Peptidylprolyl isomerase domain and WD repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WD40_Prp19 | PF24814 | 56 - 144 | 5.4e-06 | Prp19 WD40 domain |
| Beta-prop_WDR5 | PF25175 | 57 - 208 | 2.8e-06 | WDR5 beta-propeller domain |
| Pro_isomerase | PF00160 | 400 - 528 | 9e-49 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
| LRR_14 | PF23598 | 522 - 664 | 1e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 772 - 876 | 7.9e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 860 - 994 | 2.8e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 941 - 1000 | 2.7e-09 | Leucine rich repeat |
| Pkinase | PF00069 | 1107 - 1332 | 5.4e-37 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 1109 - 1334 | 8e-38 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3494 |
| Acc36I | ACCTGC | 1 cut(s) | 2395 |
| Acc65I | GGTACC | 1 cut(s) | 1898 |
| AccB1I | GGYRCC | 1 cut(s) | 1898 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2055, 3596, 3884 |
| AccBSI | CCGCTC | 1 cut(s) | 143 |
| AccI | GTMKAC | 1 cut(s) | 453 |
| AccII | CGCG | 3 cut(s) | 35, 203, 2600 |
| AciI | CCGC | 8 cut(s) | 35, 38, 141, 201, 203, 2187, 3066, 3075 |
| AclI | AACGTT | 1 cut(s) | 3741 |
| AclWI | GGATC | 5 cut(s) | 359, 1010, 1349, 1492, 3865 |
| AcoI | YGGCCR | 4 cut(s) | 408, 877, 1609, 1620 |
| AcuI | CTGAAG | 5 cut(s) | 89, 1110, 2459, 3135, 3327 |
| AflII | CTTAAG | 2 cut(s) | 2009, 2203 |
| AflIII | ACRYGT | 6 cut(s) | 616, 2598, 2778, 3408, 3769, 4033 |
| AhlI | ACTAGT | 1 cut(s) | 2323 |
| AjnI | CCWGG | 3 cut(s) | 67, 433, 476 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1688, 1720 |
| AleI | CACNNNNGTG | 1 cut(s) | 1505 |
| Alw21I | GWGCWC | 4 cut(s) | 88, 1994, 3207, 3254 |
| Alw26I | GTCTC | 5 cut(s) | 1215, 1660, 2218, 2236, 2810 |
| AlwI | GGATC | 5 cut(s) | 359, 1010, 1349, 1492, 3865 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 776 |
| Ama87I | CYCGRG | 1 cut(s) | 81 |
| ApeKI | GCWGC | 6 cut(s) | 974, 977, 980, 1151, 2568, 3872 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2192, 2224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1728 |
| Asp718I | GGTACC | 1 cut(s) | 1898 |
| AspA2I | CCTAGG | 1 cut(s) | 1843 |
| AspLEI | GCGC | 1 cut(s) | 99 |
| AsuC2I | CCSGG | 1 cut(s) | 173 |
| AsuII | TTCGAA | 1 cut(s) | 2091 |
| AvaI | CYCGRG | 1 cut(s) | 81 |
| AvaII | GGWCC | 2 cut(s) | 294, 305 |
| AvrII | CCTAGG | 1 cut(s) | 1843 |
| BaeGI | GKGCMC | 1 cut(s) | 2127 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 692, 725 |
| BalI | TGGCCA | 1 cut(s) | 410 |
| BanI | GGYRCC | 1 cut(s) | 1898 |
| BanII | GRGCYC | 2 cut(s) | 88, 2865 |
| Bbv12I | GWGCWC | 4 cut(s) | 88, 1994, 3207, 3254 |
| BbvCI | CCTCAGC | 1 cut(s) | 783 |
| BbvI | GCAGC | 6 cut(s) | 964, 986, 992, 1138, 2580, 3859 |
| BceAI | ACGGC | 2 cut(s) | 1596, 4006 |
| BciT130I | CCWGG | 3 cut(s) | 69, 435, 478 |
| BciVI | GTATCC | 2 cut(s) | 606, 1251 |
| BclI | TGATCA | 1 cut(s) | 1554 |
| BcnI | CCSGG | 1 cut(s) | 173 |
| BcoDI | GTCTC | 5 cut(s) | 1215, 1660, 2218, 2236, 2810 |
| BcuI | ACTAGT | 1 cut(s) | 2323 |
| BfaI | CTAG | 9 cut(s) | 320, 716, 887, 1844, 2081, 2324, 2753, 3542, 4252 |
| BfmI | CTRYAG | 3 cut(s) | 972, 978, 4118 |
| BfoI | RGCGCY | 1 cut(s) | 100 |
| BfrI | CTTAAG | 2 cut(s) | 2009, 2203 |
| BfuAI | ACCTGC | 1 cut(s) | 2395 |
| BfuI | GTATCC | 2 cut(s) | 606, 1251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 576 |
| BglII | AGATCT | 1 cut(s) | 682 |
| BisI | GCNGC | 8 cut(s) | 36, 204, 975, 978, 981, 1152, 2569, 3873 |
| BlnI | CCTAGG | 1 cut(s) | 1843 |
| BlsI | GCNGC | 8 cut(s) | 37, 205, 976, 979, 982, 1153, 2570, 3874 |
| BmcAI | AGTACT | 1 cut(s) | 1797 |
| Bme1390I | CCNGG | 4 cut(s) | 69, 173, 435, 478 |
| Bme18I | GGWCC | 2 cut(s) | 294, 305 |
| BmeT110I | CYCGRG | 1 cut(s) | 81 |
| BmiI | GGNNCC | 8 cut(s) | 12, 54, 296, 307, 1778, 1900, 2047, 2719 |
| BmrFI | CCNGG | 4 cut(s) | 69, 173, 435, 478 |
| BmrI | ACTGGG | 2 cut(s) | 1830, 2052 |
| BmsI | GCATC | 7 cut(s) | 514, 1084, 1163, 2364, 3595, 3607, 4080 |
| BmuI | ACTGGG | 2 cut(s) | 1830, 2052 |
| BoxI | GACNNNNGTC | 1 cut(s) | 732 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2605, 2637, 3955, 3987 |
| BpmI | CTGGAG | 3 cut(s) | 1116, 3618, 3861 |
| Bpu10I | CCTNAGC | 1 cut(s) | 783 |
| Bpu14I | TTCGAA | 1 cut(s) | 2091 |
| BpuEI | CTTGAG | 3 cut(s) | 689, 2008, 2908 |
| BpuMI | CCSGG | 1 cut(s) | 173 |
| Bsa29I | ATCGAT | 1 cut(s) | 4083 |
| BsaAI | YACGTR | 1 cut(s) | 617 |
| BsaJI | CCNNGG | 9 cut(s) | 68, 201, 301, 934, 1101, 1517, 1770, 1843, 2054 |
| BsaWI | WCCGGW | 1 cut(s) | 3956 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 113, 143, 1891, 1921, 3069, 3099 |
| Bse3DI | GCAATG | 2 cut(s) | 1974, 2279 |
| BseBI | CCWGG | 3 cut(s) | 69, 435, 478 |
| BseCI | ATCGAT | 1 cut(s) | 4083 |
| BseDI | CCNNGG | 9 cut(s) | 68, 201, 301, 934, 1101, 1517, 1770, 1843, 2054 |
| BseMI | GCAATG | 2 cut(s) | 1974, 2279 |
| BseMII | CTCAG | 6 cut(s) | 29, 797, 1502, 2229, 2763, 3449 |
| BseRI | GAGGAG | 6 cut(s) | 20, 23, 62, 65, 2660, 4055 |
| BseSI | GKGCMC | 1 cut(s) | 2127 |
| BseXI | GCAGC | 6 cut(s) | 964, 986, 992, 1138, 2580, 3859 |
| BseYI | CCCAGC | 1 cut(s) | 2649 |
| BsgI | GTGCAG | 2 cut(s) | 2750, 3750 |
| Bsh1236I | CGCG | 3 cut(s) | 35, 203, 2600 |
| Bsh1285I | CGRYCG | 3 cut(s) | 33, 736, 3864 |
| BshNI | GGYRCC | 1 cut(s) | 1898 |
| BshVI | ATCGAT | 1 cut(s) | 4083 |
| BsiEI | CGRYCG | 3 cut(s) | 33, 736, 3864 |
| BsiHKAI | GWGCWC | 4 cut(s) | 88, 1994, 3207, 3254 |
| BsiHKCI | CYCGRG | 1 cut(s) | 81 |
| BsiSI | CCGG | 4 cut(s) | 172, 880, 1619, 3957 |
| BslFI | GGGAC | 4 cut(s) | 280, 291, 2290, 3275 |
| BsmAI | GTCTC | 5 cut(s) | 1215, 1660, 2218, 2236, 2810 |
| BsmBI | CGTCTC | 1 cut(s) | 2236 |
| BsmFI | GGGAC | 4 cut(s) | 280, 291, 2290, 3275 |
| BsmI | GAATGC | 7 cut(s) | 796, 1256, 2233, 2499, 2571, 3040, 3933 |
| BsoBI | CYCGRG | 1 cut(s) | 81 |
| Bsp119I | TTCGAA | 1 cut(s) | 2091 |
| Bsp1286I | GDGCHC | 6 cut(s) | 88, 1994, 2127, 2865, 3207, 3254 |
| Bsp1407I | TGTACA | 4 cut(s) | 350, 511, 3357, 3921 |
| BspACI | CCGC | 8 cut(s) | 35, 38, 141, 201, 203, 2187, 3066, 3075 |
| BspCNI | CTCAG | 6 cut(s) | 28, 796, 1501, 2228, 2764, 3450 |
| BspDI | ATCGAT | 1 cut(s) | 4083 |
| BspFNI | CGCG | 3 cut(s) | 35, 203, 2600 |
| BspHI | TCATGA | 1 cut(s) | 1338 |
| BspLI | GGNNCC | 8 cut(s) | 12, 54, 296, 307, 1778, 1900, 2047, 2719 |
| BspMAI | CTGCAG | 2 cut(s) | 976, 982 |
| BspMI | ACCTGC | 1 cut(s) | 2395 |
| BspPI | GGATC | 5 cut(s) | 359, 1010, 1349, 1492, 3865 |
| BspQI | GCTCTTC | 1 cut(s) | 1077 |
| BspT104I | TTCGAA | 1 cut(s) | 2091 |
| BspT107I | GGYRCC | 1 cut(s) | 1898 |
| BspTI | CTTAAG | 2 cut(s) | 2009, 2203 |
| BsrBI | CCGCTC | 1 cut(s) | 143 |
| BsrDI | GCAATG | 2 cut(s) | 1974, 2279 |
| BsrGI | TGTACA | 4 cut(s) | 350, 511, 3357, 3921 |
| BssECI | CCNNGG | 9 cut(s) | 68, 201, 301, 934, 1101, 1517, 1770, 1843, 2054 |
| BssT1I | CCWWGG | 7 cut(s) | 301, 934, 1101, 1517, 1770, 1843, 2054 |
| Bst2UI | CCWGG | 3 cut(s) | 69, 435, 478 |
| Bst6I | CTCTTC | 5 cut(s) | 108, 1077, 1102, 1543, 4125 |
| BstAFI | CTTAAG | 2 cut(s) | 2009, 2203 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4172 |
| BstAUI | TGTACA | 4 cut(s) | 350, 511, 3357, 3921 |
| BstBAI | YACGTR | 1 cut(s) | 617 |
| BstBI | TTCGAA | 1 cut(s) | 2091 |
| BstC8I | GCNNGC | 6 cut(s) | 75, 117, 483, 1468, 2550, 4093 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstFNI | CGCG | 3 cut(s) | 35, 203, 2600 |
| BstH2I | RGCGCY | 1 cut(s) | 100 |
| BstHHI | GCGC | 1 cut(s) | 99 |
| BstMAI | GTCTC | 5 cut(s) | 1215, 1660, 2218, 2236, 2810 |
| BstMCI | CGRYCG | 3 cut(s) | 33, 736, 3864 |
| BstNI | CCWGG | 3 cut(s) | 69, 435, 478 |
| BstNSI | RCATGY | 6 cut(s) | 2782, 3412, 3504, 3773, 4037, 4170 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 732 |
| BstSCI | CCNGG | 4 cut(s) | 67, 171, 433, 476 |
| BstSFI | CTRYAG | 3 cut(s) | 972, 978, 4118 |
| BstSLI | GKGCMC | 1 cut(s) | 2127 |
| BstUI | CGCG | 3 cut(s) | 35, 203, 2600 |
| BstV1I | GCAGC | 6 cut(s) | 964, 986, 992, 1138, 2580, 3859 |
| BstX2I | RGATCY | 4 cut(s) | 682, 1015, 1354, 1484 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2348, 2714 |
| BstYI | RGATCY | 4 cut(s) | 682, 1015, 1354, 1484 |
| Bsu15I | ATCGAT | 1 cut(s) | 4083 |
| BsuI | GTATCC | 2 cut(s) | 606, 1251 |
| BsuTUI | ATCGAT | 1 cut(s) | 4083 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtgZI | GCGATG | 1 cut(s) | 4090 |
| BtsI | GCAGTG | 1 cut(s) | 1992 |
| BtsIMutI | CAGTG | 8 cut(s) | 219, 496, 1282, 1512, 1992, 2174, 3455, 3718 |
| BveI | ACCTGC | 1 cut(s) | 2395 |
| Cac8I | GCNNGC | 6 cut(s) | 75, 117, 483, 1468, 2550, 4093 |
| CaiI | CAGNNNCTG | 1 cut(s) | 776 |
| CciI | TCATGA | 1 cut(s) | 1338 |
| CfoI | GCGC | 1 cut(s) | 99 |
| Cfr42I | CCGCGG | 1 cut(s) | 204 |
| ClaI | ATCGAT | 1 cut(s) | 4083 |
| DraI | TTTAAA | 1 cut(s) | 1590 |
| EaeI | YGGCCR | 4 cut(s) | 408, 877, 1609, 1620 |
| Eam1104I | CTCTTC | 5 cut(s) | 108, 1077, 1102, 1543, 4125 |
| EarI | CTCTTC | 5 cut(s) | 108, 1077, 1102, 1543, 4125 |
| EciI | GGCGGA | 1 cut(s) | 53 |
| Ecl136II | GAGCTC | 1 cut(s) | 86 |
| Eco130I | CCWWGG | 7 cut(s) | 301, 934, 1101, 1517, 1770, 1843, 2054 |
| Eco147I | AGGCCT | 3 cut(s) | 318, 1441, 2895 |
| Eco24I | GRGCYC | 2 cut(s) | 88, 2865 |
| Eco32I | GATATC | 2 cut(s) | 2064, 3655 |
| Eco47I | GGWCC | 2 cut(s) | 294, 305 |
| Eco53kI | GAGCTC | 1 cut(s) | 86 |
| Eco57I | CTGAAG | 5 cut(s) | 89, 1110, 2459, 3135, 3327 |
| Eco88I | CYCGRG | 1 cut(s) | 81 |
| EcoICRI | GAGCTC | 1 cut(s) | 86 |
| EcoO109I | RGGNCCY | 1 cut(s) | 294 |
| EcoRI | GAATTC | 2 cut(s) | 3366, 3551 |
| EcoRII | CCWGG | 3 cut(s) | 67, 433, 476 |
| EcoRV | GATATC | 2 cut(s) | 2064, 3655 |
| EcoT14I | CCWWGG | 7 cut(s) | 301, 934, 1101, 1517, 1770, 1843, 2054 |
| EcoT22I | ATGCAT | 1 cut(s) | 1209 |
| EcoT38I | GRGCYC | 2 cut(s) | 88, 2865 |
| ErhI | CCWWGG | 7 cut(s) | 301, 934, 1101, 1517, 1770, 1843, 2054 |
| Esp3I | CGTCTC | 1 cut(s) | 2236 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 465, 497, 1583, 1615 |
| FaqI | GGGAC | 4 cut(s) | 280, 291, 2290, 3275 |
| FauNDI | CATATG | 1 cut(s) | 3910 |
| FbaI | TGATCA | 1 cut(s) | 1554 |
| FblI | GTMKAC | 1 cut(s) | 453 |
| Fnu4HI | GCNGC | 8 cut(s) | 36, 204, 975, 978, 981, 1152, 2569, 3873 |
| FriOI | GRGCYC | 2 cut(s) | 88, 2865 |
| Fsp4HI | GCNGC | 8 cut(s) | 36, 204, 975, 978, 981, 1152, 2569, 3873 |
| FspBI | CTAG | 9 cut(s) | 320, 716, 887, 1844, 2081, 2324, 2753, 3542, 4252 |
| GlaI | GCGC | 1 cut(s) | 98 |
| GluI | GCNGC | 8 cut(s) | 36, 204, 975, 978, 981, 1152, 2569, 3873 |
| GsaI | CCCAGC | 1 cut(s) | 2653 |
| GsuI | CTGGAG | 3 cut(s) | 1116, 3618, 3861 |
| HaeII | RGCGCY | 1 cut(s) | 100 |
| HapII | CCGG | 4 cut(s) | 172, 880, 1619, 3957 |
| HhaI | GCGC | 1 cut(s) | 99 |
| Hin6I | GCGC | 1 cut(s) | 97 |
| HinP1I | GCGC | 1 cut(s) | 97 |
| HincII | GTYRAC | 4 cut(s) | 394, 1863, 2250, 3906 |
| HindII | GTYRAC | 4 cut(s) | 394, 1863, 2250, 3906 |
| HindIII | AAGCTT | 4 cut(s) | 1715, 2138, 2206, 2447 |
| HpaI | GTTAAC | 1 cut(s) | 1863 |
| HpaII | CCGG | 4 cut(s) | 172, 880, 1619, 3957 |
| Hpy99I | CGWCG | 1 cut(s) | 651 |
| HpyCH4IV | ACGT | 7 cut(s) | 596, 616, 699, 2766, 3741, 3980, 4142 |
| HpySE526I | ACGT | 7 cut(s) | 596, 616, 699, 2766, 3741, 3980, 4142 |
| HspAI | GCGC | 1 cut(s) | 97 |
| KpnI | GGTACC | 1 cut(s) | 1902 |
| Ksp22I | TGATCA | 1 cut(s) | 1554 |
| KspAI | GTTAAC | 1 cut(s) | 1863 |
| KspI | CCGCGG | 1 cut(s) | 204 |
| LguI | GCTCTTC | 1 cut(s) | 1077 |
| LmnI | GCTCC | 8 cut(s) | 10, 52, 1971, 3297, 3422, 3567, 3845, 3880 |
| Lsp1109I | GCAGC | 6 cut(s) | 964, 986, 992, 1138, 2580, 3859 |
| LweI | GCATC | 7 cut(s) | 514, 1084, 1163, 2364, 3595, 3607, 4080 |
| MaeI | CTAG | 9 cut(s) | 320, 716, 887, 1844, 2081, 2324, 2753, 3542, 4252 |
| MaeII | ACGT | 7 cut(s) | 596, 616, 699, 2766, 3741, 3980, 4142 |
| MbiI | CCGCTC | 1 cut(s) | 143 |
| MfeI | CAATTG | 2 cut(s) | 1633, 1850 |
| MflI | RGATCY | 4 cut(s) | 682, 1015, 1354, 1484 |
| MhlI | GDGCHC | 6 cut(s) | 88, 1994, 2127, 2865, 3207, 3254 |
| MlsI | TGGCCA | 1 cut(s) | 410 |
| MluI | ACGCGT | 1 cut(s) | 2598 |
| MluNI | TGGCCA | 1 cut(s) | 410 |
| MlyI | GAGTC | 5 cut(s) | 122, 1332, 2623, 3257, 3643 |
| MmeI | TCCRAC | 7 cut(s) | 854, 1268, 2077, 2586, 3037, 3614, 3801 |
| Mox20I | TGGCCA | 1 cut(s) | 410 |
| Mph1103I | ATGCAT | 1 cut(s) | 1209 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1728 |
| MscI | TGGCCA | 1 cut(s) | 410 |
| MslI | CAYNNNNRTG | 3 cut(s) | 174, 1229, 1505 |
| Msp20I | TGGCCA | 1 cut(s) | 410 |
| MspA1I | CMGCKG | 3 cut(s) | 203, 977, 1136 |
| MspCI | CTTAAG | 2 cut(s) | 2009, 2203 |
| MspI | CCGG | 4 cut(s) | 172, 880, 1619, 3957 |
| MspR9I | CCNGG | 4 cut(s) | 69, 173, 435, 478 |
| MunI | CAATTG | 2 cut(s) | 1633, 1850 |
| Mva1269I | GAATGC | 7 cut(s) | 796, 1256, 2233, 2499, 2571, 3040, 3933 |
| MvaI | CCWGG | 3 cut(s) | 69, 435, 478 |
| MvnI | CGCG | 3 cut(s) | 35, 203, 2600 |
| NciI | CCSGG | 1 cut(s) | 173 |
| NdeI | CATATG | 1 cut(s) | 3910 |
| NlaIV | GGNNCC | 8 cut(s) | 12, 54, 296, 307, 1778, 1900, 2047, 2719 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NmuCI | GTSAC | 4 cut(s) | 597, 695, 938, 3986 |
| NsiI | ATGCAT | 1 cut(s) | 1209 |
| NspI | RCATGY | 6 cut(s) | 2782, 3412, 3504, 3773, 4037, 4170 |
| NspV | TTCGAA | 1 cut(s) | 2091 |
| OliI | CACNNNNGTG | 1 cut(s) | 1505 |
| PaeR7I | CTCGAG | 1 cut(s) | 81 |
| PagI | TCATGA | 1 cut(s) | 1338 |
| PceI | AGGCCT | 3 cut(s) | 318, 1441, 2895 |
| PciI | ACATGT | 4 cut(s) | 2778, 3408, 3769, 4033 |
| PciSI | GCTCTTC | 1 cut(s) | 1077 |
| PctI | GAATGC | 7 cut(s) | 796, 1256, 2233, 2499, 2571, 3040, 3933 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1728 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2055, 3596, 3884 |
| PkrI | GCNGC | 8 cut(s) | 37, 205, 976, 979, 982, 1153, 2570, 3874 |
| Ple19I | CGATCG | 1 cut(s) | 33 |
| PleI | GAGTC | 5 cut(s) | 122, 1331, 2622, 3257, 3642 |
| PpsI | GAGTC | 5 cut(s) | 122, 1331, 2622, 3257, 3642 |
| Ppu21I | YACGTR | 1 cut(s) | 617 |
| PpuMI | RGGWCCY | 1 cut(s) | 294 |
| PscI | ACATGT | 4 cut(s) | 2778, 3408, 3769, 4033 |
| PshAI | GACNNNNGTC | 1 cut(s) | 732 |
| PsiI | TTATAA | 1 cut(s) | 3494 |
| Psp124BI | GAGCTC | 1 cut(s) | 88 |
| Psp1406I | AACGTT | 1 cut(s) | 3741 |
| Psp5II | RGGWCCY | 1 cut(s) | 294 |
| Psp6I | CCWGG | 3 cut(s) | 67, 433, 476 |
| PspFI | CCCAGC | 1 cut(s) | 2649 |
| PspGI | CCWGG | 3 cut(s) | 67, 433, 476 |
| PspN4I | GGNNCC | 8 cut(s) | 12, 54, 296, 307, 1778, 1900, 2047, 2719 |
| PspPPI | RGGWCCY | 1 cut(s) | 294 |
| PspXI | VCTCGAGB | 1 cut(s) | 81 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1716, 1748, 2462, 2494 |
| PstI | CTGCAG | 2 cut(s) | 976, 982 |
| PstNI | CAGNNNCTG | 1 cut(s) | 776 |
| PsuI | RGATCY | 4 cut(s) | 682, 1015, 1354, 1484 |
| PvuI | CGATCG | 1 cut(s) | 33 |
| PvuII | CAGCTG | 2 cut(s) | 977, 1136 |
| RseI | CAYNNNNRTG | 3 cut(s) | 174, 1229, 1505 |
| SacI | GAGCTC | 1 cut(s) | 88 |
| SacII | CCGCGG | 1 cut(s) | 204 |
| SapI | GCTCTTC | 1 cut(s) | 1077 |
| SatI | GCNGC | 8 cut(s) | 36, 204, 975, 978, 981, 1152, 2569, 3873 |
| ScaI | AGTACT | 1 cut(s) | 1797 |
| SchI | GAGTC | 5 cut(s) | 122, 1332, 2623, 3257, 3643 |
| ScrFI | CCNGG | 4 cut(s) | 69, 173, 435, 478 |
| SduI | GDGCHC | 6 cut(s) | 88, 1994, 2127, 2865, 3207, 3254 |
| SfaNI | GCATC | 7 cut(s) | 514, 1084, 1163, 2364, 3595, 3607, 4080 |
| SfcI | CTRYAG | 3 cut(s) | 972, 978, 4118 |
| Sfr274I | CTCGAG | 1 cut(s) | 81 |
| Sfr303I | CCGCGG | 1 cut(s) | 204 |
| SfuI | TTCGAA | 1 cut(s) | 2091 |
| SgrBI | CCGCGG | 1 cut(s) | 204 |
| SinI | GGWCC | 2 cut(s) | 294, 305 |
| SlaI | CTCGAG | 1 cut(s) | 81 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 174, 1229, 1505 |
| SmlI | CTYRAG | 6 cut(s) | 81, 668, 1987, 2009, 2203, 2887 |
| SmoI | CTYRAG | 6 cut(s) | 81, 668, 1987, 2009, 2203, 2887 |
| SpeI | ACTAGT | 1 cut(s) | 2323 |
| SseBI | AGGCCT | 3 cut(s) | 318, 1441, 2895 |
| SsiI | CCGC | 8 cut(s) | 35, 38, 141, 201, 203, 2187, 3066, 3075 |
| SspMI | CTAG | 9 cut(s) | 320, 716, 887, 1844, 2081, 2324, 2753, 3542, 4252 |
| SstI | GAGCTC | 1 cut(s) | 88 |
| StuI | AGGCCT | 3 cut(s) | 318, 1441, 2895 |
| StyD4I | CCNGG | 4 cut(s) | 67, 171, 433, 476 |
| StyI | CCWWGG | 7 cut(s) | 301, 934, 1101, 1517, 1770, 1843, 2054 |
| TaiI | ACGT | 7 cut(s) | 599, 619, 702, 2769, 3744, 3983, 4145 |
| TaqII | GACCGA | 3 cut(s) | 722, 2525, 3850 |
| TatI | WGTACW | 6 cut(s) | 350, 511, 1795, 2758, 3357, 3921 |
| TauI | GCSGC | 2 cut(s) | 38, 206 |
| TscAI | CASTG | 8 cut(s) | 226, 496, 1289, 1512, 1999, 2174, 3462, 3725 |
| TseFI | GTSAC | 4 cut(s) | 597, 695, 938, 3986 |
| TseI | GCWGC | 6 cut(s) | 974, 977, 980, 1151, 2568, 3872 |
| Tsp45I | GTSAC | 4 cut(s) | 597, 695, 938, 3986 |
| TspGWI | ACGGA | 1 cut(s) | 4064 |
| TspRI | CASTG | 8 cut(s) | 226, 496, 1289, 1512, 1999, 2174, 3462, 3725 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2055, 3596, 3884 |
| Vha464I | CTTAAG | 2 cut(s) | 2009, 2203 |
| VpaK11BI | GGWCC | 2 cut(s) | 294, 305 |
| XceI | RCATGY | 6 cut(s) | 2782, 3412, 3504, 3773, 4037, 4170 |
| XhoI | CTCGAG | 1 cut(s) | 81 |
| XmaJI | CCTAGG | 1 cut(s) | 1843 |
| XmiI | GTMKAC | 1 cut(s) | 453 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1728 |
| XspI | CTAG | 9 cut(s) | 320, 716, 887, 1844, 2081, 2324, 2753, 3542, 4252 |
| ZrmI | AGTACT | 1 cut(s) | 1797 |
| Zsp2I | ATGCAT | 1 cut(s) | 1209 |