protein desumoylation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNase_PH | PF01138 | 89 - 219 | 3.5e-24 | 3' exoribonuclease family, domain 1 |
| RNase_PH_C | PF03725 | 224 - 285 | 4.5e-14 | 3' exoribonuclease family, domain 2 |
| RNase_PH | PF01138 | 448 - 581 | 1.4e-28 | 3' exoribonuclease family, domain 1 |
| KH_1 | PF00013 | 688 - 744 | 6.2e-06 | KH domain |
| S1 | PF00575 | 761 - 823 | 2e-11 | S1 RNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1289 |
| Acc36I | ACCTGC | 1 cut(s) | 425 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2258 |
| AccBSI | CCGCTC | 1 cut(s) | 1929 |
| AccI | GTMKAC | 1 cut(s) | 1245 |
| AccII | CGCG | 1 cut(s) | 112 |
| AccIII | TCCGGA | 1 cut(s) | 2634 |
| AciI | CCGC | 9 cut(s) | 110, 204, 215, 218, 1327, 1817, 1929, 1997, 2464 |
| AclWI | GGATC | 2 cut(s) | 1849, 2483 |
| AcoI | YGGCCR | 2 cut(s) | 1978, 2329 |
| AcsI | RAATTY | 3 cut(s) | 704, 1280, 1796 |
| AcuI | CTGAAG | 2 cut(s) | 1866, 2010 |
| AcyI | GRCGYC | 2 cut(s) | 201, 1697 |
| AdeI | CACNNNGTG | 1 cut(s) | 1442 |
| AfaI | GTAC | 5 cut(s) | 861, 1122, 1514, 2538, 2575 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 20, 1338, 2027, 2258 |
| AflIII | ACRYGT | 1 cut(s) | 1651 |
| AgsI | TTSAA | 7 cut(s) | 538, 1136, 1264, 1610, 1689, 1873, 2008 |
| AhlI | ACTAGT | 1 cut(s) | 443 |
| AjiI | CACGTC | 1 cut(s) | 1249 |
| AjnI | CCWGG | 3 cut(s) | 150, 2192, 2326 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 116, 148 |
| Alw21I | GWGCWC | 6 cut(s) | 997, 1396, 1561, 1606, 1664, 1754 |
| Alw26I | GTCTC | 3 cut(s) | 275, 292, 2132 |
| AlwI | GGATC | 2 cut(s) | 1849, 2483 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 626, 2492 |
| Ama87I | CYCGRG | 1 cut(s) | 815 |
| Aor13HI | TCCGGA | 1 cut(s) | 2634 |
| AoxI | GGCC | 3 cut(s) | 515, 1978, 2329 |
| ApeKI | GCWGC | 8 cut(s) | 114, 212, 431, 623, 757, 829, 2512, 2697 |
| ApoI | RAATTY | 3 cut(s) | 704, 1280, 1796 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2550, 2582 |
| AseI | ATTAAT | 1 cut(s) | 2673 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 542, 1499, 2035 |
| AspLEI | GCGC | 4 cut(s) | 38, 114, 1290, 1296 |
| AspS9I | GGNCC | 1 cut(s) | 1329 |
| AsuC2I | CCSGG | 1 cut(s) | 944 |
| AsuNHI | GCTAGC | 1 cut(s) | 760 |
| AvaI | CYCGRG | 1 cut(s) | 815 |
| AvaII | GGWCC | 1 cut(s) | 1329 |
| BaeGI | GKGCMC | 1 cut(s) | 1384 |
| BanII | GRGCYC | 2 cut(s) | 997, 1606 |
| BauI | CACGAG | 2 cut(s) | 485, 1404 |
| BbsI | GAAGAC | 1 cut(s) | 744 |
| Bbv12I | GWGCWC | 6 cut(s) | 997, 1396, 1561, 1606, 1664, 1754 |
| BbvI | GCAGC | 8 cut(s) | 126, 199, 418, 635, 744, 816, 2524, 2709 |
| BceAI | ACGGC | 1 cut(s) | 49 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 852, 886 |
| BciT130I | CCWGG | 3 cut(s) | 152, 2194, 2328 |
| BciVI | GTATCC | 2 cut(s) | 1087, 1335 |
| BcnI | CCSGG | 1 cut(s) | 944 |
| BcoDI | GTCTC | 3 cut(s) | 275, 292, 2132 |
| BcuI | ACTAGT | 1 cut(s) | 443 |
| BfaI | CTAG | 7 cut(s) | 15, 444, 761, 1020, 1475, 1563, 1784 |
| BfmI | CTRYAG | 8 cut(s) | 136, 432, 669, 998, 1724, 1755, 2269, 2517 |
| BfoI | RGCGCY | 1 cut(s) | 39 |
| BfuAI | ACCTGC | 1 cut(s) | 425 |
| BfuI | GTATCC | 2 cut(s) | 1087, 1335 |
| BlpI | GCTNAGC | 1 cut(s) | 1717 |
| Bme1390I | CCNGG | 4 cut(s) | 152, 944, 2194, 2328 |
| Bme18I | GGWCC | 1 cut(s) | 1329 |
| BmeT110I | CYCGRG | 1 cut(s) | 815 |
| BmgBI | CACGTC | 1 cut(s) | 1249 |
| BmgT120I | GGNCC | 1 cut(s) | 1329 |
| BmiI | GGNNCC | 4 cut(s) | 156, 654, 1331, 2250 |
| BmrFI | CCNGG | 4 cut(s) | 152, 944, 2194, 2328 |
| BmtI | GCTAGC | 1 cut(s) | 764 |
| BpiI | GAAGAC | 1 cut(s) | 744 |
| BpmI | CTGGAG | 2 cut(s) | 1493, 1755 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2459 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1717 |
| BpuEI | CTTGAG | 1 cut(s) | 1342 |
| BpuMI | CCSGG | 1 cut(s) | 944 |
| BsaAI | YACGTR | 1 cut(s) | 1652 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2487 |
| BsaHI | GRCGYC | 2 cut(s) | 201, 1697 |
| BsaI | GGTCTC | 1 cut(s) | 2132 |
| BsaJI | CCNNGG | 5 cut(s) | 816, 942, 1376, 1791, 2193 |
| BsaWI | WCCGGW | 2 cut(s) | 2141, 2634 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2281, 2298, 2311, 2328, 2397, 2427 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 20, 1338, 2027, 2258 |
| Bse1I | ACTGG | 3 cut(s) | 306, 1510, 1843 |
| Bse3DI | GCAATG | 3 cut(s) | 880, 1684, 1776 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2487 |
| BseAI | TCCGGA | 1 cut(s) | 2634 |
| BseBI | CCWGG | 3 cut(s) | 152, 2194, 2328 |
| BseDI | CCNNGG | 5 cut(s) | 816, 942, 1376, 1791, 2193 |
| BseJI | GATNNNNATC | 1 cut(s) | 2487 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 20, 1338, 2027, 2258 |
| BseMI | GCAATG | 3 cut(s) | 880, 1684, 1776 |
| BseMII | CTCAG | 9 cut(s) | 245, 569, 572, 735, 1230, 1472, 1587, 2070, 2484 |
| BseNI | ACTGG | 3 cut(s) | 306, 1510, 1843 |
| BseSI | GKGCMC | 1 cut(s) | 1384 |
| BseXI | GCAGC | 8 cut(s) | 126, 199, 418, 635, 744, 816, 2524, 2709 |
| BsgI | GTGCAG | 1 cut(s) | 14 |
| Bsh1236I | CGCG | 1 cut(s) | 112 |
| BshFI | GGCC | 3 cut(s) | 517, 1980, 2331 |
| BsiHKAI | GWGCWC | 6 cut(s) | 997, 1396, 1561, 1606, 1664, 1754 |
| BsiHKCI | CYCGRG | 1 cut(s) | 815 |
| BsiSI | CCGG | 5 cut(s) | 207, 944, 1981, 2142, 2635 |
| BslFI | GGGAC | 2 cut(s) | 130, 2352 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 20, 1338, 2027, 2258 |
| BsmAI | GTCTC | 3 cut(s) | 275, 292, 2132 |
| BsmFI | GGGAC | 2 cut(s) | 130, 2352 |
| BsmI | GAATGC | 2 cut(s) | 1593, 2503 |
| BsnI | GGCC | 3 cut(s) | 517, 1980, 2331 |
| Bso31I | GGTCTC | 1 cut(s) | 2132 |
| BsoBI | CYCGRG | 1 cut(s) | 815 |
| Bsp1286I | GDGCHC | 7 cut(s) | 997, 1384, 1396, 1561, 1606, 1664, 1754 |
| Bsp13I | TCCGGA | 1 cut(s) | 2634 |
| Bsp143I | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1717 |
| BspACI | CCGC | 9 cut(s) | 110, 204, 215, 218, 1327, 1817, 1929, 1997, 2464 |
| BspANI | GGCC | 3 cut(s) | 517, 1980, 2331 |
| BspCNI | CTCAG | 9 cut(s) | 244, 570, 571, 736, 1231, 1471, 1588, 2071, 2485 |
| BspEI | TCCGGA | 1 cut(s) | 2634 |
| BspFNI | CGCG | 1 cut(s) | 112 |
| BspLI | GGNNCC | 4 cut(s) | 156, 654, 1331, 2250 |
| BspMAI | CTGCAG | 3 cut(s) | 140, 436, 1002 |
| BspMI | ACCTGC | 1 cut(s) | 425 |
| BspOI | GCTAGC | 1 cut(s) | 764 |
| BspPI | GGATC | 2 cut(s) | 1849, 2483 |
| BspQI | GCTCTTC | 2 cut(s) | 1690, 2687 |
| BspTNI | GGTCTC | 1 cut(s) | 2132 |
| BsrBI | CCGCTC | 1 cut(s) | 1929 |
| BsrDI | GCAATG | 3 cut(s) | 880, 1684, 1776 |
| BsrI | ACTGG | 3 cut(s) | 306, 1510, 1843 |
| BssECI | CCNNGG | 5 cut(s) | 816, 942, 1376, 1791, 2193 |
| BssMI | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| BssNI | GRCGYC | 2 cut(s) | 201, 1697 |
| BssSI | CACGAG | 2 cut(s) | 485, 1404 |
| BssT1I | CCWWGG | 1 cut(s) | 1376 |
| Bst2BI | CACGAG | 2 cut(s) | 485, 1404 |
| Bst2UI | CCWGG | 3 cut(s) | 152, 2194, 2328 |
| Bst4CI | ACNGT | 6 cut(s) | 322, 384, 1120, 1419, 2004, 2257 |
| Bst6I | CTCTTC | 4 cut(s) | 1564, 1690, 2130, 2687 |
| BstACI | GRCGYC | 2 cut(s) | 201, 1697 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1006, 2390 |
| BstBAI | YACGTR | 1 cut(s) | 1652 |
| BstC8I | GCNNGC | 7 cut(s) | 762, 766, 834, 1108, 1292, 1593, 2376 |
| BstFNI | CGCG | 1 cut(s) | 112 |
| BstH2I | RGCGCY | 1 cut(s) | 39 |
| BstHHI | GCGC | 4 cut(s) | 38, 114, 1290, 1296 |
| BstKTI | GATC | 5 cut(s) | 484, 1844, 2410, 2491, 2642 |
| BstMAI | GTCTC | 3 cut(s) | 275, 292, 2132 |
| BstMBI | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| BstNI | CCWGG | 3 cut(s) | 152, 2194, 2328 |
| BstSCI | CCNGG | 4 cut(s) | 150, 942, 2192, 2326 |
| BstSFI | CTRYAG | 8 cut(s) | 136, 432, 669, 998, 1724, 1755, 2269, 2517 |
| BstSLI | GKGCMC | 1 cut(s) | 1384 |
| BstUI | CGCG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 8 cut(s) | 126, 199, 418, 635, 744, 816, 2524, 2709 |
| BstV2I | GAAGAC | 1 cut(s) | 744 |
| BstX2I | RGATCY | 2 cut(s) | 1841, 2488 |
| BstYI | RGATCY | 2 cut(s) | 1841, 2488 |
| BsuI | GTATCC | 2 cut(s) | 1087, 1335 |
| BsuRI | GGCC | 3 cut(s) | 517, 1980, 2331 |
| BtrI | CACGTC | 1 cut(s) | 1249 |
| BtsI | GCAGTG | 2 cut(s) | 25, 1117 |
| BtsIMutI | CAGTG | 4 cut(s) | 25, 313, 1117, 2051 |
| BveI | ACCTGC | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 7 cut(s) | 762, 766, 834, 1108, 1292, 1593, 2376 |
| CaiI | CAGNNNCTG | 2 cut(s) | 626, 2492 |
| CfoI | GCGC | 4 cut(s) | 38, 114, 1290, 1296 |
| Cfr13I | GGNCC | 1 cut(s) | 1329 |
| CseI | GACGC | 3 cut(s) | 209, 512, 1686 |
| Csp6I | GTAC | 5 cut(s) | 860, 1121, 1513, 2537, 2574 |
| CviAII | CATG | 7 cut(s) | 551, 959, 1385, 1530, 1583, 1892, 2411 |
| CviQI | GTAC | 5 cut(s) | 860, 1121, 1513, 2537, 2574 |
| DpnI | GATC | 5 cut(s) | 483, 1843, 2409, 2490, 2641 |
| DpnII | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| DraI | TTTAAA | 1 cut(s) | 460 |
| DraIII | CACNNNGTG | 1 cut(s) | 1442 |
| EaeI | YGGCCR | 2 cut(s) | 1978, 2329 |
| Eam1104I | CTCTTC | 4 cut(s) | 1564, 1690, 2130, 2687 |
| EarI | CTCTTC | 4 cut(s) | 1564, 1690, 2130, 2687 |
| EciI | GGCGGA | 1 cut(s) | 1342 |
| Ecl136II | GAGCTC | 2 cut(s) | 995, 1604 |
| Eco130I | CCWWGG | 1 cut(s) | 1376 |
| Eco147I | AGGCCT | 1 cut(s) | 517 |
| Eco24I | GRGCYC | 2 cut(s) | 997, 1606 |
| Eco31I | GGTCTC | 1 cut(s) | 2132 |
| Eco32I | GATATC | 1 cut(s) | 2266 |
| Eco47I | GGWCC | 1 cut(s) | 1329 |
| Eco53kI | GAGCTC | 2 cut(s) | 995, 1604 |
| Eco57I | CTGAAG | 2 cut(s) | 1866, 2010 |
| Eco88I | CYCGRG | 1 cut(s) | 815 |
| EcoICRI | GAGCTC | 2 cut(s) | 995, 1604 |
| EcoRII | CCWGG | 3 cut(s) | 150, 2192, 2326 |
| EcoRV | GATATC | 1 cut(s) | 2266 |
| EcoT14I | CCWWGG | 1 cut(s) | 1376 |
| EcoT22I | ATGCAT | 1 cut(s) | 1855 |
| EcoT38I | GRGCYC | 2 cut(s) | 997, 1606 |
| ErhI | CCWWGG | 1 cut(s) | 1376 |
| FaeI | CATG | 7 cut(s) | 554, 962, 1388, 1533, 1586, 1895, 2414 |
| FaqI | GGGAC | 2 cut(s) | 130, 2352 |
| FatI | CATG | 7 cut(s) | 550, 958, 1384, 1529, 1582, 1891, 2410 |
| FauI | CCCGC | 2 cut(s) | 117, 1922 |
| FauNDI | CATATG | 1 cut(s) | 2302 |
| FblI | GTMKAC | 1 cut(s) | 1245 |
| FriOI | GRGCYC | 2 cut(s) | 997, 1606 |
| FspBI | CTAG | 7 cut(s) | 15, 444, 761, 1020, 1475, 1563, 1784 |
| FspI | TGCGCA | 1 cut(s) | 1289 |
| GlaI | GCGC | 4 cut(s) | 37, 113, 1289, 1295 |
| GsuI | CTGGAG | 2 cut(s) | 1493, 1755 |
| HaeII | RGCGCY | 1 cut(s) | 39 |
| HaeIII | GGCC | 3 cut(s) | 517, 1980, 2331 |
| HapII | CCGG | 5 cut(s) | 207, 944, 1981, 2142, 2635 |
| HgaI | GACGC | 3 cut(s) | 209, 512, 1686 |
| HhaI | GCGC | 4 cut(s) | 38, 114, 1290, 1296 |
| Hin1I | GRCGYC | 2 cut(s) | 201, 1697 |
| Hin1II | CATG | 7 cut(s) | 554, 962, 1388, 1533, 1586, 1895, 2414 |
| Hin6I | GCGC | 4 cut(s) | 36, 112, 1288, 1294 |
| HinP1I | GCGC | 4 cut(s) | 36, 112, 1288, 1294 |
| HinfI | GANTC | 9 cut(s) | 166, 605, 715, 740, 1015, 1222, 1500, 2056, 2525 |
| HpaII | CCGG | 5 cut(s) | 207, 944, 1981, 2142, 2635 |
| Hpy166II | GTNNAC | 6 cut(s) | 346, 380, 1246, 1367, 1515, 2089 |
| Hpy8I | GTNNAC | 6 cut(s) | 346, 380, 1246, 1367, 1515, 2089 |
| Hpy99I | CGWCG | 1 cut(s) | 203 |
| HpyCH4III | ACNGT | 6 cut(s) | 322, 384, 1120, 1419, 2004, 2257 |
| HpyCH4IV | ACGT | 3 cut(s) | 1248, 1345, 1651 |
| HpySE526I | ACGT | 3 cut(s) | 1248, 1345, 1651 |
| Hsp92I | GRCGYC | 2 cut(s) | 201, 1697 |
| Hsp92II | CATG | 7 cut(s) | 554, 962, 1388, 1533, 1586, 1895, 2414 |
| HspAI | GCGC | 4 cut(s) | 36, 112, 1288, 1294 |
| Kpn2I | TCCGGA | 1 cut(s) | 2634 |
| Kzo9I | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| LguI | GCTCTTC | 2 cut(s) | 1690, 2687 |
| LmnI | GCTCC | 7 cut(s) | 209, 418, 946, 1556, 2018, 2302, 2619 |
| Lsp1109I | GCAGC | 8 cut(s) | 126, 199, 418, 635, 744, 816, 2524, 2709 |
| MaeI | CTAG | 7 cut(s) | 15, 444, 761, 1020, 1475, 1563, 1784 |
| MaeII | ACGT | 3 cut(s) | 1248, 1345, 1651 |
| MalI | GATC | 5 cut(s) | 483, 1843, 2409, 2490, 2641 |
| MbiI | CCGCTC | 1 cut(s) | 1929 |
| MboI | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| MfeI | CAATTG | 1 cut(s) | 2154 |
| MflI | RGATCY | 2 cut(s) | 1841, 2488 |
| MhlI | GDGCHC | 7 cut(s) | 997, 1384, 1396, 1561, 1606, 1664, 1754 |
| MlyI | GAGTC | 3 cut(s) | 734, 1216, 2519 |
| MmeI | TCCRAC | 8 cut(s) | 411, 419, 551, 729, 743, 1525, 1741, 2276 |
| Mph1103I | ATGCAT | 1 cut(s) | 1855 |
| MroI | TCCGGA | 1 cut(s) | 2634 |
| MroXI | GAANNNNTTC | 3 cut(s) | 542, 1499, 2035 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1389, 2352, 2415 |
| MspA1I | CMGCKG | 1 cut(s) | 626 |
| MspI | CCGG | 5 cut(s) | 207, 944, 1981, 2142, 2635 |
| MspR9I | CCNGG | 4 cut(s) | 152, 944, 2194, 2328 |
| MunI | CAATTG | 1 cut(s) | 2154 |
| Mva1269I | GAATGC | 2 cut(s) | 1593, 2503 |
| MvaI | CCWGG | 3 cut(s) | 152, 2194, 2328 |
| MvnI | CGCG | 1 cut(s) | 112 |
| NciI | CCSGG | 1 cut(s) | 944 |
| NdeI | CATATG | 1 cut(s) | 2302 |
| NdeII | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| NheI | GCTAGC | 1 cut(s) | 760 |
| NlaIII | CATG | 7 cut(s) | 554, 962, 1388, 1533, 1586, 1895, 2414 |
| NlaIV | GGNNCC | 4 cut(s) | 156, 654, 1331, 2250 |
| NmeAIII | GCCGAG | 2 cut(s) | 2357, 2492 |
| NmuCI | GTSAC | 4 cut(s) | 322, 616, 698, 2522 |
| NsbI | TGCGCA | 1 cut(s) | 1289 |
| NsiI | ATGCAT | 1 cut(s) | 1855 |
| PceI | AGGCCT | 1 cut(s) | 517 |
| PciSI | GCTCTTC | 2 cut(s) | 1690, 2687 |
| PctI | GAATGC | 2 cut(s) | 1593, 2503 |
| PdmI | GAANNNNTTC | 3 cut(s) | 542, 1499, 2035 |
| PfeI | GAWTC | 6 cut(s) | 166, 605, 715, 1015, 1500, 2056 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2258 |
| PleI | GAGTC | 3 cut(s) | 734, 1216, 2519 |
| PpsI | GAGTC | 3 cut(s) | 734, 1216, 2519 |
| Ppu21I | YACGTR | 1 cut(s) | 1652 |
| PshBI | ATTAAT | 1 cut(s) | 2673 |
| Psp124BI | GAGCTC | 2 cut(s) | 997, 1606 |
| Psp6I | CCWGG | 3 cut(s) | 150, 2192, 2326 |
| PspGI | CCWGG | 3 cut(s) | 150, 2192, 2326 |
| PspN4I | GGNNCC | 4 cut(s) | 156, 654, 1331, 2250 |
| PspPI | GGNCC | 1 cut(s) | 1329 |
| PstI | CTGCAG | 3 cut(s) | 140, 436, 1002 |
| PstNI | CAGNNNCTG | 2 cut(s) | 626, 2492 |
| PsuI | RGATCY | 2 cut(s) | 1841, 2488 |
| PvuII | CAGCTG | 1 cut(s) | 626 |
| RsaI | GTAC | 5 cut(s) | 861, 1122, 1514, 2538, 2575 |
| RsaNI | GTAC | 5 cut(s) | 860, 1121, 1513, 2537, 2574 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1389, 2352, 2415 |
| SacI | GAGCTC | 2 cut(s) | 997, 1606 |
| SapI | GCTCTTC | 2 cut(s) | 1690, 2687 |
| Sau3AI | GATC | 5 cut(s) | 481, 1841, 2407, 2488, 2639 |
| Sau96I | GGNCC | 1 cut(s) | 1329 |
| SchI | GAGTC | 3 cut(s) | 734, 1216, 2519 |
| ScrFI | CCNGG | 4 cut(s) | 152, 944, 2194, 2328 |
| SduI | GDGCHC | 7 cut(s) | 997, 1384, 1396, 1561, 1606, 1664, 1754 |
| SfcI | CTRYAG | 8 cut(s) | 136, 432, 669, 998, 1724, 1755, 2269, 2517 |
| SinI | GGWCC | 1 cut(s) | 1329 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1389, 2352, 2415 |
| SmlI | CTYRAG | 1 cut(s) | 1357 |
| SmoI | CTYRAG | 1 cut(s) | 1357 |
| SpeI | ACTAGT | 1 cut(s) | 443 |
| SseBI | AGGCCT | 1 cut(s) | 517 |
| SsiI | CCGC | 9 cut(s) | 110, 204, 215, 218, 1327, 1817, 1929, 1997, 2464 |
| SspI | AATATT | 3 cut(s) | 783, 1617, 2671 |
| SspMI | CTAG | 7 cut(s) | 15, 444, 761, 1020, 1475, 1563, 1784 |
| SstI | GAGCTC | 2 cut(s) | 997, 1606 |
| StuI | AGGCCT | 1 cut(s) | 517 |
| StyD4I | CCNGG | 4 cut(s) | 150, 942, 2192, 2326 |
| StyI | CCWWGG | 1 cut(s) | 1376 |
| TaaI | ACNGT | 6 cut(s) | 322, 384, 1120, 1419, 2004, 2257 |
| TaiI | ACGT | 3 cut(s) | 1251, 1348, 1654 |
| TaqI | TCGA | 3 cut(s) | 169, 1220, 2204 |
| TaqII | GACCGA | 1 cut(s) | 212 |
| TatI | WGTACW | 1 cut(s) | 1512 |
| TauI | GCSGC | 3 cut(s) | 206, 218, 2466 |
| TfiI | GAWTC | 6 cut(s) | 166, 605, 715, 1015, 1500, 2056 |
| TscAI | CASTG | 4 cut(s) | 25, 313, 1117, 2058 |
| TseFI | GTSAC | 4 cut(s) | 322, 616, 698, 2522 |
| TseI | GCWGC | 8 cut(s) | 114, 212, 431, 623, 757, 829, 2512, 2697 |
| Tsp45I | GTSAC | 4 cut(s) | 322, 616, 698, 2522 |
| TspGWI | ACGGA | 4 cut(s) | 232, 394, 1228, 1564 |
| TspRI | CASTG | 4 cut(s) | 25, 313, 1117, 2058 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2258 |
| VpaK11BI | GGWCC | 1 cut(s) | 1329 |
| VspI | ATTAAT | 1 cut(s) | 2673 |
| XapI | RAATTY | 3 cut(s) | 704, 1280, 1796 |
| XbaI | TCTAGA | 1 cut(s) | 1783 |
| XmiI | GTMKAC | 1 cut(s) | 1245 |
| XmnI | GAANNNNTTC | 3 cut(s) | 542, 1499, 2035 |
| XspI | CTAG | 7 cut(s) | 15, 444, 761, 1020, 1475, 1563, 1784 |
| Zsp2I | ATGCAT | 1 cut(s) | 1855 |