Rroxscaffold_1G00040190

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000058
Physical Location & Seq
Reverse (-)
57789955 .. 57794385
4431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040190.1

Sequence Viewer

Length: 3189 bp
ATGTTGAGAAATCGGATCCTATTATCGATCGCGTTGTTGTTGGTACAATACTGGTCTATAGCCACGGCAGCACAAACAAACATCAGCACAGACCACTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATGACCCTCAAAACATGATCTTGACCAACTGGTCAACCCCCAGCTCCATTTGCAACTGGATTGGCGTTACTTGTGGTGAACGTCATCTTCGAGTTACTGTCTTGAATCTCTCTTACATGGGTGTCACAGGCACCATTCCTCCAGAGCTAGGCAACCTATCATTTCTTGTTGAGCTGCACTTCCGAAATAACAGTTTCCATGGTACCATTCCCCAAGAATTGTCTCGTTTGCGCCGCCTAAAGATTTTTAGCTTCGCATTCAACAACTTCAAAGGAACCATTCCCTCATGGTTAGGTGCCGTATCCAAACTTCAAGTCCTCAATTTGTATGGTAATCAGTTTTCAGGTTTAATACCCACCAACATCTTCAACTTATCTGCACTGCAAGAAATTCATTTTAAGTTCAACCAACTGTCAGGTAGCATACCAAGAGAAATTGGGAACTTAACAAAGCTGAAGTTGATCCAGCTGGACAATAACAATCTCAGAGAAATTCCAAATGAGATTGGCACTTTAAATCAGCTGGTAGAGATAAGTGTAGAAAACAATGCCCTAGAAGGGCATCTTCCTGTGGCTATCTTCAACATGTCTTCTTTGACTTCATTGGCTTTAACATGGAACAGCTTGAATGGTACACTTCCAGACAATATATGTCAGCATCTCCCTAGTATTCAAGAGTTGTATTTGGGAAACAACCAGTTTGTTGGTCCTCTTCCATCCAAATTATGGCAATGCAAAGAGCTTGCTATATTATCATTGGGGAATAATAATTTCAGTGGAAGCATACCCAAAAGTATAGGGAACTTGACCCAGATAAAGTATATTCATCTCGGCCAAAACAACTTGATAGGTACTATACCAGATGAGATTGGTGATCTTCCAAAATTGGAGCTTTTAGCACTCCATTTAAACAATCTCAATGGCCTCATCCCATCCAGAGTCTTCAATATGTCCACCATACAAAGTTTCTCACTTGCTCTTAATCACCTCTCGGGTAGTCTCCCTGCAAACATCGGGCTCGGGATTCCAAACTTAAAAGAATTTCTTGCAGCAGAGAATGAACTTAGTGGACTAATCCCCAACTTCATATCAAATGCTTCCAAGATCACAATGCTAAACTTGGCCAGTAACTCATTTTCAGGGTTTATACCTAGCACAGTTTGTGCCTTACAAAACCTGCAGTGGCTTAACTTGGAGCTAAACCATTTGACCATCGATACTTCTGGTGAAGAAGTAAACTTTCTGTCTTGTTTGGGTACTCTTAGAGATCTGAGGAATTTATACTTGAACTACAATCCATTAAACACCAGCCTTACTGCTTCCTATAGGAATCTCACTGGACTAGAAGATGTTGATATAAGCAACTGCAACATGAGGGGCAGCATTCCCAGTGATATTGGCAATATGAGCAGCTTGATAGCCTTATCCCTGGATTACAATCAATTAAGTGGACCAATTCAAACTACAATGGGAAGCCTAAAGAATCTCCAAGGGTTGTACATGAACGATAACCAACTGCAAGGATACATCCCATATGAACTCTGTCAACTAGAAAAGCTAGTCGATTTGCTGTTGGGTGGTAATAAACTCTCTGGTTCTATACCTTCCTGTTTGGGAAATCTAGCCGCAGCACTGAGAACTCTATCATTGAACTCCAATTTGTTAACTTCCACTATACCGTCTACCATGTGGAGACTCAAATATATCCTGCACGTAAATTTATCGTCCAATTCTCTAATTGGTCTTCTCTCAGAAGATATTGGTAATTTGAAAGTTGTGACAGATATTGATTTATCAAGCAACCATTTATCTGGGATTATGCCAGGAAGCATTGGGGGTCTTCAAGATTTGGTCAATCTCTCCTTGGCAAGTAACAATTTAGAAGGCCCTATTCCTACTTCATTTGGCAACATGCTAAGCCTGGAACTCTTGGATTTATCCCAAAACAATCTATCTGGGGAGATTCCAAAGTCTCTAGAAGCACTCTTGCACCTTAGATATTTGAATCTGTCTTTCAACAGACTCCGCGGAGAAATTCCAACAGGTGGGCCTTTCAGAAACTTCTCTGCTCAATCATTTTTCTCAAATAGTGCACTTTGTGGAGCACCCCAACTGCATATTGCAGCATGCAAAAACAGAACAATCAAGCTGCATTCAACTAAAGCTAGAGGATCCATCTTAAAGTATGCTATTCCAGGGATCATGTCAGTGATACTCCTAGTGACCTCTATATCAATGTTGATACTACGCAGAAAAAGGCATGTGGAAGTTTCAAGAGAGACTACCTTGTGGCCTCAACTTCAATGGAGAAGAGTTTCATATCAAGAGCTTCGAACTGTTACTAATGGATTTAATGAAAGCAACTTGCTTGGCAGTGGGGGGTTTGGCTCAGTGTATAAAGGAACACTATCAGATGGGATAAATGTTGCGATAAAGGTTTTCAATTTACAGCTAGAAGGGGCGTTCACGAGTTTTGATACCGAATGTGAAATGCTAGGCAGTATTCGTCATAGAAACCTCATCAAAATCATCAGTTGCTGCAGCCAAATTGATTTCAAAGCCGTGGTACTGGACTACATGCCTAATGGGAGCCTAGAGAAATGGTTGTATTCTCAAAACTTTTGTTTGAACATCCTGCAGAGGTTGAATATAATGATAGATGTTGCATCGGCATTGGAATACCTTCATCATGGTGCTGAAATACCAATTGTCCATTGCGATTTGAAGCCCAGCAATATATTGTTAGATGATGATATGGTTGGACATGTTGCTGACTTTGGTATTGCAAGACTCTTGGGTGGAGGAGATTCCATGACTCAAACCATGACACTAGCCACAATCGGTTATATGTCTCCAGAGAATGATTTTTCGTTTGTGAGCAAGATAGATTGTTTATCATCCATAATGAGATTAGCTCTAAGCTGTTGTGCAGAGTCACCAGAAGGAAGGATAAATATGCAAGATGCTGTAGGCACACTTAATAAAATCATGATCAAGTTTTTGAAGGACGCTGCAGGAGGTGTGGTTTTACGCCGCCATCTTGCTCAACAGCCCCTTTAG

Protein Analysis

1062

Amino Acids

116.57

Weight (kDa)

6.67

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 68 4e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 77 - 181 2e-06 Leucine-rich repeat region
LRR_14 PF23598 187 - 272 6.1e-09 Leucine-rich repeat region
LRR_14 PF23598 284 - 364 4.5e-06 Leucine-rich repeat region
LRR_8 PF13855 290 - 349 5.7e-06 Leucine rich repeat
LRR_14 PF23598 453 - 595 4.5e-07 Leucine-rich repeat region
LRR_8 PF13855 515 - 573 6.2e-06 Leucine rich repeat
LRR_14 PF23598 588 - 718 2e-08 Leucine-rich repeat region
LRR_8 PF13855 660 - 718 1.2e-07 Leucine rich repeat
Pkinase PF00069 828 - 996 7.5e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 831 - 997 8.1e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 1314
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 3 cut(s) 260, 332, 425
AccB7I CCANNNNNTGG 2 cut(s) 855, 2174
AccI GTMKAC 1 cut(s) 1811
AccII CGCG 2 cut(s) 32, 2157
AciI CCGC 5 cut(s) 364, 1755, 2155, 2157, 3163
AclWI GGATC 6 cut(s) 10, 23, 586, 2295, 2308, 2336
AcoI YGGCCR 2 cut(s) 961, 1251
AcsI RAATTY 6 cut(s) 519, 621, 1169, 1405, 1846, 2163
AcuI CTGAAG 1 cut(s) 605
AdeI CACNNNGTG 1 cut(s) 2228
AfaI GTAC 7 cut(s) 45, 334, 763, 982, 1387, 1628, 2697
AfiI CCNNNNNNNGG 4 cut(s) 278, 687, 855, 2174
AflIII ACRYGT 2 cut(s) 714, 2893
AjnI CCWGG 4 cut(s) 1557, 1951, 2049, 2323
Alw21I GWGCWC 2 cut(s) 2224, 2236
Alw26I GTCTC 6 cut(s) 357, 1133, 1816, 2106, 2402, 2985
Alw44I GTGCAC 1 cut(s) 2220
AlwI GGATC 6 cut(s) 10, 23, 586, 2295, 2308, 2336
AlwNI CAGNNNCTG 1 cut(s) 2667
Ama87I CYCGRG 2 cut(s) 1120, 1148
AoxI GGCC 6 cut(s) 961, 1051, 1251, 2014, 2177, 2420
ApaLI GTGCAC 1 cut(s) 2220
ApoI RAATTY 6 cut(s) 519, 621, 1169, 1405, 1846, 2163
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
Asp700I GAANNNNTTC 2 cut(s) 2443, 2811
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 4 cut(s) 836, 1580, 2015, 2177
AsuHPI GGTGA 6 cut(s) 118, 218, 1013, 1106, 1367, 3057
AsuII TTCGAA 1 cut(s) 2461
AvaI CYCGRG 2 cut(s) 1120, 1148
AvaII GGWCC 2 cut(s) 836, 1580
BaeGI GKGCMC 1 cut(s) 2224
BalI TGGCCA 1 cut(s) 1253
BamHI GGATCC 2 cut(s) 15, 2300
BanI GGYRCC 3 cut(s) 260, 332, 425
BanII GRGCYC 1 cut(s) 1149
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
BauI CACGAG 1 cut(s) 2596
BbsI GAAGAC 4 cut(s) 711, 1063, 1865, 1961
Bbv12I GWGCWC 2 cut(s) 2224, 2236
BccI CCATC 6 cut(s) 853, 1069, 1349, 2312, 2537, 3174
BceAI ACGGC 3 cut(s) 81, 413, 2675
BciT130I CCWGG 4 cut(s) 1559, 1953, 2051, 2325
BciVI GTATCC 2 cut(s) 442, 1646
BclI TGATCA 1 cut(s) 3120
BcoDI GTCTC 6 cut(s) 357, 1133, 1816, 2106, 2402, 2985
BfmI CTRYAG 7 cut(s) 57, 1307, 1453, 2668, 2765, 3096, 3141
BfuAI ACCTGC 1 cut(s) 1314
BfuI GTATCC 2 cut(s) 442, 1646
BglII AGATCT 1 cut(s) 1396
BlpI GCTNAGC 1 cut(s) 2045
Bme1390I CCNGG 4 cut(s) 1559, 1953, 2051, 2325
Bme18I GGWCC 2 cut(s) 836, 1580
BmeT110I CYCGRG 2 cut(s) 1120, 1148
BmgT120I GGNCC 4 cut(s) 836, 1580, 2015, 2177
BmiI GGNNCC 7 cut(s) 17, 262, 334, 406, 427, 2302, 2720
BmrFI CCNGG 4 cut(s) 1559, 1953, 2051, 2325
BmrI ACTGGG 1 cut(s) 1512
BmsI GCATC 4 cut(s) 700, 796, 2804, 3082
BmuI ACTGGG 1 cut(s) 1512
BpiI GAAGAC 4 cut(s) 711, 1063, 1865, 1961
BplI GAGNNNNNCTC 2 cut(s) 3028, 3060
BpmI CTGGAG 2 cut(s) 255, 2967
Bpu1102I GCTNAGC 1 cut(s) 2045
Bpu14I TTCGAA 1 cut(s) 2461
Bsa29I ATCGAT 2 cut(s) 26, 1344
BsaAI YACGTR 1 cut(s) 1843
BsaBI GATNNNNATC 1 cut(s) 1566
BsaJI CCNNGG 8 cut(s) 63, 328, 1557, 1618, 1992, 2155, 2324, 2691
BsaXI ACNNNNNCTCC 4 cut(s) 253, 283, 3138, 3168
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 687, 855, 2174
Bse1I ACTGG 8 cut(s) 56, 164, 191, 826, 1254, 1471, 1518, 2703
Bse3DI GCAATG 2 cut(s) 866, 2842
Bse8I GATNNNNATC 1 cut(s) 1566
BseBI CCWGG 4 cut(s) 1559, 1953, 2051, 2325
BseCI ATCGAT 2 cut(s) 26, 1344
BseDI CCNNGG 8 cut(s) 63, 328, 1557, 1618, 1992, 2155, 2324, 2691
BseGI GGATG 6 cut(s) 845, 1056, 1061, 1656, 2760, 3026
BseJI GATNNNNATC 1 cut(s) 1566
BseLI CCNNNNNNNGG 4 cut(s) 278, 687, 855, 2174
BseMI GCAATG 2 cut(s) 866, 2842
BseMII CTCAG 5 cut(s) 628, 1391, 1754, 1893, 2532
BseNI ACTGG 8 cut(s) 56, 164, 191, 826, 1254, 1471, 1518, 2703
BseRI GAGGAG 1 cut(s) 2946
BseSI GKGCMC 1 cut(s) 2224
BseYI CCCAGC 2 cut(s) 170, 2858
BsgI GTGCAG 4 cut(s) 290, 492, 1823, 3078
Bsh1236I CGCG 2 cut(s) 32, 2157
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 6 cut(s) 963, 1053, 1253, 2016, 2179, 2422
BshNI GGYRCC 3 cut(s) 260, 332, 425
BshVI ATCGAT 2 cut(s) 26, 1344
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 2224, 2236
BsiHKCI CYCGRG 2 cut(s) 1120, 1148
BslI CCNNNNNNNGG 4 cut(s) 278, 687, 855, 2174
BsmAI GTCTC 6 cut(s) 357, 1133, 1816, 2106, 2402, 2985
BsmI GAATGC 3 cut(s) 386, 1512, 2281
BsnI GGCC 6 cut(s) 963, 1053, 1253, 2016, 2179, 2422
BsoBI CYCGRG 2 cut(s) 1120, 1148
Bsp119I TTCGAA 1 cut(s) 2461
Bsp1286I GDGCHC 3 cut(s) 1149, 2224, 2236
Bsp1407I TGTACA 1 cut(s) 1626
Bsp1720I GCTNAGC 1 cut(s) 2045
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 5 cut(s) 364, 1755, 2155, 2157, 3163
BspANI GGCC 6 cut(s) 963, 1053, 1253, 2016, 2179, 2422
BspCNI CTCAG 5 cut(s) 627, 1392, 1755, 1892, 2531
BspDI ATCGAT 2 cut(s) 26, 1344
BspFNI CGCG 2 cut(s) 32, 2157
BspHI TCATGA 1 cut(s) 3117
BspLI GGNNCC 7 cut(s) 17, 262, 334, 406, 427, 2302, 2720
BspMAI CTGCAG 4 cut(s) 1311, 2672, 2769, 3145
BspMI ACCTGC 1 cut(s) 1314
BspPI GGATC 6 cut(s) 10, 23, 586, 2295, 2308, 2336
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 2461
BspT107I GGYRCC 3 cut(s) 260, 332, 425
BsrDI GCAATG 2 cut(s) 866, 2842
BsrGI TGTACA 1 cut(s) 1626
BsrI ACTGG 8 cut(s) 56, 164, 191, 826, 1254, 1471, 1518, 2703
BssECI CCNNGG 8 cut(s) 63, 328, 1557, 1618, 1992, 2155, 2324, 2691
BssSI CACGAG 1 cut(s) 2596
BssT1I CCWWGG 3 cut(s) 328, 1618, 1992
Bst2BI CACGAG 1 cut(s) 2596
Bst2UI CCWGG 4 cut(s) 1559, 1953, 2051, 2325
Bst4CI ACNGT 6 cut(s) 229, 323, 543, 1288, 1809, 2467
Bst6I CTCTTC 3 cut(s) 108, 846, 2434
BstAUI TGTACA 1 cut(s) 1626
BstBAI YACGTR 1 cut(s) 1843
BstBI TTCGAA 1 cut(s) 2461
BstC8I GCNNGC 2 cut(s) 873, 2257
BstDSI CCRYGG 4 cut(s) 63, 328, 2155, 2691
BstF5I GGATG 6 cut(s) 845, 1056, 1061, 1656, 2760, 3026
BstFNI CGCG 2 cut(s) 32, 2157
BstHHI GCGC 1 cut(s) 363
BstMAI GTCTC 6 cut(s) 357, 1133, 1816, 2106, 2402, 2985
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 4 cut(s) 68, 107, 180, 1536
BstNI CCWGG 4 cut(s) 1559, 1953, 2051, 2325
BstNSI RCATGY 6 cut(s) 718, 2044, 2259, 2393, 2710, 2897
BstSCI CCNGG 4 cut(s) 1557, 1951, 2049, 2323
BstSFI CTRYAG 7 cut(s) 57, 1307, 1453, 2668, 2765, 3096, 3141
BstSLI GKGCMC 1 cut(s) 2224
BstUI CGCG 2 cut(s) 32, 2157
BstV2I GAAGAC 4 cut(s) 711, 1063, 1865, 1961
BstX2I RGATCY 3 cut(s) 15, 1396, 2300
BstXI CCANNNNNNTGG 2 cut(s) 833, 1940
BstYI RGATCY 3 cut(s) 15, 1396, 2300
Bsu15I ATCGAT 2 cut(s) 26, 1344
BsuI GTATCC 2 cut(s) 442, 1646
BsuRI GGCC 6 cut(s) 963, 1053, 1253, 2016, 2179, 2422
BsuTUI ATCGAT 2 cut(s) 26, 1344
BtgI CCRYGG 4 cut(s) 63, 328, 2155, 2691
BtsCI GGATG 6 cut(s) 845, 1056, 1061, 1656, 2760, 3026
BtsI GCAGTG 3 cut(s) 509, 1316, 2509
BtsIMutI CAGTG 9 cut(s) 509, 910, 1316, 1464, 1525, 1760, 2343, 2509, 2526
BveI ACCTGC 1 cut(s) 1314
Cac8I GCNNGC 2 cut(s) 873, 2257
CaiI CAGNNNCTG 1 cut(s) 2667
CciI TCATGA 1 cut(s) 3117
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 4 cut(s) 836, 1580, 2015, 2177
Cfr42I CCGCGG 1 cut(s) 2158
ClaI ATCGAT 2 cut(s) 26, 1344
CseI GACGC 1 cut(s) 3146
Csp6I GTAC 7 cut(s) 44, 333, 762, 981, 1386, 1627, 2696
CviQI GTAC 7 cut(s) 44, 333, 762, 981, 1386, 1627, 2696
DraI TTTAAA 2 cut(s) 645, 1038
DraIII CACNNNGTG 1 cut(s) 2228
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 961, 1251
Eam1104I CTCTTC 3 cut(s) 108, 846, 2434
EarI CTCTTC 3 cut(s) 108, 846, 2434
Eco130I CCWWGG 3 cut(s) 328, 1618, 1992
Eco24I GRGCYC 1 cut(s) 1149
Eco47I GGWCC 2 cut(s) 836, 1580
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 2 cut(s) 1120, 1148
EcoO109I RGGNCCY 1 cut(s) 2015
EcoRII CCWGG 4 cut(s) 1557, 1951, 2049, 2323
EcoT14I CCWWGG 3 cut(s) 328, 1618, 1992
EcoT38I GRGCYC 1 cut(s) 1149
ErhI CCWWGG 3 cut(s) 328, 1618, 1992
FalI AAGNNNNNCTT 4 cut(s) 678, 710, 1158, 1190
FauNDI CATATG 1 cut(s) 1663
FbaI TGATCA 1 cut(s) 3120
FblI GTMKAC 1 cut(s) 1811
FokI GGATG 6 cut(s) 832, 1043, 1048, 1643, 2747, 3013
FriOI GRGCYC 1 cut(s) 1149
GlaI GCGC 1 cut(s) 362
GsaI CCCAGC 2 cut(s) 174, 2862
GsuI CTGGAG 2 cut(s) 255, 2967
HaeIII GGCC 6 cut(s) 963, 1053, 1253, 2016, 2179, 2422
HgaI GACGC 1 cut(s) 3146
HhaI GCGC 1 cut(s) 363
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 3 cut(s) 165, 1676, 1794
HindII GTYRAC 3 cut(s) 165, 1676, 1794
HpaI GTTAAC 1 cut(s) 1794
HphI GGTGA 6 cut(s) 118, 218, 1013, 1106, 1367, 3057
Hpy188I TCNGA 7 cut(s) 15, 314, 617, 1401, 1882, 2186, 2542
HpyAV CCTTC 8 cut(s) 680, 1743, 2006, 2579, 2822, 3065, 3069, 3127
HpyCH4III ACNGT 6 cut(s) 229, 323, 543, 1288, 1809, 2467
HpyCH4IV ACGT 2 cut(s) 211, 1842
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 107, 180, 1536
HpySE526I ACGT 2 cut(s) 211, 1842
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 3120
KspAI GTTAAC 1 cut(s) 1794
KspI CCGCGG 1 cut(s) 2158
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 5 cut(s) 179, 1018, 1324, 2231, 2718
LweI GCATC 4 cut(s) 700, 796, 2804, 3082
MaeII ACGT 2 cut(s) 211, 1842
MaeIII GTNAC 9 cut(s) 196, 223, 253, 1256, 1906, 2000, 2350, 2467, 3063
MfeI CAATTG 1 cut(s) 2835
MflI RGATCY 3 cut(s) 15, 1396, 2300
MhlI GDGCHC 3 cut(s) 1149, 2224, 2236
MlsI TGGCCA 1 cut(s) 1253
MluNI TGGCCA 1 cut(s) 1253
MlyI GAGTC 6 cut(s) 1077, 1818, 2145, 2913, 2938, 3071
MmeI TCCRAC 2 cut(s) 2192, 2869
Mox20I TGGCCA 1 cut(s) 1253
MroXI GAANNNNTTC 2 cut(s) 2443, 2811
MscI TGGCCA 1 cut(s) 1253
MslI CAYNNNNRTG 2 cut(s) 2336, 2820
Msp20I TGGCCA 1 cut(s) 1253
MspA1I CMGCKG 3 cut(s) 598, 652, 2157
MspR9I CCNGG 4 cut(s) 1559, 1953, 2051, 2325
MunI CAATTG 1 cut(s) 2835
Mva1269I GAATGC 3 cut(s) 386, 1512, 2281
MvaI CCWGG 4 cut(s) 1559, 1953, 2051, 2325
MvnI CGCG 2 cut(s) 32, 2157
MwoI GCNNNNNNNGC 4 cut(s) 68, 107, 180, 1536
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 1663
NlaIV GGNNCC 7 cut(s) 17, 262, 334, 406, 427, 2302, 2720
NmeAIII GCCGAG 1 cut(s) 939
NmuCI GTSAC 4 cut(s) 253, 1906, 2350, 3063
NspI RCATGY 6 cut(s) 718, 2044, 2259, 2393, 2710, 2897
NspV TTCGAA 1 cut(s) 2461
PaeI GCATGC 1 cut(s) 2259
PagI TCATGA 1 cut(s) 3117
PciI ACATGT 2 cut(s) 714, 2893
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PctI GAATGC 3 cut(s) 386, 1512, 2281
PdmI GAANNNNTTC 2 cut(s) 2443, 2811
PfeI GAWTC 7 cut(s) 235, 1153, 1459, 1612, 2092, 2134, 2936
PflMI CCANNNNNTGG 2 cut(s) 855, 2174
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 6 cut(s) 1076, 1818, 2145, 2913, 2938, 3070
PpsI GAGTC 6 cut(s) 1076, 1818, 2145, 2913, 2938, 3070
Ppu21I YACGTR 1 cut(s) 1843
PscI ACATGT 2 cut(s) 714, 2893
Psp6I CCWGG 4 cut(s) 1557, 1951, 2049, 2323
PspFI CCCAGC 2 cut(s) 170, 2858
PspGI CCWGG 4 cut(s) 1557, 1951, 2049, 2323
PspN4I GGNNCC 7 cut(s) 17, 262, 334, 406, 427, 2302, 2720
PspPI GGNCC 4 cut(s) 836, 1580, 2015, 2177
PstI CTGCAG 4 cut(s) 1311, 2672, 2769, 3145
PstNI CAGNNNCTG 1 cut(s) 2667
PsuI RGATCY 3 cut(s) 15, 1396, 2300
PvuI CGATCG 1 cut(s) 30
PvuII CAGCTG 2 cut(s) 598, 652
RsaI GTAC 7 cut(s) 45, 334, 763, 982, 1387, 1628, 2697
RsaNI GTAC 7 cut(s) 44, 333, 762, 981, 1386, 1627, 2696
RseI CAYNNNNRTG 2 cut(s) 2336, 2820
SacII CCGCGG 1 cut(s) 2158
SapI GCTCTTC 1 cut(s) 108
Sau96I GGNCC 4 cut(s) 836, 1580, 2015, 2177
SchI GAGTC 6 cut(s) 1077, 1818, 2145, 2913, 2938, 3071
ScrFI CCNGG 4 cut(s) 1559, 1953, 2051, 2325
SduI GDGCHC 3 cut(s) 1149, 2224, 2236
SfaNI GCATC 4 cut(s) 700, 796, 2804, 3082
SfcI CTRYAG 7 cut(s) 57, 1307, 1453, 2668, 2765, 3096, 3141
Sfr303I CCGCGG 1 cut(s) 2158
SfuI TTCGAA 1 cut(s) 2461
SgrBI CCGCGG 1 cut(s) 2158
SinI GGWCC 2 cut(s) 836, 1580
SmiMI CAYNNNNRTG 2 cut(s) 2336, 2820
SphI GCATGC 1 cut(s) 2259
SsiI CCGC 5 cut(s) 364, 1755, 2155, 2157, 3163
StyD4I CCNGG 4 cut(s) 1557, 1951, 2049, 2323
StyI CCWWGG 3 cut(s) 328, 1618, 1992
TaaI ACNGT 6 cut(s) 229, 323, 543, 1288, 1809, 2467
TaiI ACGT 2 cut(s) 214, 1845
TaqI TCGA 5 cut(s) 26, 220, 1344, 1692, 2461
TatI WGTACW 1 cut(s) 1626
TauI GCSGC 3 cut(s) 366, 1757, 3165
TfiI GAWTC 7 cut(s) 235, 1153, 1459, 1612, 2092, 2134, 2936
TscAI CASTG 9 cut(s) 516, 910, 1316, 1471, 1525, 1767, 2343, 2509, 2526
TseFI GTSAC 4 cut(s) 253, 1906, 2350, 3063
Tsp45I GTSAC 4 cut(s) 253, 1906, 2350, 3063
TspRI CASTG 9 cut(s) 516, 910, 1316, 1471, 1525, 1767, 2343, 2509, 2526
Van91I CCANNNNNTGG 2 cut(s) 855, 2174
VneI GTGCAC 1 cut(s) 2220
VpaK11BI GGWCC 2 cut(s) 836, 1580
XapI RAATTY 6 cut(s) 519, 621, 1169, 1405, 1846, 2163
XbaI TCTAGA 1 cut(s) 2104
XceI RCATGY 6 cut(s) 718, 2044, 2259, 2393, 2710, 2897
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XmiI GTMKAC 1 cut(s) 1811
XmnI GAANNNNTTC 2 cut(s) 2443, 2811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.