RchiOBHm_Chr0c44g0503541

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000111
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
ATGAGGCGTGGGTTTTATTTGGTTAACCCTGCAACCAGGGAGATGAAGAAAGTACCAAAGACACCATCATGGAGACCTGTGAGGCCCTTTTGCTTGAGCTTATGTGGATTTGGATTTGATTCCTCCACCAATGAGTACAAGGTGGTTAACGGGCAGGTCTATTCTGATATCAATGTAATCGTATTTAGTGTCTATACACTGAAAACTGATTCTTGGCGAAAGATCGAGTGCTTCTCTCCCTACCATGCTTATTGGTTTCAGGGGATTTTTCTGAATGGAGCTATTCATTGGTCGGCAACGACAGTTGGAGATCGATCCTCTTCGGTGATTGTATCTTTTCTATTAGCAGAGGAGGAGGTTCGCGAAATTCGACTCCCACCCATCGGTGATACTTGTTTAGCAAACCTGGGAGTGTTTAGAGATTGCCTATGTATAACGCTCGCTGGTATTGATCAAACATTCAATGAGTTTTGGGTCATGAAAGAATATGGGGTGAGCGAGTCTTGGACTAGAATGAGGGTCTCCATGCCATATCACCAATTGTCACATTTTGGTTTCTCTACAAAATCTCATGATTTGATGGTGTGTGGAAGTTCATTTGTTATGTACGACTTCAAAGAAGAAAGTTTTAGGAACCTTCCAATTCGTGATACCACCTTAGGAGGTAATGGTGTTGGGGTTTATGTTGAGGGACTTTTTCCACTAATCGATCGAGAGCAGGACGAGAGCCGTAGAGTAGATAATCAAGTATTGATTAAGCTCAAGCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

257

Amino Acids

29.48

Weight (kDa)

6.99

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 6 - 190 3e-17 F-box associated beta propeller domain
FBA_3 PF08268 7 - 189 8.8e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccII CGCG 1 cut(s) 363
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 366
AfaI GTAC 3 cut(s) 54, 137, 608
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 2 cut(s) 463, 616
AjnI CCWGG 2 cut(s) 35, 405
AluBI AGCT 3 cut(s) 99, 281, 760
AluI AGCT 3 cut(s) 99, 281, 760
Alw26I GTCTC 2 cut(s) 67, 526
AlwI GGATC 1 cut(s) 309
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 4 cut(s) 337, 398, 505, 527
AxyI CCTNAGG 1 cut(s) 658
BccI CCATC 3 cut(s) 73, 389, 574
BceAI ACGGC 1 cut(s) 714
BciT130I CCWGG 2 cut(s) 37, 407
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 67, 526
BfaI CTAG 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 37, 407
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 2 cut(s) 37, 407
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpuEI CTTGAG 2 cut(s) 115, 746
Bsa29I ATCGAT 2 cut(s) 313, 708
BsaI GGTCTC 2 cut(s) 67, 526
BsaJI CCNNGG 2 cut(s) 36, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 658
BseBI CCWGG 2 cut(s) 37, 407
BseCI ATCGAT 2 cut(s) 313, 708
BseDI CCNNGG 2 cut(s) 36, 406
BseLI CCNNNNNNNGG 1 cut(s) 383
BseRI GAGGAG 2 cut(s) 365, 368
Bsh1236I CGCG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 712
BshFI GGCC 1 cut(s) 85
BshVI ATCGAT 2 cut(s) 313, 708
BsiEI CGRYCG 1 cut(s) 712
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 67, 526
BsmFI GGGAC 1 cut(s) 705
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 2 cut(s) 67, 526
Bsp143I GATC 5 cut(s) 222, 310, 314, 451, 709
Bsp68I TCGCGA 1 cut(s) 363
BspANI GGCC 1 cut(s) 85
BspDI ATCGAT 2 cut(s) 313, 708
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 2 cut(s) 477, 571
BspLI GGNNCC 1 cut(s) 635
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 1 cut(s) 309
BspTNI GGTCTC 2 cut(s) 67, 526
BssECI CCNNGG 2 cut(s) 36, 406
BssMI GATC 5 cut(s) 222, 310, 314, 451, 709
Bst2UI CCWGG 2 cut(s) 37, 407
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 441, 768
BstDEI CTNAG 1 cut(s) 658
BstFNI CGCG 1 cut(s) 363
BstKTI GATC 5 cut(s) 225, 313, 317, 454, 712
BstMAI GTCTC 2 cut(s) 67, 526
BstMBI GATC 5 cut(s) 222, 310, 314, 451, 709
BstMCI CGRYCG 1 cut(s) 712
BstNI CCWGG 2 cut(s) 37, 407
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 35, 405
BstUI CGCG 1 cut(s) 363
Bsu15I ATCGAT 2 cut(s) 313, 708
Bsu36I CCTNAGG 1 cut(s) 658
BsuRI GGCC 1 cut(s) 85
BsuTUI ATCGAT 2 cut(s) 313, 708
BtsIMutI CAGTG 1 cut(s) 197
BtuMI TCGCGA 1 cut(s) 363
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 441, 768
CciI TCATGA 2 cut(s) 477, 571
Cfr13I GGNCC 1 cut(s) 84
ClaI ATCGAT 2 cut(s) 313, 708
Csp6I GTAC 3 cut(s) 53, 136, 607
CviAII CATG 6 cut(s) 69, 245, 478, 526, 572, 767
CviJI RGCY 5 cut(s) 85, 99, 281, 729, 760
CviKI_1 RGCY 5 cut(s) 85, 99, 281, 729, 760
CviQI GTAC 3 cut(s) 53, 136, 607
DdeI CTNAG 1 cut(s) 658
DpnI GATC 5 cut(s) 224, 312, 316, 453, 711
DpnII GATC 5 cut(s) 222, 310, 314, 451, 709
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco31I GGTCTC 2 cut(s) 67, 526
Eco32I GATATC 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 658
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 35, 405
EcoRV GATATC 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 6 cut(s) 72, 248, 481, 529, 575, 770
FaqI GGGAC 1 cut(s) 705
FatI CATG 6 cut(s) 68, 244, 477, 525, 571, 766
FbaI TGATCA 1 cut(s) 451
FspBI CTAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 6 cut(s) 72, 248, 481, 529, 575, 770
HincII GTYRAC 2 cut(s) 25, 148
HindII GTYRAC 2 cut(s) 25, 148
HinfI GANTC 4 cut(s) 119, 209, 372, 500
HpaI GTTAAC 2 cut(s) 25, 148
HphI GGTGA 4 cut(s) 337, 398, 505, 527
Hpy166II GTNNAC 2 cut(s) 25, 148
Hpy188I TCNGA 2 cut(s) 166, 273
Hpy188III TCNNGA 5 cut(s) 362, 478, 572, 647, 713
Hpy8I GTNNAC 2 cut(s) 25, 148
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 32, 770
HpyF3I CTNAG 1 cut(s) 658
Hsp92II CATG 6 cut(s) 72, 248, 481, 529, 575, 770
Ksp22I TGATCA 1 cut(s) 451
KspAI GTTAAC 2 cut(s) 25, 148
Kzo9I GATC 5 cut(s) 222, 310, 314, 451, 709
LmnI GCTCC 1 cut(s) 278
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 543
MalI GATC 5 cut(s) 224, 312, 316, 453, 711
MboI GATC 5 cut(s) 222, 310, 314, 451, 709
MboII GAAGA 3 cut(s) 58, 312, 632
MfeI CAATTG 1 cut(s) 539
MluCI AATT 3 cut(s) 366, 539, 642
MlyI GAGTC 2 cut(s) 366, 509
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 9 cut(s) 75, 133, 328, 343, 346, 349, 510, 656, 682
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 3 cut(s) 24, 147, 756
MslI CAYNNNNRTG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 37, 407
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 2 cut(s) 37, 407
MvnI CGCG 1 cut(s) 363
NdeII GATC 5 cut(s) 222, 310, 314, 451, 709
NlaIII CATG 6 cut(s) 72, 248, 481, 529, 575, 770
NlaIV GGNNCC 1 cut(s) 635
NmuCI GTSAC 1 cut(s) 543
NruI TCGCGA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 1 cut(s) 770
PaeI GCATGC 1 cut(s) 770
PagI TCATGA 2 cut(s) 477, 571
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PfeI GAWTC 2 cut(s) 119, 209
Ple19I CGATCG 1 cut(s) 712
PleI GAGTC 2 cut(s) 366, 508
PpsI GAGTC 2 cut(s) 366, 508
Psp6I CCWGG 2 cut(s) 35, 405
PspGI CCWGG 2 cut(s) 35, 405
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 1 cut(s) 84
PvuI CGATCG 1 cut(s) 712
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 3 cut(s) 54, 137, 608
RsaNI GTAC 3 cut(s) 53, 136, 607
RseI CAYNNNNRTG 1 cut(s) 67
SaqAI TTAA 3 cut(s) 24, 147, 756
Sau3AI GATC 5 cut(s) 222, 310, 314, 451, 709
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 2 cut(s) 366, 509
ScrFI CCNGG 2 cut(s) 37, 407
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 94, 761
SmoI CTYRAG 2 cut(s) 94, 761
SphI GCATGC 1 cut(s) 770
Sse9I AATT 3 cut(s) 366, 539, 642
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 35, 405
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 5 cut(s) 225, 313, 370, 708, 712
TasI AATT 3 cut(s) 366, 539, 642
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 119, 209
Tru1I TTAA 3 cut(s) 24, 147, 756
Tru9I TTAA 3 cut(s) 24, 147, 756
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 543
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 59, 275, 494, 585
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 366
XceI RCATGY 1 cut(s) 770
XspI CTAG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.