TCCRAC 1 cut(s) 1674
Mph1103I ATGCAT 1 cut(s) 1483
MroI TCCGGA 2 cut(s) 1110, 2072
MroXI GAANNNNTTC 1 cut(s) 1673
MseI TTAA 3 cut(s) 705, 1098, 2130
MslI CAYNNNNRTG 4 cut(s) 1241, 1247, 1948, 2252
MspA1I CMGCKG 3 cut(s) 143, 281, 2113
MspCI CTTAAG 1 cut(s) 704
MspR9I CCNGG 4 cut(s) 192, 527, 1406, 2326
MunI CAATTG 1 cut(s) 1136
MvaI CCWGG 2 cut(s) 527, 2326
MvnI CGCG 2 cut(s) 908, 2331
MwoI GCNNNNNNNGC 4 cut(s) 459, 638, 746, 914
NciI CCSGG 2 cut(s) 192, 1406
NdeI CATATG 1 cut(s) 2233
NdeII GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
NlaIV GGNNCC 7 cut(s) 133, 422, 510, 711, 1143, 1583, 1992
NmeAIII GCCGAG 4 cut(s) 266, 1486, 1645, 2245
NmuCI GTSAC 2 cut(s) 318, 976
NsiI ATGCAT 1 cut(s) 1483
NspI RCATGY 2 cut(s) 865, 2098
NspV TTCGAA 1 cut(s) 1449
OliI CACNNNNGTG 1 cut(s) 2252
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 1673
PfeI GAWTC 7 cut(s) 206, 349, 553, 672, 1114, 1562, 1907
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 6 cut(s) 1320, 1415, 1592, 1642, 2215, 2218
PleI GAGTC 6 cut(s) 131, 601, 973, 1345, 2047, 2063
PpsI GAGTC 6 cut(s) 131, 601, 973, 1345, 2047, 2063
Ppu21I YACGTR 1 cut(s) 2122
PpuMI RGGWCCY 2 cut(s) 508, 1582
Psp5II RGGWCCY 2 cut(s) 508, 1582
Psp6I CCWGG 2 cut(s) 525, 2324
PspFI CCCAGC 1 cut(s) 1578
PspGI CCWGG 2 cut(s) 525, 2324
PspN4I GGNNCC 7 cut(s) 133, 422, 510, 711, 1143, 1583, 1992
PspPI GGNCC 7 cut(s) 508, 523, 1142, 1213, 1325, 1582, 2322
PspPPI RGGWCCY 2 cut(s) 508, 1582
PsuI RGATCY 3 cut(s) 709, 1661, 2060
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 5 cut(s) 340, 1646, 2003, 2120, 2241
RsaNI GTAC 5 cut(s) 339, 1645, 2002, 2119, 2240
RseI CAYNNNNRTG 4 cut(s) 1241, 1247, 1948, 2252
SaqAI TTAA 3 cut(s) 705, 1098, 2130
SatI GCNGC 6 cut(s) 1319, 1414, 1591, 1641, 2214, 2217
Sau3AI GATC 8 cut(s) 28, 621, 709, 1019, 1408, 1661, 2015, 2060
Sau96I GGNCC 7 cut(s) 508, 523, 1142, 1213, 1325, 1582, 2322
SchI GAGTC 6 cut(s) 131, 602, 974, 1346, 2048, 2063
ScrFI CCNGG 4 cut(s) 192, 527, 1406, 2326
SduI GDGCHC 1 cut(s) 791
SfaNI GCATC 8 cut(s) 40, 411, 1018, 1344, 1468, 1952, 2062, 2269
SfcI CTRYAG 2 cut(s) 1518, 1686
SfuI TTCGAA 1 cut(s) 1449
SinI GGWCC 5 cut(s) 508, 1142, 1325, 1582, 2322
SmiMI CAYNNNNRTG 4 cut(s) 1241, 1247, 1948, 2252
SmlI CTYRAG 4 cut(s) 397, 704, 1193, 2162
SmoI CTYRAG 4 cut(s) 397, 704, 1193, 2162
SnaBI TACGTA 1 cut(s) 2122
Sse9I AATT 9 cut(s) 329, 379, 924, 1005, 1136, 1170, 1331, 1374, 2190
SsiI CCGC 9 cut(s) 53, 97, 141, 908, 1454, 2113, 2214, 2217, 2331
SspI AATATT 1 cut(s) 2079
SspMI CTAG 2 cut(s) 1551, 1727
StyD4I CCNGG 4 cut(s) 190, 525, 1404, 2324
TaaI ACNGT 6 cut(s) 64, 215, 883, 1529, 1690, 2010
TaiI ACGT 4 cut(s) 390, 849, 1181, 2124
TaqI TCGA 4 cut(s) 1449, 1557, 1748, 1946
TaqII GACCGA 1 cut(s) 1121
TasI AATT 9 cut(s) 329, 379, 924, 1005, 1136, 1170, 1331, 1374, 2190
TauI GCSGC 2 cut(s) 2216, 2219
TfiI GAWTC 7 cut(s) 206, 349, 553, 672, 1114, 1562, 1907
Tru1I TTAA 3 cut(s) 705, 1098, 2130
Tru9I TTAA 3 cut(s) 705, 1098, 2130
TscAI CASTG 4 cut(s) 67, 1021, 1423, 1695
TseFI GTSAC 2 cut(s) 318, 976
TseI GCWGC 4 cut(s) 1318, 1413, 1590, 1640
Tsp45I GTSAC 2 cut(s) 318, 976
TspDTI ATGAA 6 cut(s) 342, 401, 453, 1992, 2202, 2318
TspRI CASTG 4 cut(s) 67, 1021, 1423, 1695
Van91I CCANNNNNTGG 1 cut(s) 370
Vha464I CTTAAG 1 cut(s) 704
VpaK11BI GGWCC 5 cut(s) 508, 1142, 1325, 1582, 2322
XapI RAATTY 5 cut(s) 329, 379, 924, 1331, 2190
XceI RCATGY 2 cut(s) 865, 2098
XmnI GAANNNNTTC 1 cut(s) 1673
XspI CTAG 2 cut(s) 1551, 1727
Zsp2I ATGCAT 1 cut(s) 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.