Rroxscaffold_2G00113740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000030
Physical Location & Seq
Forward (+)
39478720 .. 39480524
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113740.1

Sequence Viewer

Length: 1539 bp
ATGGGAATGGAAGGGAAGGCCATCTCCTTGAAAAGTTTGCAATGGGCGGCATCATGGGGGATAAGGGCTCAGCCTCATATTGACTTCATCAACACAGTCCGGGCCCTTCCCATCGATAAGATTTCAGCTATATGGGAGATGGGTTTTGGTTCACTTCAGAGTATAGGATGCCCTCAGCTACATGACCAGGTATGGAAAATGATGGTCGACGGCCTTGAACCTCTGAATGAAACAGTGGTTATACATGGAAAGACTTTCGGCATACATGCATCTGATTTTGAGCGTATTATGGGAGTCAGAGACGGGGGACTTGATTTAGCTGGTTTAGATGGGAACATAACATTATCCTCGTTGAAGGAGGTTGTTCTTCGAAGGGTGGATGTGGACCAAATATTTAGAGTGGCCTACGCATTGTACGCAATGTCCGCCTTATTGTGCCCAACCAATGGTGAAGGGGTCGACTACATATTGCTTATGGCCATGATAACAAGCAGGTCGATAGGGGATCTTAATTGGGCTACATATTGCTTCAGCAAGTTGATGGATGGTGTACTCACAAGGTCGCGCAACGAATATGCCATTGGCGGTGCATGTTTCTTGTTCCTCCAAGTGTTTTACTTTGAAGCCGTTGGGACAAGTTTGGGATGGGTTGACAAGACAATCACACCAGTCATATATTGGGGAGTTGACAAGGCCGCAAATTTGGTGCAGTTCGTTAAGAATAATGGAGGCGTTACCTCAGAAAATAACAGAGTCTGGGCACATGAGATAGGTGGCACTTGGATGAAAAAGAATGCTGAGAACTATGAAGGTGGGATAACAGTGGAGGAAACAGATTTTGCACAGGTGGAGGAGATGTGGTCAGAGATAGAAAGTGTGAAAAATGATGTGCACTATATGAAGGAAAACATAGCTCTTATTGCAAAATTGGGTGAAATGATTGAAGGAGTTCGAACTGAGATTTTGTCAGCTAGGAAGGAAAACGTGACCGCTGTTGCCGCAGAGGTATTCAAACAATACAAACCCCAATTAGATCATATGCTTGGTGTCAGACCTAAAGTCATGGAGAGAGCAATAACAGAGGCAAGGAGTAACAGCGCACACTTCAATGGGGGAAAGGATTCTAAATCTAAAGGGGATAATTCACAGGATTCAAGTTGCATGATCTTATATTGCAATAATGTCAATGGACAGACAATACATAATGATCAGGTCAAGGTGAACGGGAACAATGGAAAAGAACTTCACCCAACTCTATCTGATTGTTCAGTGAGCCCCATTGAGGGTCCAAAGGCTATGCGTAGGAGCAGTAAGGAGAAAAATAAAAAGATACCAACTGTGGCACCTAGTCACATTGTTCGTGCACTATTTAAGAAGAGTGCAATTCCGGGTAGAAAGAAGTCACATTTGAAGGGGTGGGGGAAGGGGACTATTGATGCTGGCCCATTCTGTGTCAATCGGGGTACTTCTAAGGACGACATTGATCTTTTGAAGTTTATATTTATGGATATGGAGCAGAATGATTTGGACTACCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

512

Amino Acids

56.83

Weight (kDa)

6.65

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09630 FvH4_1g25481 FvH4_2g06390 FvH4_2g09470 FvH4_2g11952 FvH4_2g25151 FvH4_2g27901 FvH4_3g22392 FvH4_3g23130 FvH4_3g26751 FvH4_3g37244 FvH4_3g37260 FvH4_4g03329 FvH4_4g03350 FvH4_4g07720 FvH4_4g07721 FvH4_4g09520 FvH4_4g14081 FvH4_4g14090 FvH4_4g16060 FvH4_4g16061 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_4g21890 FvH4_5g19752 FvH4_5g19752 FvH4_5g19752 FvH4_5g33480 FvH4_6g25711 FvH4_6g25720 FvH4_6g40321 FvH4_6g40680 FvH4_6g40680 FvH4_7g05770 FvH4_7g05770 FvH4_7g06960 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g07131 FvH4_7g08580 FvH4_7g10221 FvH4_7g12251 FvH4_7g12251 FvH4_7g12251 FvH4_c19g00020
prunus_persica Prupe.3G127800_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.3G127900_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261000_v2.0.a1 Prupe.4G261400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0313581 RchiOBHm_Chr1g0347831 RchiOBHm_Chr1g0372251 RchiOBHm_Chr2g0120671 RchiOBHm_Chr2g0120681 RchiOBHm_Chr2g0155601 RchiOBHm_Chr2g0161371 RchiOBHm_Chr2g0171911 RchiOBHm_Chr3g0451001 RchiOBHm_Chr3g0478081 RchiOBHm_Chr3g0485951 RchiOBHm_Chr4g0396211 RchiOBHm_Chr4g0396221 RchiOBHm_Chr4g0413121 RchiOBHm_Chr4g0417291 RchiOBHm_Chr4g0423011 RchiOBHm_Chr4g0424781 RchiOBHm_Chr4g0427951 RchiOBHm_Chr4g0432021 RchiOBHm_Chr5g0012051 RchiOBHm_Chr6g0268131 RchiOBHm_Chr6g0268141 RchiOBHm_Chr6g0281911 RchiOBHm_Chr6g0285311 RchiOBHm_Chr7g0189591 RchiOBHm_Chr7g0189601 RchiOBHm_Chr7g0224131
rosa_laevigata RLG00000000963 RLG00000000967 RLG00000001615 RLG00000002043 RLG00000002094 RLG00000002112 RLG00000002404 RLG00000004455 RLG00000005527 RLG00000005655 RLG00000006174 RLG00000007767 RLG00000008355 RLG00000008585 RLG00000008588 RLG00000008683 RLG00000008813 RLG00000009112 RLG00000009252 RLG00000009280 RLG00000009413 RLG00000012815 RLG00000012845 RLG00000013323 RLG00000013324 RLG00000015631 RLG00000017303 RLG00000018309 RLG00000018310 RLG00000018442 RLG00000018443 RLG00000018702 RLG00000019612 RLG00000021285 RLG00000021286 RLG00000022541 RLG00000023201 RLG00000023427 RLG00000029113 RLG00000029669 RLG00000030439 RLG00000030440 RLG00000033139 RLG00000034155 RLG00000034156 RLG00000034157 RLG00000034189 RLG00000034333 RLG00000034334 RLG00000034402 RLG00000034483
rosa_multiflora Rmu_co8408521.1_g000001 Rmu_co8451191.1_g000001 Rmu_co8509671.1_g000001 Rmu_co8512787.1_g000002 Rmu_sc0000077.1_g000042 Rmu_sc0000279.1_g000028 Rmu_sc0000280.1_g000005 Rmu_sc0000280.1_g000013 Rmu_sc0000319.1_g000017 Rmu_sc0000319.1_g000018 Rmu_sc0000361.1_g000007 Rmu_sc0000381.1_g000022 Rmu_sc0000642.1_g000014 Rmu_sc0000931.1_g000013 Rmu_sc0000982.1_g000033 Rmu_sc0001554.1_g000014 Rmu_sc0001992.1_g000027 Rmu_sc0002045.1_g000030 Rmu_sc0002106.1_g000002 Rmu_sc0003179.1_g000034 Rmu_sc0003422.1_g000009 Rmu_sc0004125.1_g000004 Rmu_sc0004999.1_g000015 Rmu_sc0005394.1_g000005 Rmu_sc0005712.1_g000015 Rmu_sc0006373.1_g000010 Rmu_sc0006872.1_g000002 Rmu_sc0006872.1_g000004 Rmu_sc0007367.1_g000011 Rmu_sc0007367.1_g000012 Rmu_sc0007491.1_g000005 Rmu_sc0007705.1_g000008 Rmu_sc0007705.1_g000009 Rmu_sc0007877.1_g000016 Rmu_sc0012512.1_g000006 Rmu_sc0021854.1_g000001 Rmu_sc0028193.1_g000003 Rmu_sc0032675.1_g000001 Rmu_ssc0000158.1_g000019 Rmu_ssc0000387.1_g000020
rosa_roxburghii Rroxscaffold_1G00009730 Rroxscaffold_1G00017900 Rroxscaffold_1G00031860 Rroxscaffold_1G00036000 Rroxscaffold_1G00036390 Rroxscaffold_1G00069020 Rroxscaffold_1G00071750 Rroxscaffold_2G00080160 Rroxscaffold_2G00080340 Rroxscaffold_2G00080790 Rroxscaffold_2G00085870 Rroxscaffold_2G00109300 Rroxscaffold_2G00113740 Rroxscaffold_2G00113750 Rroxscaffold_2G00113760 Rroxscaffold_2G00116400 Rroxscaffold_2G00116870 Rroxscaffold_2G00116880 Rroxscaffold_2G00118190 Rroxscaffold_2G00118200 Rroxscaffold_2G00118650 Rroxscaffold_2G00129110 Rroxscaffold_2G00134740 Rroxscaffold_2G00140920 Rroxscaffold_4G00285970 Rroxscaffold_4G00312160 Rroxscaffold_4G00322340 Rroxscaffold_5G00349950 Rroxscaffold_6G00430610 Rroxscaffold_7G00162630 Rroxscaffold_7G00162640 Rroxscaffold_7G00164320 Rroxscaffold_7G00214930
rosa_rugosa Rorug01G0012500 Rorug01G0018000 Rorug01G0019000 Rorug01G0019000 Rorug01G0070900 Rorug01G0094400 Rorug02G0043200 Rorug03G0329700 Rorug03G0329800 Rorug03G0329900 Rorug03G0332900 Rorug03G0343500 Rorug03G0343600 Rorug03G0343700 Rorug04G0032000 Rorug04G0065800 Rorug05G0102700 Rorug05G0106200 Rorug05G0256700 Rorug05G0256700 Rorug05G0439000 Rorug05G0540900 Rorug06G0055100 Rorug06G0060400 Rorug06G0170800 Rorug06G0184400 Rorug06G0439700 Rorug07G0182300 Rorug07G0182400 Rorug07G0182500 Rorug07G0208100 Rorug07G0208200 Rorug07G0208200 Rorug07G0283700.1 Rorug07G0283800
rosa_samantha Rh1AG090000 Rh1AG169000 Rh1BG060800 Rh1BG060900 Rh1BG070000 Rh1BG407100 Rh1BG407200 Rh1BG407400 Rh1BG407500 Rh1CG028100 Rh1CG028200 Rh1CG040100 Rh1CG050100 Rh1CG055500 Rh1CG156800 Rh1CG421400 Rh1CG421500 Rh1CG421600 Rh1DG029300 Rh1DG054600 Rh1DG054700 Rh1DG059400 Rh1DG177400 Rh1DG438200 Rh1DG438300 Rh1DG438500 Rh1DG438600 Rh1DG438700 Rh2AG286700 Rh2AG286800 Rh2AG286900 Rh2AG311900 Rh2AG322600 Rh2AG353300 Rh2AG353400 Rh2AG560900 Rh2AG642800 Rh2AG642900 Rh2AG643000 Rh2AG643100 Rh2AG647000 Rh2BG288800 Rh2BG317900 Rh2BG394800 Rh2BG394900 Rh2BG594000 Rh2BG657700 Rh2CG299000 Rh2CG299100 Rh2CG300200 Rh2DG102500 Rh2DG284000 Rh2DG312200 Rh2DG312300 Rh2DG336300 Rh2DG336400 Rh2DG337200 Rh2DG571300 Rh3AG246800 Rh3AG272200 Rh3BG121800 Rh3BG249400 Rh3BG265300 Rh3BG341500 Rh3BG348700 Rh3CG301300 Rh3CG307800 Rh3CG307900 Rh3CG308100 Rh3DG144400 Rh3DG251600 Rh3DG297700 Rh3DG301700 Rh3DG305100 Rh3DG340900 Rh4AG149000 Rh4AG248900 Rh4AG336100 Rh4BG044000 Rh4BG111400 Rh4BG133400 Rh4BG182300 Rh4BG219600 Rh4BG219700 Rh4BG254300 Rh4BG388300 Rh4BG388600 Rh4CG126200 Rh4CG155800 Rh4CG257000 Rh4CG402900 Rh4CG403000 Rh4DG005400 Rh4DG057400 Rh4DG057500 Rh4DG057700 Rh4DG120700 Rh4DG280800 Rh4DG338600 Rh5AG057600 Rh5AG057700 Rh5AG057800 Rh5AG284700 Rh5AG284800 Rh5AG305600 Rh5AG364300 Rh5AG365100 Rh5AG365200 Rh5AG516000 Rh5AG516200 Rh5BG157600 Rh5BG235200 Rh5BG235400 Rh5BG308900 Rh5BG373800 Rh5BG414500 Rh5BG538800 Rh5CG102300 Rh5CG248400 Rh5CG249300 Rh5CG249400 Rh5CG326300 Rh5CG326400 Rh5CG366400 Rh5CG366500 Rh5CG439100 Rh5CG439200 Rh5CG497700 Rh5CG562500 Rh5CG567300 Rh5DG179600 Rh5DG179700 Rh5DG239900 Rh5DG299700 Rh5DG319400 Rh5DG319500 Rh6AG173400 Rh6AG175300 Rh6AG314800 Rh6AG405000 Rh6BG067300 Rh6BG067400 Rh6BG075300 Rh6BG101700 Rh6BG134300 Rh6BG324500 Rh6CG087200 Rh6CG132400 Rh6CG151800 Rh6CG151900 Rh6CG200100 Rh6CG205500 Rh6CG419400 Rh6CG419500 Rh6DG081400 Rh6DG119900 Rh6DG120000 Rh6DG191500 Rh6DG199900 Rh6DG251900 Rh6DG252000 Rh6DG498400 Rh7AG274800 Rh7AG283100 Rh7AG352600 Rh7AG364900 Rh7AG386800 Rh7BG321800 Rh7BG341100 Rh7CG294000 Rh7CG368900 Rh7CG369900 Rh7CG383700 Rh7CG406000 Rh7CG406100 Rh7DG106300 Rh7DG106400 Rh7DG286300 Rh7DG346900 Rh7DG353400 Rh7DG360000 Rh7DG361700 Rh7DG362200 Rh7DG362600 Rh7DG362900 Rh7DG363400
rosa_wichuraiana Rw0G000990 Rw0G001740 Rw0G002300 Rw0G002310 Rw0G007890 Rw0G007900 Rw0G023450 Rw0G023460 Rw1G000300 Rw1G007140 Rw1G007170 Rw1G008970 Rw1G010460 Rw1G039090 Rw1G039100 Rw2G012530 Rw2G016610 Rw2G023010 Rw2G031730 Rw3G014310 Rw4G008550 Rw4G010240 Rw4G012160 Rw4G024150 Rw5G009090 Rw5G047250 Rw5G048500 Rw5G050510 Rw6G006430 Rw6G006440 Rw6G006450 Rw6G013330 Rw6G016560 Rw6G021330 Rw6G024630 Rw6G035440 Rw6G041540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 1342
AccB7I CCANNNNNTGG 1 cut(s) 446
AccI GTMKAC 2 cut(s) 207, 459
AccII CGCG 1 cut(s) 565
AciI CCGC 6 cut(s) 47, 426, 585, 696, 990, 999
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 2 cut(s) 140, 514
AfaI GTAC 3 cut(s) 416, 552, 1465
AfiI CCNNNNNNNGG 3 cut(s) 446, 1282, 1283
AgeI ACCGGT 1 cut(s) 1533
AhdI GACNNNNNGTC 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 5 cut(s) 128, 178, 320, 914, 971
AluI AGCT 5 cut(s) 128, 178, 320, 914, 971
Alw21I GWGCWC 2 cut(s) 894, 1366
Alw26I GTCTC 1 cut(s) 294
Alw44I GTGCAC 2 cut(s) 890, 1362
AlwI GGATC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 756
AoxI GGCC 7 cut(s) 18, 102, 211, 402, 477, 693, 1441
ApaI GGGCCC 1 cut(s) 106
ApaLI GTGCAC 2 cut(s) 890, 1362
ApoI RAATTY 1 cut(s) 700
AsiGI ACCGGT 1 cut(s) 1533
Asp700I GAANNNNTTC 2 cut(s) 948, 1120
AspLEI GCGC 2 cut(s) 567, 1100
AspS9I GGNCC 5 cut(s) 102, 103, 385, 1286, 1442
AsuC2I CCSGG 2 cut(s) 101, 1389
AsuHPI GGTGA 4 cut(s) 461, 944, 1231, 1238
AsuII TTCGAA 2 cut(s) 370, 952
AvaII GGWCC 2 cut(s) 385, 1286
BaeGI GKGCMC 5 cut(s) 106, 440, 763, 894, 1366
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 1342
BanII GRGCYC 3 cut(s) 70, 106, 1277
Bbv12I GWGCWC 2 cut(s) 894, 1366
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 8 cut(s) 29, 119, 133, 196, 323, 535, 539, 639
BceAI ACGGC 2 cut(s) 226, 611
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 1207
BcnI CCSGG 2 cut(s) 101, 1389
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 2 cut(s) 972, 1347
BfuAI ACCTGC 1 cut(s) 483
BisI GCNGC 3 cut(s) 48, 696, 999
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 3 cut(s) 49, 697, 1000
Bme1390I CCNGG 3 cut(s) 101, 188, 1389
Bme18I GGWCC 2 cut(s) 385, 1286
BmeRI GACNNNNNGTC 1 cut(s) 1058
BmgT120I GGNCC 5 cut(s) 102, 103, 385, 1286, 1442
BmiI GGNNCC 3 cut(s) 104, 1287, 1344
BmrFI CCNGG 3 cut(s) 101, 188, 1389
BmsI GCATC 4 cut(s) 59, 158, 278, 1426
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 2 cut(s) 370, 952
BpuMI CCSGG 2 cut(s) 101, 1389
Bsa29I ATCGAT 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 1533
BsaXI ACNNNNNCTCC 4 cut(s) 842, 845, 872, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 1282, 1283
Bse118I RCCGGY 1 cut(s) 1533
Bse1I ACTGG 1 cut(s) 668
Bse3DI GCAATG 2 cut(s) 47, 426
BseBI CCWGG 1 cut(s) 188
BseCI ATCGAT 1 cut(s) 114
BseGI GGATG 5 cut(s) 173, 385, 550, 650, 789
BseLI CCNNNNNNNGG 3 cut(s) 446, 1282, 1283
BseMI GCAATG 2 cut(s) 47, 426
BseMII CTCAG 5 cut(s) 83, 188, 753, 789, 948
BseNI ACTGG 1 cut(s) 668
BseRI GAGGAG 1 cut(s) 866
BseSI GKGCMC 5 cut(s) 106, 440, 763, 894, 1366
BsgI GTGCAG 1 cut(s) 728
Bsh1236I CGCG 1 cut(s) 565
BshFI GGCC 7 cut(s) 20, 104, 213, 404, 479, 695, 1443
BshNI GGYRCC 1 cut(s) 1342
BshTI ACCGGT 1 cut(s) 1533
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 894, 1366
BsiSI CCGG 3 cut(s) 100, 1388, 1534
BslFI GGGAC 3 cut(s) 321, 646, 1441
BslI CCNNNNNNNGG 3 cut(s) 446, 1282, 1283
BsmAI GTCTC 1 cut(s) 294
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 3 cut(s) 321, 646, 1441
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 7 cut(s) 20, 104, 213, 404, 479, 695, 1443
Bsp119I TTCGAA 2 cut(s) 370, 952
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 7 cut(s) 70, 106, 440, 763, 894, 1277, 1366
Bsp143I GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 6 cut(s) 47, 426, 585, 696, 990, 999
BspANI GGCC 7 cut(s) 20, 104, 213, 404, 479, 695, 1443
BspCNI CTCAG 5 cut(s) 82, 187, 752, 790, 949
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 104, 1287, 1344
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 1 cut(s) 513
BspT104I TTCGAA 2 cut(s) 370, 952
BspT107I GGYRCC 1 cut(s) 1342
BsrDI GCAATG 2 cut(s) 47, 426
BsrFI RCCGGY 1 cut(s) 1533
BsrI ACTGG 1 cut(s) 668
BssAI RCCGGY 1 cut(s) 1533
BssMI GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 4 cut(s) 97, 235, 823, 1339
Bst6I CTCTTC 1 cut(s) 1370
BstBI TTCGAA 2 cut(s) 370, 952
BstC8I GCNNGC 1 cut(s) 1441
BstDEI CTNAG 6 cut(s) 69, 174, 739, 798, 957, 1470
BstF5I GGATG 5 cut(s) 173, 385, 550, 650, 789
BstFNI CGCG 1 cut(s) 565
BstHHI GCGC 2 cut(s) 567, 1100
BstKTI GATC 5 cut(s) 508, 1036, 1167, 1210, 1486
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
BstMWI GCNNNNNNNGC 4 cut(s) 416, 425, 920, 998
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 2 cut(s) 269, 594
BstSCI CCNGG 3 cut(s) 99, 186, 1387
BstSLI GKGCMC 5 cut(s) 106, 440, 763, 894, 1366
BstUI CGCG 1 cut(s) 565
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 7 cut(s) 20, 104, 213, 404, 479, 695, 1443
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 5 cut(s) 173, 385, 550, 650, 789
BtsIMutI CAGTG 3 cut(s) 240, 828, 1275
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 1441
CaiI CAGNNNCTG 1 cut(s) 756
CfoI GCGC 2 cut(s) 567, 1100
Cfr10I RCCGGY 1 cut(s) 1533
Cfr13I GGNCC 5 cut(s) 102, 103, 385, 1286, 1442
ClaI ATCGAT 1 cut(s) 114
CsiI ACCWGGT 1 cut(s) 186
Csp6I GTAC 3 cut(s) 415, 551, 1464
CspAI ACCGGT 1 cut(s) 1533
CviAII CATG 9 cut(s) 54, 182, 245, 266, 481, 591, 764, 1063, 1162
CviQI GTAC 3 cut(s) 415, 551, 1464
DdeI CTNAG 6 cut(s) 69, 174, 739, 798, 957, 1470
DpnI GATC 5 cut(s) 507, 1035, 1166, 1209, 1485
DpnII GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
DriI GACNNNNNGTC 1 cut(s) 1058
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 1370
Eam1105I GACNNNNNGTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 1370
EciI GGCGGA 1 cut(s) 415
Eco24I GRGCYC 3 cut(s) 70, 106, 1277
Eco47I GGWCC 2 cut(s) 385, 1286
Eco57I CTGAAG 2 cut(s) 140, 514
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 3 cut(s) 70, 106, 1277
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 9 cut(s) 57, 185, 248, 269, 484, 594, 767, 1066, 1165
FaqI GGGAC 3 cut(s) 321, 646, 1441
FatI CATG 9 cut(s) 53, 181, 244, 265, 480, 590, 763, 1062, 1161
FauNDI CATATG 1 cut(s) 1038
FbaI TGATCA 1 cut(s) 1207
FblI GTMKAC 2 cut(s) 207, 459
Fnu4HI GCNGC 3 cut(s) 48, 696, 999
FokI GGATG 5 cut(s) 180, 392, 557, 657, 796
FriOI GRGCYC 3 cut(s) 70, 106, 1277
Fsp4HI GCNGC 3 cut(s) 48, 696, 999
FspBI CTAG 2 cut(s) 972, 1347
GlaI GCGC 2 cut(s) 566, 1099
GluI GCNGC 3 cut(s) 48, 696, 999
HaeIII GGCC 7 cut(s) 20, 104, 213, 404, 479, 695, 1443
HapII CCGG 3 cut(s) 100, 1388, 1534
HhaI GCGC 2 cut(s) 567, 1100
Hin1II CATG 9 cut(s) 57, 185, 248, 269, 484, 594, 767, 1066, 1165
Hin6I GCGC 2 cut(s) 565, 1098
HinP1I GCGC 2 cut(s) 565, 1098
HincII GTYRAC 4 cut(s) 208, 460, 652, 688
HindII GTYRAC 4 cut(s) 208, 460, 652, 688
HinfI GANTC 4 cut(s) 294, 753, 1121, 1151
HpaII CCGG 3 cut(s) 100, 1388, 1534
HphI GGTGA 4 cut(s) 461, 944, 1231, 1238
Hpy188I TCNGA 8 cut(s) 159, 225, 274, 299, 742, 865, 1052, 1261
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 4 cut(s) 97, 235, 823, 1339
HpyCH4IV ACGT 1 cut(s) 984
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 425, 920, 998
HpyF3I CTNAG 6 cut(s) 69, 174, 739, 798, 957, 1470
HpySE526I ACGT 1 cut(s) 984
Hsp92II CATG 9 cut(s) 57, 185, 248, 269, 484, 594, 767, 1066, 1165
HspAI GCGC 2 cut(s) 565, 1098
Ksp22I TGATCA 1 cut(s) 1207
Kzo9I GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
LmnI GCTCC 2 cut(s) 1305, 1513
LweI GCATC 4 cut(s) 59, 158, 278, 1426
MabI ACCWGGT 1 cut(s) 186
MaeI CTAG 2 cut(s) 972, 1347
MaeII ACGT 1 cut(s) 984
MaeIII GTNAC 5 cut(s) 733, 985, 1091, 1349, 1401
MalI GATC 5 cut(s) 507, 1035, 1166, 1209, 1485
MboI GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
MboII GAAGA 2 cut(s) 359, 1387
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 7 cut(s) 70, 106, 440, 763, 894, 1277, 1366
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 6 cut(s) 511, 700, 926, 1028, 1141, 1383
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 2 cut(s) 303, 762
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 271
MroXI GAANNNNTTC 2 cut(s) 948, 1120
MscI TGGCCA 1 cut(s) 479
MseI TTAA 3 cut(s) 510, 717, 1371
MslI CAYNNNNRTG 2 cut(s) 782, 1107
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 3 cut(s) 100, 1388, 1534
MspR9I CCNGG 3 cut(s) 101, 188, 1389
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 565
MwoI GCNNNNNNNGC 4 cut(s) 416, 425, 920, 998
NciI CCSGG 2 cut(s) 101, 1389
NdeI CATATG 1 cut(s) 1038
NdeII GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
NlaIII CATG 9 cut(s) 57, 185, 248, 269, 484, 594, 767, 1066, 1165
NlaIV GGNNCC 3 cut(s) 104, 1287, 1344
NmuCI GTSAC 3 cut(s) 985, 1349, 1401
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 2 cut(s) 269, 594
NspV TTCGAA 2 cut(s) 370, 952
PctI GAATGC 1 cut(s) 799
PdmI GAANNNNTTC 2 cut(s) 948, 1120
PfeI GAWTC 2 cut(s) 1121, 1151
PflMI CCANNNNNTGG 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 1533
PkrI GCNGC 3 cut(s) 49, 697, 1000
PleI GAGTC 2 cut(s) 302, 761
PpsI GAGTC 2 cut(s) 302, 761
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 104, 1287, 1344
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 5 cut(s) 102, 103, 385, 1286, 1442
PstNI CAGNNNCTG 1 cut(s) 756
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 3 cut(s) 416, 552, 1465
RsaNI GTAC 3 cut(s) 415, 551, 1464
RseI CAYNNNNRTG 2 cut(s) 782, 1107
SalI GTCGAC 2 cut(s) 206, 458
SaqAI TTAA 3 cut(s) 510, 717, 1371
SatI GCNGC 3 cut(s) 48, 696, 999
Sau3AI GATC 5 cut(s) 505, 1033, 1164, 1207, 1483
Sau96I GGNCC 5 cut(s) 102, 103, 385, 1286, 1442
SchI GAGTC 2 cut(s) 303, 762
ScrFI CCNGG 3 cut(s) 101, 188, 1389
SduI GDGCHC 7 cut(s) 70, 106, 440, 763, 894, 1277, 1366
SexAI ACCWGGT 1 cut(s) 186
SfaNI GCATC 4 cut(s) 59, 158, 278, 1426
SfuI TTCGAA 2 cut(s) 370, 952
SinI GGWCC 2 cut(s) 385, 1286
SmiMI CAYNNNNRTG 2 cut(s) 782, 1107
Sse9I AATT 6 cut(s) 511, 700, 926, 1028, 1141, 1383
SsiI CCGC 6 cut(s) 47, 426, 585, 696, 990, 999
SspI AATATT 1 cut(s) 393
SspMI CTAG 2 cut(s) 972, 1347
StyD4I CCNGG 3 cut(s) 99, 186, 1387
TaaI ACNGT 4 cut(s) 97, 235, 823, 1339
TaiI ACGT 1 cut(s) 987
TaqI TCGA 6 cut(s) 114, 207, 370, 459, 497, 952
TasI AATT 6 cut(s) 511, 700, 926, 1028, 1141, 1383
TatI WGTACW 1 cut(s) 550
TauI GCSGC 3 cut(s) 50, 698, 1001
TfiI GAWTC 2 cut(s) 1121, 1151
Tru1I TTAA 3 cut(s) 510, 717, 1371
Tru9I TTAA 3 cut(s) 510, 717, 1371
TscAI CASTG 3 cut(s) 240, 828, 1275
TseFI GTSAC 3 cut(s) 985, 1349, 1401
Tsp45I GTSAC 3 cut(s) 985, 1349, 1401
TspDTI ATGAA 5 cut(s) 76, 243, 800, 822, 914
TspRI CASTG 3 cut(s) 240, 828, 1275
Van91I CCANNNNNTGG 1 cut(s) 446
VneI GTGCAC 2 cut(s) 890, 1362
VpaK11BI GGWCC 2 cut(s) 385, 1286
XapI RAATTY 1 cut(s) 700
XceI RCATGY 2 cut(s) 269, 594
XcmI CCANNNNNNNNNTGG 1 cut(s) 675
XmiI GTMKAC 2 cut(s) 207, 459
XmnI GAANNNNTTC 2 cut(s) 948, 1120
XspI CTAG 2 cut(s) 972, 1347
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.