SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 776 |
| AccB1I | GGYRCC | 1 cut(s) | 154 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2213 |
| AccI | GTMKAC | 1 cut(s) | 1182 |
| AccII | CGCG | 2 cut(s) | 65, 90 |
| AciI | CCGC | 9 cut(s) | 99, 375, 398, 873, 891, 1224, 1494, 2433, 2501 |
| AclI | AACGTT | 1 cut(s) | 1229 |
| AclWI | GGATC | 3 cut(s) | 415, 536, 2388 |
| AcsI | RAATTY | 7 cut(s) | 41, 226, 344, 380, 978, 1614, 1880 |
| AcuI | CTGAAG | 1 cut(s) | 2124 |
| AcvI | CACGTG | 1 cut(s) | 108 |
| AfaI | GTAC | 8 cut(s) | 440, 972, 1100, 1532, 1579, 1695, 2218, 2252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2213 |
| AflII | CTTAAG | 1 cut(s) | 1598 |
| AflIII | ACRYGT | 4 cut(s) | 63, 88, 107, 2307 |
| AgeI | ACCGGT | 1 cut(s) | 2174 |
| AjnI | CCWGG | 3 cut(s) | 150, 393, 693 |
| Alw21I | GWGCWC | 1 cut(s) | 691 |
| Alw26I | GTCTC | 6 cut(s) | 54, 261, 500, 588, 1931, 1942 |
| AlwI | GGATC | 3 cut(s) | 415, 536, 2388 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 189 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 4 cut(s) | 764, 807, 940, 1866 |
| ApeKI | GCWGC | 6 cut(s) | 566, 569, 673, 1156, 1539, 2348 |
| ApoI | RAATTY | 7 cut(s) | 41, 226, 344, 380, 978, 1614, 1880 |
| AsiGI | ACCGGT | 1 cut(s) | 2174 |
| AspA2I | CCTAGG | 1 cut(s) | 2510 |
| AspLEI | GCGC | 2 cut(s) | 35, 2423 |
| AspS9I | GGNCC | 3 cut(s) | 807, 924, 1677 |
| AsuC2I | CCSGG | 3 cut(s) | 261, 262, 2133 |
| AsuHPI | GGTGA | 6 cut(s) | 320, 545, 1718, 1946, 2028, 2117 |
| AsuII | TTCGAA | 1 cut(s) | 224 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| AvaII | GGWCC | 2 cut(s) | 924, 1677 |
| AvrII | CCTAGG | 1 cut(s) | 2510 |
| BaeGI | GKGCMC | 1 cut(s) | 159 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 888, 921 |
| BanI | GGYRCC | 1 cut(s) | 154 |
| BanII | GRGCYC | 1 cut(s) | 1096 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2112, 2144 |
| BbrPI | CACGTG | 1 cut(s) | 108 |
| BbsI | GAAGAC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 1 cut(s) | 691 |
| BbvI | GCAGC | 6 cut(s) | 553, 556, 685, 1168, 1526, 2360 |
| BccI | CCATC | 5 cut(s) | 289, 793, 932, 1628, 2402 |
| BciT130I | CCWGG | 3 cut(s) | 152, 395, 695 |
| BciVI | GTATCC | 4 cut(s) | 141, 603, 916, 1182 |
| BclI | TGATCA | 1 cut(s) | 2359 |
| BcnI | CCSGG | 3 cut(s) | 261, 262, 2133 |
| BcoDI | GTCTC | 6 cut(s) | 54, 261, 500, 588, 1931, 1942 |
| BfaI | CTAG | 6 cut(s) | 267, 360, 615, 1487, 2390, 2511 |
| BfmI | CTRYAG | 1 cut(s) | 190 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfrI | CTTAAG | 1 cut(s) | 1598 |
| BfuI | GTATCC | 4 cut(s) | 141, 603, 916, 1182 |
| BisI | GCNGC | 8 cut(s) | 375, 567, 570, 674, 1157, 1540, 2349, 2434 |
| BlnI | CCTAGG | 1 cut(s) | 2510 |
| BlsI | GCNGC | 8 cut(s) | 376, 568, 571, 675, 1158, 1541, 2350, 2435 |
| BmcAI | AGTACT | 2 cut(s) | 1579, 1695 |
| Bme1390I | CCNGG | 6 cut(s) | 152, 261, 262, 395, 695, 2133 |
| Bme18I | GGWCC | 2 cut(s) | 924, 1677 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 3 cut(s) | 807, 924, 1677 |
| BmiI | GGNNCC | 3 cut(s) | 156, 925, 1678 |
| BmrFI | CCNGG | 6 cut(s) | 152, 261, 262, 395, 695, 2133 |
| BmrI | ACTGGG | 1 cut(s) | 31 |
| BmsI | GCATC | 3 cut(s) | 752, 1007, 2271 |
| BmuI | ACTGGG | 1 cut(s) | 31 |
| BpiI | GAAGAC | 1 cut(s) | 474 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1105, 1137 |
| BpmI | CTGGAG | 1 cut(s) | 2190 |
| Bpu14I | TTCGAA | 1 cut(s) | 224 |
| BpuEI | CTTGAG | 1 cut(s) | 1035 |
| BpuMI | CCSGG | 3 cut(s) | 261, 262, 2133 |
| Bsa29I | ATCGAT | 1 cut(s) | 1210 |
| BsaAI | YACGTR | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2471 |
| BsaI | GGTCTC | 2 cut(s) | 588, 1942 |
| BsaJI | CCNNGG | 5 cut(s) | 260, 304, 918, 1849, 2510 |
| BsaWI | WCCGGW | 1 cut(s) | 2174 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 941, 971 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2213 |
| Bse118I | RCCGGY | 1 cut(s) | 2174 |
| Bse1I | ACTGG | 1 cut(s) | 26 |
| Bse3DI | GCAATG | 3 cut(s) | 369, 1983, 2074 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2471 |
| BseBI | CCWGG | 3 cut(s) | 152, 395, 695 |
| BseCI | ATCGAT | 1 cut(s) | 1210 |
| BseDI | CCNNGG | 5 cut(s) | 260, 304, 918, 1849, 2510 |
| BseGI | GGATG | 3 cut(s) | 465, 834, 2262 |
| BseJI | GATNNNNATC | 1 cut(s) | 2471 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2213 |
| BseMI | GCAATG | 3 cut(s) | 369, 1983, 2074 |
| BseMII | CTCAG | 7 cut(s) | 95, 480, 1103, 1109, 1317, 1398, 1937 |
| BseNI | ACTGG | 1 cut(s) | 26 |
| BseRI | GAGGAG | 1 cut(s) | 2193 |
| BseSI | GKGCMC | 1 cut(s) | 159 |
| BseXI | GCAGC | 6 cut(s) | 553, 556, 685, 1168, 1526, 2360 |
| BseYI | CCCAGC | 1 cut(s) | 1918 |
| Bsh1236I | CGCG | 2 cut(s) | 65, 90 |
| BshFI | GGCC | 4 cut(s) | 766, 809, 942, 1868 |
| BshNI | GGYRCC | 1 cut(s) | 154 |
| BshTI | ACCGGT | 1 cut(s) | 2174 |
| BshVI | ATCGAT | 1 cut(s) | 1210 |
| BsiHKAI | GWGCWC | 1 cut(s) | 691 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BsiSI | CCGG | 3 cut(s) | 261, 2133, 2175 |
| BslFI | GGGAC | 7 cut(s) | 272, 277, 892, 937, 1117, 2235, 2426 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2213 |
| BsmAI | GTCTC | 6 cut(s) | 54, 261, 500, 588, 1931, 1942 |
| BsmBI | CGTCTC | 1 cut(s) | 54 |
| BsmFI | GGGAC | 7 cut(s) | 272, 277, 892, 937, 1117, 2235, 2426 |
| BsmI | GAATGC | 2 cut(s) | 1360, 1430 |
| BsnI | GGCC | 4 cut(s) | 766, 809, 942, 1868 |
| Bso31I | GGTCTC | 2 cut(s) | 588, 1942 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp119I | TTCGAA | 1 cut(s) | 224 |
| Bsp1286I | GDGCHC | 3 cut(s) | 159, 691, 1096 |
| Bsp1407I | TGTACA | 1 cut(s) | 2250 |
| Bsp143I | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| BspACI | CCGC | 9 cut(s) | 99, 375, 398, 873, 891, 1224, 1494, 2433, 2501 |
| BspANI | GGCC | 4 cut(s) | 766, 809, 942, 1868 |
| BspCNI | CTCAG | 7 cut(s) | 94, 481, 1104, 1108, 1318, 1399, 1936 |
| BspDI | ATCGAT | 1 cut(s) | 1210 |
| BspFNI | CGCG | 2 cut(s) | 65, 90 |
| BspHI | TCATGA | 1 cut(s) | 502 |
| BspLI | GGNNCC | 3 cut(s) | 156, 925, 1678 |
| BspPI | GGATC | 3 cut(s) | 415, 536, 2388 |
| BspT104I | TTCGAA | 1 cut(s) | 224 |
| BspT107I | GGYRCC | 1 cut(s) | 154 |
| BspTI | CTTAAG | 1 cut(s) | 1598 |
| BspTNI | GGTCTC | 2 cut(s) | 588, 1942 |
| BsrDI | GCAATG | 3 cut(s) | 369, 1983, 2074 |
| BsrFI | RCCGGY | 1 cut(s) | 2174 |
| BsrGI | TGTACA | 1 cut(s) | 2250 |
| BsrI | ACTGG | 1 cut(s) | 26 |
| BssAI | RCCGGY | 1 cut(s) | 2174 |
| BssECI | CCNNGG | 5 cut(s) | 260, 304, 918, 1849, 2510 |
| BssMI | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| BssNAI | GTATAC | 1 cut(s) | 1183 |
| BssT1I | CCWWGG | 3 cut(s) | 304, 918, 2510 |
| Bst1107I | GTATAC | 1 cut(s) | 1183 |
| Bst2UI | CCWGG | 3 cut(s) | 152, 395, 695 |
| Bst6I | CTCTTC | 4 cut(s) | 130, 152, 237, 1648 |
| BstAFI | CTTAAG | 1 cut(s) | 1598 |
| BstAUI | TGTACA | 1 cut(s) | 2250 |
| BstBAI | YACGTR | 1 cut(s) | 108 |
| BstBI | TTCGAA | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 3 cut(s) | 687, 1496, 2494 |
| BstDSI | CCRYGG | 1 cut(s) | 1849 |
| BstF5I | GGATG | 3 cut(s) | 465, 834, 2262 |
| BstFNI | CGCG | 2 cut(s) | 65, 90 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 2 cut(s) | 35, 2423 |
| BstKTI | GATC | 6 cut(s) | 145, 336, 423, 544, 2362, 2383 |
| BstMAI | GTCTC | 6 cut(s) | 54, 261, 500, 588, 1931, 1942 |
| BstMBI | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 566, 682, 695, 1100, 2498, 2515 |
| BstNI | CCWGG | 3 cut(s) | 152, 395, 695 |
| BstNSI | RCATGY | 3 cut(s) | 1254, 1833, 2311 |
| BstSCI | CCNGG | 6 cut(s) | 150, 259, 260, 393, 693, 2131 |
| BstSFI | CTRYAG | 1 cut(s) | 190 |
| BstSLI | GKGCMC | 1 cut(s) | 159 |
| BstUI | CGCG | 2 cut(s) | 65, 90 |
| BstV1I | GCAGC | 6 cut(s) | 553, 556, 685, 1168, 1526, 2360 |
| BstV2I | GAAGAC | 1 cut(s) | 474 |
| BstX2I | RGATCY | 3 cut(s) | 420, 541, 2380 |
| BstYI | RGATCY | 3 cut(s) | 420, 541, 2380 |
| BstZ17I | GTATAC | 1 cut(s) | 1183 |
| Bsu15I | ATCGAT | 1 cut(s) | 1210 |
| BsuI | GTATCC | 4 cut(s) | 141, 603, 916, 1182 |
| BsuRI | GGCC | 4 cut(s) | 766, 809, 942, 1868 |
| BsuTUI | ATCGAT | 1 cut(s) | 1210 |
| BtgI | CCRYGG | 1 cut(s) | 1849 |
| BtsCI | GGATG | 3 cut(s) | 465, 834, 2262 |
| BtsI | GCAGTG | 1 cut(s) | 1767 |
| BtsIMutI | CAGTG | 5 cut(s) | 336, 809, 1296, 1767, 2047 |
| Cac8I | GCNNGC | 3 cut(s) | 687, 1496, 2494 |
| CaiI | CAGNNNCTG | 1 cut(s) | 189 |
| CciI | TCATGA | 1 cut(s) | 502 |
| CfoI | GCGC | 2 cut(s) | 35, 2423 |
| Cfr10I | RCCGGY | 1 cut(s) | 2174 |
| Cfr13I | GGNCC | 3 cut(s) | 807, 924, 1677 |
| Cfr9I | CCCGGG | 1 cut(s) | 260 |
| ClaI | ATCGAT | 1 cut(s) | 1210 |
| CseI | GACGC | 2 cut(s) | 71, 79 |
| Csp6I | GTAC | 8 cut(s) | 439, 971, 1099, 1531, 1578, 1694, 2217, 2251 |
| CspAI | ACCGGT | 1 cut(s) | 2174 |
| CviQI | GTAC | 8 cut(s) | 439, 971, 1099, 1531, 1578, 1694, 2217, 2251 |
| DpnI | GATC | 6 cut(s) | 144, 335, 422, 543, 2361, 2382 |
| DpnII | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| DraI | TTTAAA | 2 cut(s) | 1815, 2455 |
| Eam1104I | CTCTTC | 4 cut(s) | 130, 152, 237, 1648 |
| EarI | CTCTTC | 4 cut(s) | 130, 152, 237, 1648 |
| EciI | GGCGGA | 1 cut(s) | 1239 |
| Eco130I | CCWWGG | 3 cut(s) | 304, 918, 2510 |
| Eco24I | GRGCYC | 1 cut(s) | 1096 |
| Eco31I | GGTCTC | 2 cut(s) | 588, 1942 |
| Eco47I | GGWCC | 2 cut(s) | 924, 1677 |
| Eco57I | CTGAAG | 1 cut(s) | 2124 |
| Eco72I | CACGTG | 1 cut(s) | 108 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoRI | GAATTC | 2 cut(s) | 41, 226 |
| EcoRII | CCWGG | 3 cut(s) | 150, 393, 693 |
| EcoT14I | CCWWGG | 3 cut(s) | 304, 918, 2510 |
| EcoT38I | GRGCYC | 1 cut(s) | 1096 |
| ErhI | CCWWGG | 3 cut(s) | 304, 918, 2510 |
| Esp3I | CGTCTC | 1 cut(s) | 54 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 288, 320, 1680, 1712 |
| FaqI | GGGAC | 7 cut(s) | 272, 277, 892, 937, 1117, 2235, 2426 |
| FauI | CCCGC | 2 cut(s) | 884, 1487 |
| FbaI | TGATCA | 1 cut(s) | 2359 |
| FblI | GTMKAC | 1 cut(s) | 1182 |
| Fnu4HI | GCNGC | 8 cut(s) | 375, 567, 570, 674, 1157, 1540, 2349, 2434 |
| FokI | GGATG | 3 cut(s) | 472, 821, 2249 |
| FriOI | GRGCYC | 1 cut(s) | 1096 |
| Fsp4HI | GCNGC | 8 cut(s) | 375, 567, 570, 674, 1157, 1540, 2349, 2434 |
| FspBI | CTAG | 6 cut(s) | 267, 360, 615, 1487, 2390, 2511 |
| GlaI | GCGC | 2 cut(s) | 34, 2422 |
| GluI | GCNGC | 8 cut(s) | 375, 567, 570, 674, 1157, 1540, 2349, 2434 |
| GsaI | CCCAGC | 1 cut(s) | 1922 |
| GsuI | CTGGAG | 1 cut(s) | 2190 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 4 cut(s) | 766, 809, 942, 1868 |
| HapII | CCGG | 3 cut(s) | 261, 2133, 2175 |
| HgaI | GACGC | 2 cut(s) | 71, 79 |
| HhaI | GCGC | 2 cut(s) | 35, 2423 |
| Hin6I | GCGC | 2 cut(s) | 33, 2421 |
| HinP1I | GCGC | 2 cut(s) | 33, 2421 |
| HincII | GTYRAC | 2 cut(s) | 94, 520 |
| HindII | GTYRAC | 2 cut(s) | 94, 520 |
| HindIII | AAGCTT | 2 cut(s) | 1388, 2461 |
| HpaI | GTTAAC | 1 cut(s) | 520 |
| HpaII | CCGG | 3 cut(s) | 261, 2133, 2175 |
| HphI | GGTGA | 6 cut(s) | 320, 545, 1718, 1946, 2028, 2117 |
| Hpy188I | TCNGA | 8 cut(s) | 237, 847, 984, 1003, 1327, 1588, 2143, 2556 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 20 |
| HpyCH4IV | ACGT | 3 cut(s) | 107, 313, 1229 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 566, 682, 695, 1100, 2498, 2515 |
| HpySE526I | ACGT | 3 cut(s) | 107, 313, 1229 |
| HspAI | GCGC | 2 cut(s) | 33, 2421 |
| Ksp22I | TGATCA | 1 cut(s) | 2359 |
| KspAI | GTTAAC | 1 cut(s) | 520 |
| Kzo9I | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| LmnI | GCTCC | 4 cut(s) | 322, 1896, 2318, 2515 |
| Lsp1109I | GCAGC | 6 cut(s) | 553, 556, 685, 1168, 1526, 2360 |
| LweI | GCATC | 3 cut(s) | 752, 1007, 2271 |
| MaeI | CTAG | 6 cut(s) | 267, 360, 615, 1487, 2390, 2511 |
| MaeII | ACGT | 3 cut(s) | 107, 313, 1229 |
| MaeIII | GTNAC | 5 cut(s) | 755, 1029, 1253, 2051, 2105 |
| MalI | GATC | 6 cut(s) | 144, 335, 422, 543, 2361, 2382 |
| MboI | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| MfeI | CAATTG | 3 cut(s) | 900, 1140, 1716 |
| MflI | RGATCY | 3 cut(s) | 420, 541, 2380 |
| MhlI | GDGCHC | 3 cut(s) | 159, 691, 1096 |
| MluI | ACGCGT | 2 cut(s) | 63, 88 |
| MlyI | GAGTC | 3 cut(s) | 41, 859, 1037 |
| MslI | CAYNNNNRTG | 3 cut(s) | 360, 936, 1200 |
| MspA1I | CMGCKG | 1 cut(s) | 1494 |
| MspCI | CTTAAG | 1 cut(s) | 1598 |
| MspI | CCGG | 3 cut(s) | 261, 2133, 2175 |
| MspR9I | CCNGG | 6 cut(s) | 152, 261, 262, 395, 695, 2133 |
| MunI | CAATTG | 3 cut(s) | 900, 1140, 1716 |
| Mva1269I | GAATGC | 2 cut(s) | 1360, 1430 |
| MvaI | CCWGG | 3 cut(s) | 152, 395, 695 |
| MvnI | CGCG | 2 cut(s) | 65, 90 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 566, 682, 695, 1100, 2498, 2515 |
| NciI | CCSGG | 3 cut(s) | 261, 262, 2133 |
| NdeII | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| NlaIV | GGNNCC | 3 cut(s) | 156, 925, 1678 |
| NmuCI | GTSAC | 4 cut(s) | 755, 1029, 2051, 2105 |
| NspI | RCATGY | 3 cut(s) | 1254, 1833, 2311 |
| NspV | TTCGAA | 1 cut(s) | 224 |
| PagI | TCATGA | 1 cut(s) | 502 |
| PciI | ACATGT | 1 cut(s) | 2307 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 134 |
| PctI | GAATGC | 2 cut(s) | 1360, 1430 |
| PfeI | GAWTC | 7 cut(s) | 626, 817, 985, 1297, 1638, 2033, 2124 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2213 |
| PfoI | TCCNGGA | 1 cut(s) | 2131 |
| PinAI | ACCGGT | 1 cut(s) | 2174 |
| PkrI | GCNGC | 8 cut(s) | 376, 568, 571, 675, 1158, 1541, 2350, 2435 |
| PleI | GAGTC | 3 cut(s) | 41, 859, 1036 |
| PmaCI | CACGTG | 1 cut(s) | 108 |
| PmlI | CACGTG | 1 cut(s) | 108 |
| PpsI | GAGTC | 3 cut(s) | 41, 859, 1036 |
| Ppu21I | YACGTR | 1 cut(s) | 108 |
| PscI | ACATGT | 1 cut(s) | 2307 |
| PsiI | TTATAA | 1 cut(s) | 776 |
| Psp1406I | AACGTT | 1 cut(s) | 1229 |
| Psp6I | CCWGG | 3 cut(s) | 150, 393, 693 |
| PspCI | CACGTG | 1 cut(s) | 108 |
| PspFI | CCCAGC | 1 cut(s) | 1918 |
| PspGI | CCWGG | 3 cut(s) | 150, 393, 693 |
| PspN4I | GGNNCC | 3 cut(s) | 156, 925, 1678 |
| PspPI | GGNCC | 3 cut(s) | 807, 924, 1677 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 396, 428 |
| PstNI | CAGNNNCTG | 1 cut(s) | 189 |
| PsuI | RGATCY | 3 cut(s) | 420, 541, 2380 |
| RsaI | GTAC | 8 cut(s) | 440, 972, 1100, 1532, 1579, 1695, 2218, 2252 |
| RsaNI | GTAC | 8 cut(s) | 439, 971, 1099, 1531, 1578, 1694, 2217, 2251 |
| RseI | CAYNNNNRTG | 3 cut(s) | 360, 936, 1200 |
| SatI | GCNGC | 8 cut(s) | 375, 567, 570, 674, 1157, 1540, 2349, 2434 |
| Sau3AI | GATC | 6 cut(s) | 142, 333, 420, 541, 2359, 2380 |
| Sau96I | GGNCC | 3 cut(s) | 807, 924, 1677 |
| ScaI | AGTACT | 2 cut(s) | 1579, 1695 |
| SchI | GAGTC | 3 cut(s) | 41, 859, 1037 |
| ScrFI | CCNGG | 6 cut(s) | 152, 261, 262, 395, 695, 2133 |
| SduI | GDGCHC | 3 cut(s) | 159, 691, 1096 |
| SfaNI | GCATC | 3 cut(s) | 752, 1007, 2271 |
| SfcI | CTRYAG | 1 cut(s) | 190 |
| SfuI | TTCGAA | 1 cut(s) | 224 |
| SinI | GGWCC | 2 cut(s) | 924, 1677 |
| SmaI | CCCGGG | 1 cut(s) | 262 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 360, 936, 1200 |
| SmlI | CTYRAG | 2 cut(s) | 1050, 1598 |
| SmoI | CTYRAG | 2 cut(s) | 1050, 1598 |
| SsiI | CCGC | 9 cut(s) | 99, 375, 398, 873, 891, 1224, 1494, 2433, 2501 |
| SspI | AATATT | 3 cut(s) | 1107, 1795, 2280 |
| SspMI | CTAG | 6 cut(s) | 267, 360, 615, 1487, 2390, 2511 |
| StyD4I | CCNGG | 6 cut(s) | 150, 259, 260, 393, 693, 2131 |
| StyI | CCWWGG | 3 cut(s) | 304, 918, 2510 |
| TaiI | ACGT | 3 cut(s) | 110, 316, 1232 |
| TaqI | TCGA | 5 cut(s) | 45, 224, 592, 1210, 2572 |
| TaqII | GACCGA | 1 cut(s) | 2311 |
| TatI | WGTACW | 3 cut(s) | 1577, 1693, 2250 |
| TauI | GCSGC | 2 cut(s) | 377, 2436 |
| TfiI | GAWTC | 7 cut(s) | 626, 817, 985, 1297, 1638, 2033, 2124 |
| TscAI | CASTG | 5 cut(s) | 343, 809, 1296, 1774, 2054 |
| TseFI | GTSAC | 4 cut(s) | 755, 1029, 2051, 2105 |
| TseI | GCWGC | 6 cut(s) | 566, 569, 673, 1156, 1539, 2348 |
| Tsp45I | GTSAC | 4 cut(s) | 755, 1029, 2051, 2105 |
| TspGWI | ACGGA | 1 cut(s) | 1669 |
| TspMI | CCCGGG | 1 cut(s) | 260 |
| TspRI | CASTG | 5 cut(s) | 343, 809, 1296, 1774, 2054 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2213 |
| Vha464I | CTTAAG | 1 cut(s) | 1598 |
| VpaK11BI | GGWCC | 2 cut(s) | 924, 1677 |
| XapI | RAATTY | 7 cut(s) | 41, 226, 344, 380, 978, 1614, 1880 |
| XceI | RCATGY | 3 cut(s) | 1254, 1833, 2311 |
| XmaI | CCCGGG | 1 cut(s) | 260 |
| XmaJI | CCTAGG | 1 cut(s) | 2510 |
| XmiI | GTMKAC | 1 cut(s) | 1182 |
| XspI | CTAG | 6 cut(s) | 267, 360, 615, 1487, 2390, 2511 |
| ZrmI | AGTACT | 2 cut(s) | 1579, 1695 |