RchiOBHm_Chr4g0404511

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
24263812 .. 24264309
498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37605

Sequence Viewer

Length: 498 bp
ATGAAATTAATTAGTTGTAAAAGTGTTAGTGACCAACATGTAGTAGTGGTCACTGATTCAATAGTATTTGTGACAAACATTGATGTGGTCACTAACAATTTGGTCACTAATACCAGATTTTGTTGTAGTGCTGGCACCATACCTCCTACCATTGGTAACATGTCGAGCTTGAAAGTCTTTGATTTGGGGCCTAATTACATTACAGGAAGTATTCCGAGGGAACTGGGGCGTCTTTCCAATCTAAACTTCTTTACTTTTTATGGAAATAGCCTAACACATGCAATACCTCAAGAACTTTTCAACATGTCATCCTTGCAAACTTTCTCACTTCAACATAATTCCCTTTCTGGAACTTTTCCTCCATACAACAAGATTTTTCTTCCCAACCTTGAAAACCTCTATTATTCTAGTAATCAAATAACTGGAAACCTTTATATTTTATGGACCAATTTTAGCAATTTTACCAACCTTGCTGCCATCATATTTTACCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.49

Weight (kDa)

6.8

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 3 cut(s) 37, 159, 303
AgsI TTSAA 5 cut(s) 60, 172, 301, 332, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 473
AseI ATTAAT 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 188, 444
AvaII GGWCC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 460
BccI CCATC 1 cut(s) 485
BfaI CTAG 1 cut(s) 408
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 188, 444
BmiI GGNNCC 2 cut(s) 136, 189
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 228, 427
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 228, 427
BseXI GCAGC 1 cut(s) 460
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 1 cut(s) 190
BspANI GGCC 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 136, 189
BspT107I GGYRCC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 228, 427
BssECI CCNNGG 1 cut(s) 215
BssNI GRCGYC 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 308
BstNSI RCATGY 4 cut(s) 41, 163, 281, 307
BstV1I GCAGC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 188, 444
CseI GACGC 1 cut(s) 218
CviAII CATG 4 cut(s) 38, 160, 278, 304
CviJI RGCY 3 cut(s) 168, 190, 270
CviKI_1 RGCY 3 cut(s) 168, 190, 270
Eco47I GGWCC 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 188
FaeI CATG 4 cut(s) 41, 163, 281, 307
FatI CATG 4 cut(s) 37, 159, 277, 303
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 474
FspBI CTAG 1 cut(s) 408
GluI GCNGC 1 cut(s) 474
HaeIII GGCC 1 cut(s) 190
HgaI GACGC 1 cut(s) 218
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 4 cut(s) 41, 163, 281, 307
HinfI GANTC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 290, 348
HpyCH4V TGCA 2 cut(s) 281, 316
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 4 cut(s) 41, 163, 281, 307
LpnPI CCDG 6 cut(s) 117, 127, 189, 209, 333, 408
Lsp1109I GCAGC 1 cut(s) 460
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 6 cut(s) 29, 49, 70, 88, 103, 155
MboII GAAGA 1 cut(s) 371
MluCI AATT 8 cut(s) 5, 9, 97, 193, 337, 448, 457, 491
MnlI CCTC 5 cut(s) 153, 210, 297, 369, 407
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 83
NlaIII CATG 4 cut(s) 41, 163, 281, 307
NlaIV GGNNCC 2 cut(s) 136, 189
NmuCI GTSAC 5 cut(s) 29, 49, 70, 88, 103
NspI RCATGY 4 cut(s) 41, 163, 281, 307
PciI ACATGT 3 cut(s) 37, 159, 303
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 475
PscI ACATGT 3 cut(s) 37, 159, 303
PshBI ATTAAT 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 136, 189
PspPI GGNCC 2 cut(s) 188, 444
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 474
Sau96I GGNCC 2 cut(s) 188, 444
SetI ASST 7 cut(s) 145, 170, 289, 390, 399, 432, 471
SinI GGWCC 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 8 cut(s) 5, 9, 97, 193, 337, 448, 457, 491
SspMI CTAG 1 cut(s) 408
TaqI TCGA 1 cut(s) 164
TasI AATT 8 cut(s) 5, 9, 97, 193, 337, 448, 457, 491
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 5 cut(s) 29, 49, 70, 88, 103
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 5 cut(s) 29, 49, 70, 88, 103
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 444
VspI ATTAAT 1 cut(s) 8
XceI RCATGY 4 cut(s) 41, 163, 281, 307
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.