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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 398 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 408 |
| AclWI | GGATC | 2 cut(s) | 106, 442 |
| AcsI | RAATTY | 3 cut(s) | 39, 212, 465 |
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AcyI | GRCGYC | 1 cut(s) | 399 |
| AfaI | GTAC | 2 cut(s) | 306, 431 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 125, 408 |
| AflIII | ACRYGT | 1 cut(s) | 381 |
| AgeI | ACCGGT | 1 cut(s) | 471 |
| AgsI | TTSAA | 3 cut(s) | 208, 365, 450 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 350, 382 |
| AluBI | AGCT | 2 cut(s) | 70, 497 |
| AluI | AGCT | 2 cut(s) | 70, 497 |
| Alw26I | GTCTC | 1 cut(s) | 144 |
| AlwI | GGATC | 2 cut(s) | 106, 442 |
| ApoI | RAATTY | 3 cut(s) | 39, 212, 465 |
| AseI | ATTAAT | 1 cut(s) | 81 |
| AsiGI | ACCGGT | 1 cut(s) | 471 |
| AspLEI | GCGC | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 2 cut(s) | 461, 491 |
| AsuII | TTCGAA | 1 cut(s) | 73 |
| BanI | GGYRCC | 1 cut(s) | 398 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| BccI | CCATC | 1 cut(s) | 410 |
| BclI | TGATCA | 1 cut(s) | 342 |
| BcoDI | GTCTC | 1 cut(s) | 144 |
| BfaI | CTAG | 2 cut(s) | 29, 189 |
| BfoI | RGCGCY | 1 cut(s) | 402 |
| BmcAI | AGTACT | 1 cut(s) | 306 |
| BmiI | GGNNCC | 2 cut(s) | 131, 400 |
| BmsI | GCATC | 2 cut(s) | 192, 261 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| BpmI | CTGGAG | 1 cut(s) | 126 |
| Bpu14I | TTCGAA | 1 cut(s) | 73 |
| BpuEI | CTTGAG | 2 cut(s) | 128, 303 |
| BsaHI | GRCGYC | 1 cut(s) | 399 |
| BsaJI | CCNNGG | 1 cut(s) | 407 |
| BsaWI | WCCGGW | 1 cut(s) | 471 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 125, 408 |
| Bse118I | RCCGGY | 1 cut(s) | 471 |
| Bse1I | ACTGG | 3 cut(s) | 109, 202, 400 |
| BseDI | CCNNGG | 1 cut(s) | 407 |
| BseGI | GGATG | 3 cut(s) | 183, 255, 402 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 125, 408 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseNI | ACTGG | 3 cut(s) | 109, 202, 400 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BshNI | GGYRCC | 1 cut(s) | 398 |
| BshTI | ACCGGT | 1 cut(s) | 471 |
| BsiSI | CCGG | 1 cut(s) | 472 |
| BsiWI | CGTACG | 1 cut(s) | 429 |
| BslFI | GGGAC | 1 cut(s) | 42 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 125, 408 |
| BsmAI | GTCTC | 1 cut(s) | 144 |
| BsmBI | CGTCTC | 1 cut(s) | 144 |
| BsmFI | GGGAC | 1 cut(s) | 42 |
| Bsp119I | TTCGAA | 1 cut(s) | 73 |
| Bsp143I | GATC | 3 cut(s) | 111, 342, 434 |
| BspCNI | CTCAG | 1 cut(s) | 347 |
| BspLI | GGNNCC | 2 cut(s) | 131, 400 |
| BspPI | GGATC | 2 cut(s) | 106, 442 |
| BspQI | GCTCTTC | 1 cut(s) | 11 |
| BspT104I | TTCGAA | 1 cut(s) | 73 |
| BspT107I | GGYRCC | 1 cut(s) | 398 |
| BsrFI | RCCGGY | 1 cut(s) | 471 |
| BsrI | ACTGG | 3 cut(s) | 109, 202, 400 |
| BssAI | RCCGGY | 1 cut(s) | 471 |
| BssECI | CCNNGG | 1 cut(s) | 407 |
| BssMI | GATC | 3 cut(s) | 111, 342, 434 |
| BssNI | GRCGYC | 1 cut(s) | 399 |
| BssT1I | CCWWGG | 1 cut(s) | 407 |
| Bst4CI | ACNGT | 1 cut(s) | 220 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstACI | GRCGYC | 1 cut(s) | 399 |
| BstBI | TTCGAA | 1 cut(s) | 73 |
| BstDEI | CTNAG | 2 cut(s) | 172, 334 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 123 |
| BstF5I | GGATG | 3 cut(s) | 183, 255, 402 |
| BstH2I | RGCGCY | 1 cut(s) | 402 |
| BstHHI | GCGC | 1 cut(s) | 401 |
| BstKTI | GATC | 3 cut(s) | 114, 345, 437 |
| BstMAI | GTCTC | 1 cut(s) | 144 |
| BstMBI | GATC | 3 cut(s) | 111, 342, 434 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 161, 273 |
| BstNSI | RCATGY | 2 cut(s) | 271, 385 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BstX2I | RGATCY | 2 cut(s) | 111, 434 |
| BstYI | RGATCY | 2 cut(s) | 111, 434 |
| BtsCI | GGATG | 3 cut(s) | 183, 255, 402 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| CfoI | GCGC | 1 cut(s) | 401 |
| Cfr10I | RCCGGY | 1 cut(s) | 471 |
| Csp6I | GTAC | 2 cut(s) | 305, 430 |
| CspAI | ACCGGT | 1 cut(s) | 471 |
| CviAII | CATG | 2 cut(s) | 268, 382 |
| CviJI | RGCY | 4 cut(s) | 70, 234, 276, 497 |
| CviKI_1 | RGCY | 4 cut(s) | 70, 234, 276, 497 |
| CviQI | GTAC | 2 cut(s) | 305, 430 |
| DdeI | CTNAG | 2 cut(s) | 172, 334 |
| DinI | GGCGCC | 1 cut(s) | 400 |
| DpnI | GATC | 3 cut(s) | 113, 344, 436 |
| DpnII | GATC | 3 cut(s) | 111, 342, 434 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco130I | CCWWGG | 1 cut(s) | 407 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 123 |
| EcoT14I | CCWWGG | 1 cut(s) | 407 |
| EgeI | GGCGCC | 1 cut(s) | 400 |
| EheI | GGCGCC | 1 cut(s) | 400 |
| ErhI | CCWWGG | 1 cut(s) | 407 |
| Esp3I | CGTCTC | 1 cut(s) | 144 |
| FaeI | CATG | 2 cut(s) | 271, 385 |
| FaiI | YATR | 7 cut(s) | 199, 269, 287, 383, 441, 489, 502 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 312, 344 |
| FaqI | GGGAC | 1 cut(s) | 42 |
| FatI | CATG | 2 cut(s) | 267, 381 |
| FbaI | TGATCA | 1 cut(s) | 342 |
| FokI | GGATG | 3 cut(s) | 170, 242, 389 |
| FspBI | CTAG | 2 cut(s) | 29, 189 |
| GlaI | GCGC | 1 cut(s) | 400 |
| GsuI | CTGGAG | 1 cut(s) | 126 |
| HaeII | RGCGCY | 1 cut(s) | 402 |
| HapII | CCGG | 1 cut(s) | 472 |
| HhaI | GCGC | 1 cut(s) | 401 |
| Hin1I | GRCGYC | 1 cut(s) | 399 |
| Hin1II | CATG | 2 cut(s) | 271, 385 |
| Hin6I | GCGC | 1 cut(s) | 399 |
| HinP1I | GCGC | 1 cut(s) | 399 |
| HindIII | AAGCTT | 2 cut(s) | 68, 495 |
| HpaII | CCGG | 1 cut(s) | 472 |
| HphI | GGTGA | 2 cut(s) | 461, 491 |
| Hpy166II | GTNNAC | 1 cut(s) | 456 |
| Hpy188I | TCNGA | 1 cut(s) | 337 |
| Hpy188III | TCNNGA | 1 cut(s) | 145 |
| Hpy8I | GTNNAC | 1 cut(s) | 456 |
| HpyAV | CCTTC | 5 cut(s) | 125, 129, 170, 270, 371 |
| HpyCH4III | ACNGT | 1 cut(s) | 220 |
| HpyCH4IV | ACGT | 1 cut(s) | 428 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 267, 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 161, 273 |
| HpyF3I | CTNAG | 2 cut(s) | 172, 334 |
| HpySE526I | ACGT | 1 cut(s) | 428 |
| Hsp92I | GRCGYC | 1 cut(s) | 399 |
| Hsp92II | CATG | 2 cut(s) | 271, 385 |
| HspAI | GCGC | 1 cut(s) | 399 |
| KasI | GGCGCC | 1 cut(s) | 398 |
| Ksp22I | TGATCA | 1 cut(s) | 342 |
| Kzo9I | GATC | 3 cut(s) | 111, 342, 434 |
| LguI | GCTCTTC | 1 cut(s) | 11 |
| LpnPI | CCDG | 9 cut(s) | 90, 215, 216, 234, 267, 277, 381, 462, 485 |
| LweI | GCATC | 2 cut(s) | 192, 261 |
| MaeI | CTAG | 2 cut(s) | 29, 189 |
| MaeII | ACGT | 1 cut(s) | 428 |
| MaeIII | GTNAC | 2 cut(s) | 289, 479 |
| MalI | GATC | 3 cut(s) | 113, 344, 436 |
| MboI | GATC | 3 cut(s) | 111, 342, 434 |
| MboII | GAAGA | 2 cut(s) | 219, 320 |
| MflI | RGATCY | 2 cut(s) | 111, 434 |
| MluCI | AATT | 9 cut(s) | 39, 50, 82, 89, 97, 212, 365, 389, 465 |
| Mly113I | GGCGCC | 1 cut(s) | 399 |
| MnlI | CCTC | 5 cut(s) | 54, 57, 287, 292, 343 |
| MseI | TTAA | 5 cut(s) | 81, 93, 101, 236, 378 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspI | CCGG | 1 cut(s) | 472 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 161, 273 |
| NarI | GGCGCC | 1 cut(s) | 399 |
| NdeII | GATC | 3 cut(s) | 111, 342, 434 |
| NlaIII | CATG | 2 cut(s) | 271, 385 |
| NlaIV | GGNNCC | 2 cut(s) | 131, 400 |
| NmuCI | GTSAC | 1 cut(s) | 479 |
| NspI | RCATGY | 2 cut(s) | 271, 385 |
| NspV | TTCGAA | 1 cut(s) | 73 |
| PciI | ACATGT | 1 cut(s) | 381 |
| PciSI | GCTCTTC | 1 cut(s) | 11 |
| Pfl23II | CGTACG | 1 cut(s) | 429 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 408 |
| PinAI | ACCGGT | 1 cut(s) | 471 |
| PluTI | GGCGCC | 1 cut(s) | 402 |
| PscI | ACATGT | 1 cut(s) | 381 |
| PshBI | ATTAAT | 1 cut(s) | 81 |
| PspLI | CGTACG | 1 cut(s) | 429 |
| PspN4I | GGNNCC | 2 cut(s) | 131, 400 |
| PsuI | RGATCY | 2 cut(s) | 111, 434 |
| RsaI | GTAC | 2 cut(s) | 306, 431 |
| RsaNI | GTAC | 2 cut(s) | 305, 430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SapI | GCTCTTC | 1 cut(s) | 11 |
| SaqAI | TTAA | 5 cut(s) | 81, 93, 101, 236, 378 |
| Sau3AI | GATC | 3 cut(s) | 111, 342, 434 |
| ScaI | AGTACT | 1 cut(s) | 306 |
| SetI | ASST | 8 cut(s) | 72, 135, 173, 303, 363, 431, 481, 499 |
| SfaNI | GCATC | 2 cut(s) | 192, 261 |
| SfoI | GGCGCC | 1 cut(s) | 400 |
| SfuI | TTCGAA | 1 cut(s) | 73 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SmlI | CTYRAG | 2 cut(s) | 143, 318 |
| SmoI | CTYRAG | 2 cut(s) | 143, 318 |
| Sse9I | AATT | 9 cut(s) | 39, 50, 82, 89, 97, 212, 365, 389, 465 |
| SspDI | GGCGCC | 1 cut(s) | 398 |
| SspMI | CTAG | 2 cut(s) | 29, 189 |
| StyI | CCWWGG | 1 cut(s) | 407 |
| TaaI | ACNGT | 1 cut(s) | 220 |
| TaiI | ACGT | 1 cut(s) | 431 |
| TaqI | TCGA | 2 cut(s) | 73, 297 |
| TasI | AATT | 9 cut(s) | 39, 50, 82, 89, 97, 212, 365, 389, 465 |
| TatI | WGTACW | 1 cut(s) | 304 |
| Tru1I | TTAA | 5 cut(s) | 81, 93, 101, 236, 378 |
| Tru9I | TTAA | 5 cut(s) | 81, 93, 101, 236, 378 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TseFI | GTSAC | 1 cut(s) | 479 |
| Tsp45I | GTSAC | 1 cut(s) | 479 |
| TspDTI | ATGAA | 1 cut(s) | 489 |
| TspGWI | ACGGA | 1 cut(s) | 447 |
| TspRI | CASTG | 1 cut(s) | 400 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 408 |
| VspI | ATTAAT | 1 cut(s) | 81 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 123 |
| XapI | RAATTY | 3 cut(s) | 39, 212, 465 |
| XceI | RCATGY | 2 cut(s) | 271, 385 |
| XspI | CTAG | 2 cut(s) | 29, 189 |
| ZrmI | AGTACT | 1 cut(s) | 306 |