RchiOBHm_Chr5g0011141

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
7358212 .. 7361298
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29184

Sequence Viewer

Length: 2967 bp
ATGCACATATATCATGTAGTAAATTTGATATTTACATACATTATGTTTATCTTTCTTTTAGAAATTCCAAATGAGATCAGTGCTTTAACTCAACTGGAGAAGTTGGCTGTGGAAGAAAACGCCCTAGAAGGAAATGTTCCTATGGTTGTCTTCAACATGTCTTCTTTGATTATTTTGACTCTACATGGAAACAACTTGAAGGGTAGACTTCCAGACAATATGTGTCAGAATCTTCCTTATATTCAAGGGTTGTATTTCAGTCAGAACAAGCTTGAAGGTCCACTTCCATCCATATTTTGGCAATACAAACAACTTGTTGATTTAGCATTGTGGCGTAACAACTTCAGTGGAAGCATACCCAAAAATATTGGGAATGCAACCCAGTTAATGCAGCTTGATCTTAGCGAAAATAATTTAACAGGTACATGCATGTACCCTTCATCACGATTTATTTCTTATAGAGTAATTGAGAAATATATCATTATACATTCCTATATGATGTTAGTTGTATGTCTAAATAAATTGAATAATAAAGGGTCATATTTTTTAAAAAAACTGACTCTATATATTATTGGGGCAGGTACTGTACCATATGAGATTGGTCATCTTTCAAATTTAGTGACATTGAAGCTCACTGCTAATAATCTGAATGGCCTCCTCCCAACCACAATCCTCAATAATTCCACAATAGTGGGTATAGATCTAGGTGAGAATCAGCTCTTAGGGAGCCTCCCAACAAACATAGGTCGCGGGCTTCCAAATCTACAATATCTCTTCCTACCAGCAAATAAACTGAGTGGAGTAATCCCCAAATCCATCTCCAATGCTTCTCAACTCGCAATCCTAGACATGGGATATAACTTATTCTATGGTTTTATTCCCAGCACGCTATGTGCCTTAACAAACCTTCAGATTCTTTCTTTATCAGAGAATAATTTAACTCTTGAAACTACTACTCCGGAACAAAATGTTCTCTCTTGCTTGAAAAATCTTAAAAATTTGTGGCAGTTAGTCTTCTCAAGCAATCCATTAAATATCAACCTCCCTATTTCCTGCTGGAATCTCTCTACATCACTTCAGGAGGTTTATATGTCCAACTGCAACATGAGAGGTAACATTCCCAATGATATAGGCAACTTGAGCAGCTTGACCATCTTAGCCCTACATGACAATAAATTAAGTGGATCAATCCCAACCTCAATTGGAAGACTACAAAATCTCCAAGGTTTGGAATTGGGAGATAACAAATTGCAAGGACACATTCCGGTTGAAGTTTGTCGACTACAAAACCTAGCAATCTTAGAGTTGGGTGGTAACCAACTATCTGGCTCTATACCTTCTTGCTTGGGTCATCTAGTCAACCCACTAAGAATTCTATCATTAGGGTCCAATTTGTTGAATTCCACAATACCATCTATCCTGTGGGAACTTACAGATATCTTGCATGTAAACTTGTCATCCAATAATCTAAGTGGATCTGTCTCGGAAGATGTTGGTAATCTGAAAGTTGTCATAAATATAGATTTATCAAACAACCACTTATCCGGTAGTATACCAAGCAGCATTGGAAATTTACAAAGCTTGGTCAATCTCTCCTTGGCGAATAATAAGTTCGGAGGCCTTATTCCTAGTTCACTTGGCAAGTCCCTCAGCTTGGAACTTTTAGATTTATCCAAAAATAATCTGTCTGGAATAATTCCAAAGTCACTCGAATCTCTAAAATATCTCAAAATTTTGAATTTGTCTTTCAACAAACTCCAAGGAGAAATCCCAATAGGTGGGCCTTTCCGAAACTTATCTGCTCAATCATTTGTATCGAGTGGGAGACTTTGTGGTGCACCTCGATTTCATGTCCCATCATGCAATAATAGTACATTTGAGGCACATTCAACTAAAGCAAGCATATCCAACTTGAAGTACATTATACCAGTGATCTTGTCAGCAATGTTCATGGTTACCTCCATTTGGATAGTGAAACTACGTAGAAGAAAGAATGTGGAAGCTGCAAAAGAGACAGCATTGTTACCTCAACCTCTATGGAGAAGAGTTTCACACCAGGAACTTGTTAAAGCAACAAATGCATTTGATGAAATCAACTTACTTGGCAGTGGTGGTTTTGGCTCAGTATATAAAGGAACATTTTCTGATGGGATAAATGTGGCCATAAAGGTTTTCAATTTACAGCTAGAAGGGGCATTCAAGAGTTTCGAAATTGAGTGTGAAATGCTAGGCAACATTCGTCATCGAAATCTTATCAAAATCATCAGTTGCTGCAATCAAATTAATTTCAAAGCCGTGGTACTGAACTACATGCCTAATGGGAGCCTTGAGAAGTGGTTGTATTCTCAAAACTTTTGTTTGGATATCCTACAGAGATTGAGTATTATGATTGATGTTGCATCAGCATTAGAATACCTTCATCATGGTTATGAAATACCAATCGTCCACTGTGATTTGAAGCCCAGCAATATCCTACTGGATGCGGATATGAGTGCACATATTGCTGACTTTGGCATTGCAAAGCTCTTGTATGGAAGAGATTCGATGACCCAAACCATCACTCAAGCCACAATTGGATATATGGCCCCAGAGTATGGAATGGAAGGAATAGTTACTAGAAGAGGGGATGTGTACAGTTTTGGCATCGTATTAATGGAAACATTCACAGGAACGAAGCCAACAGATGAGATTTTTGATGGGGAAATGAGTTTGAAGCAATGGATTGCAAATTCACCGTTAATTGATGTTGTGGATGCCAACTTACTCGGGACAAAAGCAGAGGATCGTGATTTTGTGAAGAATAGCGAGTGTTTGTCATCCATAATGAGATTAGGTCTAGCTTGTTCCGCAGAATCACCGGAAGTGAGGATGAATATGCAAGAGGCTCTAGCCACGCTGAACAAGATCAAGATCAAGTTTTTGAAGGACGCTGCCGGAGGTGTGGTGTTGAACCGTTCTCTTGTTTAA

Protein Analysis

988

Amino Acids

108.82

Weight (kDa)

7.23

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 253 - 313 7.6e-07 Leucine rich repeat
LRR_14 PF23598 365 - 463 1.3e-07 Leucine-rich repeat region
LRR_8 PF13855 382 - 441 6.9e-07 Leucine rich repeat
LRR_14 PF23598 456 - 586 1e-07 Leucine-rich repeat region
LRR_8 PF13855 527 - 586 4.2e-07 Leucine rich repeat
Pkinase PF00069 696 - 964 7.9e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 699 - 963 5.2e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 569
AccB7I CCANNNNNTGG 4 cut(s) 297, 1228, 1778, 2594
AccI GTMKAC 3 cut(s) 205, 1279, 1552
AccII CGCG 1 cut(s) 750
AccIII TCCGGA 1 cut(s) 958
AciI CCGC 3 cut(s) 750, 2483, 2847
AclWI GGATC 3 cut(s) 1192, 1483, 2790
AcoI YGGCCR 1 cut(s) 2160
AcuI CTGAAG 3 cut(s) 328, 893, 1061
AfaI GTAC 8 cut(s) 424, 434, 583, 588, 1873, 1919, 2301, 2633
AfiI CCNNNNNNNGG 7 cut(s) 297, 850, 1228, 1654, 1778, 1965, 2594
AflIII ACRYGT 1 cut(s) 156
AjnI CCWGG 1 cut(s) 2055
AleI CACNNNNGTG 1 cut(s) 689
Alw21I GWGCWC 2 cut(s) 1840, 2497
Alw26I GTCTC 3 cut(s) 1486, 1819, 2006
Alw44I GTGCAC 2 cut(s) 1836, 2493
AlwI GGATC 3 cut(s) 1192, 1483, 2790
AlwNI CAGNNNCTG 2 cut(s) 584, 2271
Ama87I CYCGRG 1 cut(s) 2765
Aor13HI TCCGGA 1 cut(s) 958
AoxI GGCC 5 cut(s) 652, 1618, 1781, 2160, 2583
ApaLI GTGCAC 2 cut(s) 1836, 2493
ApeKI GCWGC 6 cut(s) 391, 1143, 1560, 2003, 2271, 2930
AseI ATTAAT 2 cut(s) 2283, 2651
Asp700I GAANNNNTTC 4 cut(s) 2047, 2140, 2415, 2539
AspS9I GGNCC 4 cut(s) 278, 1386, 1781, 2584
AsuHPI GGTGA 3 cut(s) 719, 2724, 2847
AsuII TTCGAA 1 cut(s) 2208
AvaI CYCGRG 1 cut(s) 2765
AvaII GGWCC 2 cut(s) 278, 1386
BaeGI GKGCMC 2 cut(s) 1840, 2497
BalI TGGCCA 1 cut(s) 2162
BbsI GAAGAC 4 cut(s) 142, 153, 1006, 1213
Bbv12I GWGCWC 2 cut(s) 1840, 2497
BbvCI CCTCAGC 1 cut(s) 1649
BbvI GCAGC 6 cut(s) 403, 1155, 1572, 1990, 2258, 2917
BccI CCATC 8 cut(s) 295, 824, 1160, 1420, 1864, 2141, 2564, 2690
BceAI ACGGC 1 cut(s) 2279
BciT130I CCWGG 1 cut(s) 2057
BcoDI GTCTC 3 cut(s) 1486, 1819, 2006
BfmI CTRYAG 1 cut(s) 2369
BfuAI ACCTGC 1 cut(s) 569
BglII AGATCT 1 cut(s) 700
BisI GCNGC 6 cut(s) 392, 1144, 1561, 2004, 2272, 2931
BlsI GCNGC 6 cut(s) 393, 1145, 1562, 2005, 2273, 2932
Bme1390I CCNGG 1 cut(s) 2057
Bme18I GGWCC 2 cut(s) 278, 1386
BmeT110I CYCGRG 1 cut(s) 2765
BmgT120I GGNCC 4 cut(s) 278, 1386, 1781, 2584
BmiI GGNNCC 4 cut(s) 728, 1387, 2324, 2586
BmrFI CCNGG 1 cut(s) 2057
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 4 cut(s) 2408, 2470, 2652, 2743
BmuI ACTGGG 1 cut(s) 376
BpiI GAAGAC 4 cut(s) 142, 153, 1006, 1213
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 1649
Bpu14I TTCGAA 1 cut(s) 2208
BpuEI CTTGAG 4 cut(s) 1003, 1159, 2348, 2547
BsaAI YACGTR 1 cut(s) 1982
BsaBI GATNNNNATC 1 cut(s) 2909
BsaJI CCNNGG 4 cut(s) 1222, 1596, 1759, 2295
BsaWI WCCGGW 4 cut(s) 958, 1264, 1544, 2857
BsaXI ACNNNNNCTCC 8 cut(s) 940, 970, 1203, 1233, 1816, 1846, 2928, 2958
Bsc4I CCNNNNNNNGG 7 cut(s) 297, 850, 1228, 1654, 1778, 1965, 2594
Bse1I ACTGG 4 cut(s) 99, 382, 1928, 2481
Bse3DI GCAATG 3 cut(s) 1950, 2514, 2723
Bse8I GATNNNNATC 1 cut(s) 2909
BseAI TCCGGA 1 cut(s) 958
BseBI CCWGG 1 cut(s) 2057
BseDI CCNNGG 4 cut(s) 1222, 1596, 1759, 2295
BseGI GGATG 7 cut(s) 287, 1457, 2485, 2632, 2758, 2816, 2874
BseJI GATNNNNATC 1 cut(s) 2909
BseLI CCNNNNNNNGG 7 cut(s) 297, 850, 1228, 1654, 1778, 1965, 2594
BseMI GCAATG 3 cut(s) 1950, 2514, 2723
BseMII CTCAG 3 cut(s) 785, 1663, 2136
BseNI ACTGG 4 cut(s) 99, 382, 1928, 2481
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 2 cut(s) 1840, 2497
BseXI GCAGC 6 cut(s) 403, 1155, 1572, 1990, 2258, 2917
BseYI CCCAGC 2 cut(s) 881, 2462
Bsh1236I CGCG 1 cut(s) 750
BshFI GGCC 5 cut(s) 654, 1620, 1783, 2162, 2585
BsiHKAI GWGCWC 2 cut(s) 1840, 2497
BsiHKCI CYCGRG 1 cut(s) 2765
BsiSI CCGG 5 cut(s) 959, 1265, 1545, 2858, 2934
BslFI GGGAC 3 cut(s) 1630, 1838, 2782
BslI CCNNNNNNNGG 7 cut(s) 297, 850, 1228, 1654, 1778, 1965, 2594
BsmAI GTCTC 3 cut(s) 1486, 1819, 2006
BsmFI GGGAC 3 cut(s) 1630, 1838, 2782
BsmI GAATGC 2 cut(s) 379, 2195
BsnI GGCC 5 cut(s) 654, 1620, 1783, 2162, 2585
BsoBI CYCGRG 1 cut(s) 2765
Bsp119I TTCGAA 1 cut(s) 2208
Bsp1286I GDGCHC 2 cut(s) 1840, 2497
Bsp13I TCCGGA 1 cut(s) 958
Bsp1407I TGTACA 1 cut(s) 2631
Bsp143I GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
BspACI CCGC 3 cut(s) 750, 2483, 2847
BspANI GGCC 5 cut(s) 654, 1620, 1783, 2162, 2585
BspCNI CTCAG 3 cut(s) 786, 1662, 2135
BspEI TCCGGA 1 cut(s) 958
BspFNI CGCG 1 cut(s) 750
BspLI GGNNCC 4 cut(s) 728, 1387, 2324, 2586
BspMI ACCTGC 1 cut(s) 569
BspPI GGATC 3 cut(s) 1192, 1483, 2790
BspT104I TTCGAA 1 cut(s) 2208
BsrDI GCAATG 3 cut(s) 1950, 2514, 2723
BsrGI TGTACA 1 cut(s) 2631
BsrI ACTGG 4 cut(s) 99, 382, 1928, 2481
BssECI CCNNGG 4 cut(s) 1222, 1596, 1759, 2295
BssMI GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
BssNAI GTATAC 1 cut(s) 1553
BssT1I CCWWGG 3 cut(s) 1222, 1596, 1759
Bst1107I GTATAC 1 cut(s) 1553
Bst2UI CCWGG 1 cut(s) 2057
Bst4CI ACNGT 5 cut(s) 586, 2450, 2636, 2736, 2954
Bst6I CTCTTC 4 cut(s) 779, 2038, 2530, 2614
BstAPI GCANNNNNTGC 2 cut(s) 2078, 2501
BstAUI TGTACA 1 cut(s) 2631
BstBAI YACGTR 1 cut(s) 1982
BstBI TTCGAA 1 cut(s) 2208
BstC8I GCNNGC 3 cut(s) 752, 887, 1900
BstDEI CTNAG 9 cut(s) 401, 721, 794, 1156, 1300, 1367, 1469, 1649, 2122
BstDSI CCRYGG 1 cut(s) 2295
BstEII GGTNACC 2 cut(s) 1313, 1954
BstF5I GGATG 7 cut(s) 287, 1457, 2485, 2632, 2758, 2816, 2874
BstFNI CGCG 1 cut(s) 750
BstKTI GATC 9 cut(s) 78, 400, 703, 1187, 1478, 1935, 2785, 2907, 2913
BstMAI GTCTC 3 cut(s) 1486, 1819, 2006
BstMBI GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
BstMWI GCNNNNNNNGC 4 cut(s) 1140, 2078, 2501, 2846
BstNI CCWGG 1 cut(s) 2057
BstNSI RCATGY 5 cut(s) 160, 429, 433, 1448, 2314
BstPI GGTNACC 2 cut(s) 1313, 1954
BstSCI CCNGG 1 cut(s) 2055
BstSFI CTRYAG 1 cut(s) 2369
BstSLI GKGCMC 2 cut(s) 1840, 2497
BstSNI TACGTA 1 cut(s) 1982
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 6 cut(s) 403, 1155, 1572, 1990, 2258, 2917
BstV2I GAAGAC 4 cut(s) 142, 153, 1006, 1213
BstX2I RGATCY 2 cut(s) 700, 1475
BstXI CCANNNNNNTGG 2 cut(s) 691, 1325
BstYI RGATCY 2 cut(s) 700, 1475
BstZ17I GTATAC 1 cut(s) 1553
BsuRI GGCC 5 cut(s) 654, 1620, 1783, 2162, 2585
BtgI CCRYGG 1 cut(s) 2295
BtsCI GGATG 7 cut(s) 287, 1457, 2485, 2632, 2758, 2816, 2874
BtsI GCAGTG 2 cut(s) 633, 2113
BtsIMutI CAGTG 6 cut(s) 85, 352, 633, 1935, 2113, 2446
BveI ACCTGC 1 cut(s) 569
Cac8I GCNNGC 3 cut(s) 752, 887, 1900
CaiI CAGNNNCTG 2 cut(s) 584, 2271
Cfr13I GGNCC 4 cut(s) 278, 1386, 1781, 2584
CseI GACGC 1 cut(s) 2936
Csp6I GTAC 8 cut(s) 423, 433, 582, 587, 1872, 1918, 2300, 2632
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviQI GTAC 8 cut(s) 423, 433, 582, 587, 1872, 1918, 2300, 2632
DdeI CTNAG 9 cut(s) 401, 721, 794, 1156, 1300, 1367, 1469, 1649, 2122
DpnI GATC 9 cut(s) 77, 399, 702, 1186, 1477, 1934, 2784, 2906, 2912
DpnII GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
DraI TTTAAA 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 2160
Eam1104I CTCTTC 4 cut(s) 779, 2038, 2530, 2614
EarI CTCTTC 4 cut(s) 779, 2038, 2530, 2614
Eco105I TACGTA 1 cut(s) 1982
Eco130I CCWWGG 3 cut(s) 1222, 1596, 1759
Eco147I AGGCCT 1 cut(s) 1620
Eco32I GATATC 2 cut(s) 1438, 2365
Eco47I GGWCC 2 cut(s) 278, 1386
Eco57I CTGAAG 3 cut(s) 328, 893, 1061
Eco88I CYCGRG 1 cut(s) 2765
Eco91I GGTNACC 2 cut(s) 1313, 1954
EcoO65I GGTNACC 2 cut(s) 1313, 1954
EcoRI GAATTC 2 cut(s) 1371, 1399
EcoRII CCWGG 1 cut(s) 2055
EcoRV GATATC 2 cut(s) 1438, 2365
EcoT14I CCWWGG 3 cut(s) 1222, 1596, 1759
EcoT22I ATGCAT 2 cut(s) 431, 2083
ErhI CCWWGG 3 cut(s) 1222, 1596, 1759
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 3 cut(s) 1630, 1838, 2782
FauI CCCGC 1 cut(s) 743
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 3 cut(s) 205, 1279, 1552
Fnu4HI GCNGC 6 cut(s) 392, 1144, 1561, 2004, 2272, 2931
FokI GGATG 7 cut(s) 274, 1444, 2492, 2639, 2765, 2803, 2881
Fsp4HI GCNGC 6 cut(s) 392, 1144, 1561, 2004, 2272, 2931
GluI GCNGC 6 cut(s) 392, 1144, 1561, 2004, 2272, 2931
GsaI CCCAGC 2 cut(s) 885, 2466
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 5 cut(s) 654, 1620, 1783, 2162, 2585
HapII CCGG 5 cut(s) 959, 1265, 1545, 2858, 2934
HgaI GACGC 1 cut(s) 2936
HincII GTYRAC 2 cut(s) 1280, 1360
HindII GTYRAC 2 cut(s) 1280, 1360
HindIII AAGCTT 2 cut(s) 269, 1579
HinfI GANTC 9 cut(s) 178, 229, 559, 712, 913, 1060, 1712, 2540, 2852
HpaII CCGG 5 cut(s) 959, 1265, 1545, 2858, 2934
HphI GGTGA 3 cut(s) 719, 2724, 2847
HpyCH4III ACNGT 5 cut(s) 586, 2450, 2636, 2736, 2954
HpyCH4IV ACGT 1 cut(s) 1981
HpyF10VI GCNNNNNNNGC 4 cut(s) 1140, 2078, 2501, 2846
HpyF3I CTNAG 9 cut(s) 401, 721, 794, 1156, 1300, 1367, 1469, 1649, 2122
HpySE526I ACGT 1 cut(s) 1981
Kpn2I TCCGGA 1 cut(s) 958
Kzo9I GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
LmnI GCTCC 2 cut(s) 726, 2322
Lsp1109I GCAGC 6 cut(s) 403, 1155, 1572, 1990, 2258, 2917
LweI GCATC 4 cut(s) 2408, 2470, 2652, 2743
MaeII ACGT 1 cut(s) 1981
MaeIII GTNAC 8 cut(s) 335, 619, 1112, 1313, 1704, 1954, 2022, 2611
MalI GATC 9 cut(s) 77, 399, 702, 1186, 1477, 1934, 2784, 2906, 2912
MboI GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
MfeI CAATTG 2 cut(s) 1200, 2571
MflI RGATCY 2 cut(s) 700, 1475
MhlI GDGCHC 2 cut(s) 1840, 2497
MlsI TGGCCA 1 cut(s) 2162
MluNI TGGCCA 1 cut(s) 2162
MlyI GAGTC 2 cut(s) 172, 553
MmeI TCCRAC 2 cut(s) 1119, 1932
Mox20I TGGCCA 1 cut(s) 2162
Mph1103I ATGCAT 2 cut(s) 431, 2083
MroI TCCGGA 1 cut(s) 958
MroXI GAANNNNTTC 4 cut(s) 2047, 2140, 2415, 2539
MscI TGGCCA 1 cut(s) 2162
MslI CAYNNNNRTG 2 cut(s) 689, 2427
Msp20I TGGCCA 1 cut(s) 2162
MspI CCGG 5 cut(s) 959, 1265, 1545, 2858, 2934
MspR9I CCNGG 1 cut(s) 2057
MunI CAATTG 2 cut(s) 1200, 2571
Mva1269I GAATGC 2 cut(s) 379, 2195
MvaI CCWGG 1 cut(s) 2057
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 1140, 2078, 2501, 2846
NdeI CATATG 1 cut(s) 592
NdeII GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
NlaIV GGNNCC 4 cut(s) 728, 1387, 2324, 2586
NmuCI GTSAC 2 cut(s) 619, 1704
NsiI ATGCAT 2 cut(s) 431, 2083
NspI RCATGY 5 cut(s) 160, 429, 433, 1448, 2314
NspV TTCGAA 1 cut(s) 2208
OliI CACNNNNGTG 1 cut(s) 689
PceI AGGCCT 1 cut(s) 1620
PciI ACATGT 1 cut(s) 156
PctI GAATGC 2 cut(s) 379, 2195
PdmI GAANNNNTTC 4 cut(s) 2047, 2140, 2415, 2539
PfeI GAWTC 7 cut(s) 229, 712, 913, 1060, 1712, 2540, 2852
PflMI CCANNNNNTGG 4 cut(s) 297, 1228, 1778, 2594
PkrI GCNGC 6 cut(s) 393, 1145, 1562, 2005, 2273, 2932
PleI GAGTC 2 cut(s) 172, 553
PpsI GAGTC 2 cut(s) 172, 553
Ppu21I YACGTR 1 cut(s) 1982
PscI ACATGT 1 cut(s) 156
PshBI ATTAAT 2 cut(s) 2283, 2651
Psp6I CCWGG 1 cut(s) 2055
PspEI GGTNACC 2 cut(s) 1313, 1954
PspFI CCCAGC 2 cut(s) 881, 2462
PspGI CCWGG 1 cut(s) 2055
PspN4I GGNNCC 4 cut(s) 728, 1387, 2324, 2586
PspPI GGNCC 4 cut(s) 278, 1386, 1781, 2584
PstNI CAGNNNCTG 2 cut(s) 584, 2271
PsuI RGATCY 2 cut(s) 700, 1475
RsaI GTAC 8 cut(s) 424, 434, 583, 588, 1873, 1919, 2301, 2633
RsaNI GTAC 8 cut(s) 423, 433, 582, 587, 1872, 1918, 2300, 2632
RseI CAYNNNNRTG 2 cut(s) 689, 2427
SalI GTCGAC 1 cut(s) 1278
SatI GCNGC 6 cut(s) 392, 1144, 1561, 2004, 2272, 2931
Sau3AI GATC 9 cut(s) 75, 397, 700, 1184, 1475, 1932, 2782, 2904, 2910
Sau96I GGNCC 4 cut(s) 278, 1386, 1781, 2584
SchI GAGTC 2 cut(s) 172, 553
ScrFI CCNGG 1 cut(s) 2057
SduI GDGCHC 2 cut(s) 1840, 2497
SfaNI GCATC 4 cut(s) 2408, 2470, 2652, 2743
SfcI CTRYAG 1 cut(s) 2369
SfuI TTCGAA 1 cut(s) 2208
SinI GGWCC 2 cut(s) 278, 1386
SmiMI CAYNNNNRTG 2 cut(s) 689, 2427
SmlI CTYRAG 4 cut(s) 1018, 1138, 2327, 2562
SmoI CTYRAG 4 cut(s) 1018, 1138, 2327, 2562
SnaBI TACGTA 1 cut(s) 1982
SseBI AGGCCT 1 cut(s) 1620
SsiI CCGC 3 cut(s) 750, 2483, 2847
SspI AATATT 1 cut(s) 367
StuI AGGCCT 1 cut(s) 1620
StyD4I CCNGG 1 cut(s) 2055
StyI CCWWGG 3 cut(s) 1222, 1596, 1759
TaaI ACNGT 5 cut(s) 586, 2450, 2636, 2736, 2954
TaiI ACGT 1 cut(s) 1984
TaqI TCGA 7 cut(s) 1279, 1710, 1817, 1843, 2208, 2245, 2543
TatI WGTACW 3 cut(s) 1871, 1917, 2631
TfiI GAWTC 7 cut(s) 229, 712, 913, 1060, 1712, 2540, 2852
TscAI CASTG 6 cut(s) 85, 352, 640, 1935, 2113, 2453
TseFI GTSAC 2 cut(s) 619, 1704
TseI GCWGC 6 cut(s) 391, 1143, 1560, 2003, 2271, 2930
Tsp45I GTSAC 2 cut(s) 619, 1704
TspDTI ATGAA 7 cut(s) 429, 1838, 1939, 2103, 2408, 2445, 2885
TspRI CASTG 6 cut(s) 85, 352, 640, 1935, 2113, 2453
Van91I CCANNNNNTGG 4 cut(s) 297, 1228, 1778, 2594
VneI GTGCAC 2 cut(s) 1836, 2493
VpaK11BI GGWCC 2 cut(s) 278, 1386
VspI ATTAAT 2 cut(s) 2283, 2651
XceI RCATGY 5 cut(s) 160, 429, 433, 1448, 2314
XcmI CCANNNNNNNNNTGG 2 cut(s) 294, 1419
XmiI GTMKAC 3 cut(s) 205, 1279, 1552
XmnI GAANNNNTTC 4 cut(s) 2047, 2140, 2415, 2539
Zsp2I ATGCAT 2 cut(s) 431, 2083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.