Rroxscaffold_2G00130080

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000058
Physical Location & Seq
Reverse (-)
66209414 .. 66219806
10393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130080.1

Sequence Viewer

Length: 2379 bp
ATGGGAGTGATTCCATCATGGTTTGGGTCCTTGTCGAAACTTCAAATATTCAGATTTTATGGTAATCAATTTTCCGGGTCCATCCCAGCTACAATATTCAACTTATCTGCTCTGCAAATAATTGATCTGGGTTATAACCGACTCTCAGGTCCTATACCATATGAGATTGGTTATCTTCCAAATTTAGAGAGATTGGGGCTCCATCAAAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATCTCCACAATAAAAGTATTAAATCTCGGCCTCAATCAGCTTTCAGGTAGCCTCCCAGCAAACATAGGCCTTGCGCTTCCAAAACTAGAAAATTTTGATGCAGCAGAGAATCGCTTCAGTGGAGTAATCCCCAAATCCATCTCCAATGCTTCTAAGCTTCAGATTCTAAACCTGGGCGAGAACTCTTTTTCAGGTAGAATATCCAGAGAAATTGGGAACCTAACAATGTTGAAGGAGATCTATCTTGATAGTAATAATTTTGAAGGTCCTATACCATATGAGATTGGTTATCTTCCAAATTTAGAGAAATTGTTGCTCGGTGGTAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATCTCCACAATAAAAGTATTAGATCTCGGCCTCAATCAGCTTTCAGGTAGCCTCCCAGCAGACATAGGCCTTGGGCTTCCAAACGTAGAACAATTATTAGTAGGAGCGAATCACCTCAGTGGAGTAATCCCCAAATCCATCTCCAATTCTTCTGAGCTTCGGCATCTAGACCTGAAAGGTGACTCTTTTTCTGGATTTATTCCAACCACTCTGTGCCTCTTGACAAACCTTGAATTGCTCGGATTGGCCAAGAATAATTTGACCATTGATGCCTCTACTCCAGAAGTTAATATTTTTTCTTGTCTGCCAAATCTTAGAAATTTGAGGGTTTTCTCCTTCGAAATCAATCCATTAAATGCGAAGCTTTCGATTTCCTTCAGTAATTTCTCTGCATCACTTCAAAATGTTTATTTACGAAATTGCAGCTTGAGAGGTAACATCCCCAGTGATATTGGGAATTTGAGTAGCTTGATAATGTTAAGCCTGGGAGACAATCAATTGAGCGGGCCAATTCCAAGCTCAATGGGAAGACTACATAATCTTCAACGTTTGGGTATGTTTGATAACACATTGCAAGGATACATTCCAGATGAACTTTGTCAACTAGAACACTTAAATGCTTTGTCTTTGCGTGGGAATCAACTCTCTGGTTCTGTACCTTCCTGCTTGGGTAATCTAACAGCATCTCTTAGATATCTATACTTAGCCTCTAATTTGTTGAATTCCACAATCCCATCTTCCTTGTGGGGACTTGCAGATATCTTGGAACTAGACTTGTCATCCAATTCTCTAATTGGACCTCTATCAGGTGCTGTTGGTAATTTGAAAGTTGCTACATACATAAATGTATCATACAACCAATTATCTGGGAGTGTACCAAGTAGCATTGGGAGTTTAGTGAGTTTGGTCACTCTCTCCTTAGCACATAACAATCTAGAAGGCCCTATTCCTAGTTCCTTTGCTACCTGCTTAAGCTTAGAACTGTTGGATTTATCTCGAAATAGTTTCACTGGAGTGATTCCAAAGTCTCTAGAAGCACTCTCATATCTCAAGCATCTGAATTTGTCTTTCAACAGACTCCAAGGAGAAATTCCAAGTGGCGGTCCGTTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCATGGACTCTGTGGTGGATCCCAATTTCATGTTCCACCATGCAAAAGAAAAACTAGCATATCTATCTTGAAGTATGTTATTCCGGGGATCTTTTCAGCAATGCTTCTAGCGGCCTCCATATTTTGGATGTTGATGTTACGCAGAAAAAAGAATGCAACAGCTGCAGCGCGTACTATCTTGACACCTCAAGTTTTCTGGAGAAGAGTTTCATACCTAGAGCTCCTACGTGCGACAGATGGATTCAATGAAAGCAACTTACTTGGTACTGGGGGTTTTGGCTCAGTATATAAAGGAACATTGTCAGATGGGATAGACGTTGCGATAAAGGTTTTCAGTTTGGAGTTAGAAGGGGCATTTACAAGTTTTGAGGTTGAATGTGAAGTGCTAAATGCGATAGTTGAAGTTGTGGATGCTAGTTTACTTGGAAGCGAGGAGGCTCATGACTTCGTGAGCAAGAGGGAGTGCTTATCATCCATTATGAGATTAGCTGTTGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAAGAGGCTGTAGCCATGCTCAAAACAATCAAGATCAAGTTTTCAAAGGACTCTGCTGCAAGAGGTGTGGTGGTGAACCATCGTCCTGTTTCGTAA

Protein Analysis

792

Amino Acids

85.49

Weight (kDa)

6.69

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 296 - 463 1.8e-09 Leucine-rich repeat region
LRR_8 PF13855 520 - 563 6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AasI GACNNNNNNGTC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 1583
AccB7I CCANNNNNTGG 1 cut(s) 1875
AccBSI CCGCTC 1 cut(s) 1113
AccII CGCG 1 cut(s) 1921
AciI CCGC 3 cut(s) 1113, 1710, 1862
AclI AACGTT 1 cut(s) 1156
AclWI GGATC 3 cut(s) 1764, 1777, 1847
AcoI YGGCCR 3 cut(s) 220, 583, 855
AcsI RAATTY 8 cut(s) 181, 337, 544, 928, 1066, 1330, 1669, 1698
AcuI CTGAAG 3 cut(s) 346, 389, 970
AdeI CACNNNGTG 1 cut(s) 822
AfaI GTAC 4 cut(s) 1266, 1485, 1924, 2017
AfiI CCNNNNNNNGG 3 cut(s) 1415, 1709, 1875
AflII CTTAAG 1 cut(s) 1579
AjnI CCWGG 2 cut(s) 417, 1092
AjuI GAANNNNNNNTTGG 4 cut(s) 1683, 1715, 1767, 1799
AleI CACNNNNGTG 2 cut(s) 726, 1622
Alw21I GWGCWC 1 cut(s) 1974
Alw26I GTCTC 2 cut(s) 1092, 1641
AlwI GGATC 3 cut(s) 1764, 1777, 1847
AlwNI CAGNNNCTG 1 cut(s) 1421
ApeKI GCWGC 5 cut(s) 347, 1032, 1913, 1916, 2339
ApoI RAATTY 8 cut(s) 181, 337, 544, 928, 1066, 1330, 1669, 1698
Asp700I GAANNNNTTC 2 cut(s) 359, 1957
AspLEI GCGC 2 cut(s) 322, 1921
AspS9I GGNCC 8 cut(s) 27, 78, 149, 512, 1115, 1406, 1550, 1712
AsuC2I CCSGG 2 cut(s) 76, 1836
AsuHPI GGTGA 4 cut(s) 713, 800, 2253, 2368
AsuII TTCGAA 1 cut(s) 948
AvaII GGWCC 6 cut(s) 27, 78, 149, 512, 1406, 1712
BalI TGGCCA 3 cut(s) 222, 585, 857
BamHI GGATCC 1 cut(s) 1769
BanII GRGCYC 2 cut(s) 201, 1974
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BbsI GAAGAC 1 cut(s) 1144
Bbv12I GWGCWC 1 cut(s) 1974
BbvI GCAGC 5 cut(s) 359, 1044, 1900, 1928, 2326
BciT130I CCWGG 2 cut(s) 419, 1094
BciVI GTATCC 1 cut(s) 1181
BcnI CCSGG 2 cut(s) 76, 1836
BcoDI GTCTC 2 cut(s) 1092, 1641
BfmI CTRYAG 2 cut(s) 1914, 2292
BfrI CTTAAG 1 cut(s) 1579
BfuAI ACCTGC 1 cut(s) 1583
BfuI GTATCC 1 cut(s) 1181
BglII AGATCT 2 cut(s) 483, 631
BisI GCNGC 6 cut(s) 348, 1033, 1863, 1914, 1917, 2340
BlsI GCNGC 6 cut(s) 349, 1034, 1864, 1915, 1918, 2341
Bme1390I CCNGG 4 cut(s) 76, 419, 1094, 1836
Bme18I GGWCC 6 cut(s) 27, 78, 149, 512, 1406, 1712
BmgT120I GGNCC 8 cut(s) 27, 78, 149, 512, 1115, 1406, 1550, 1712
BmiI GGNNCC 5 cut(s) 28, 79, 200, 464, 1771
BmrFI CCNGG 4 cut(s) 76, 419, 1094, 1836
BmrI ACTGGG 2 cut(s) 1047, 2028
BmsI GCATC 7 cut(s) 334, 781, 868, 1010, 1301, 1672, 2152
BmuI ACTGGG 2 cut(s) 1047, 2028
BpiI GAAGAC 1 cut(s) 1144
BpmI CTGGAG 3 cut(s) 873, 1641, 1969
Bpu10I CCTNAGC 1 cut(s) 1528
Bpu14I TTCGAA 1 cut(s) 948
BpuEI CTTGAG 3 cut(s) 1057, 1643, 1923
BpuMI CCSGG 2 cut(s) 76, 1836
BsaAI YACGTR 1 cut(s) 1979
BsaJI CCNNGG 6 cut(s) 418, 679, 1093, 1690, 1753, 1835
BsaWI WCCGGW 1 cut(s) 2263
Bsc4I CCNNNNNNNGG 3 cut(s) 1415, 1709, 1875
Bse1I ACTGG 3 cut(s) 1053, 1624, 2023
Bse3DI GCAATG 2 cut(s) 1178, 1857
BseBI CCWGG 2 cut(s) 419, 1094
BseDI CCNNGG 6 cut(s) 418, 679, 1093, 1690, 1753, 1835
BseGI GGATG 8 cut(s) 81, 230, 593, 1047, 1388, 1884, 2167, 2222
BseLI CCNNNNNNNGG 3 cut(s) 1415, 1709, 1875
BseMI GCAATG 2 cut(s) 1178, 1857
BseMII CTCAG 4 cut(s) 159, 739, 753, 2046
BseNI ACTGG 3 cut(s) 1053, 1624, 2023
BseRI GAGGAG 1 cut(s) 2198
BseXI GCAGC 5 cut(s) 359, 1044, 1900, 1928, 2326
BseYI CCCAGC 3 cut(s) 85, 301, 664
Bsh1236I CGCG 1 cut(s) 1921
BsiHKAI GWGCWC 1 cut(s) 1974
BsiSI CCGG 3 cut(s) 75, 1835, 2264
BslFI GGGAC 1 cut(s) 1371
BslI CCNNNNNNNGG 3 cut(s) 1415, 1709, 1875
BsmAI GTCTC 2 cut(s) 1092, 1641
BsmFI GGGAC 1 cut(s) 1371
BsmI GAATGC 1 cut(s) 1909
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 2 cut(s) 201, 1974
Bsp143I GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
Bsp19I CCATGG 1 cut(s) 1753
BspACI CCGC 3 cut(s) 1113, 1710, 1862
BspCNI CTCAG 4 cut(s) 158, 738, 754, 2045
BspFNI CGCG 1 cut(s) 1921
BspHI TCATGA 1 cut(s) 2191
BspLI GGNNCC 5 cut(s) 28, 79, 200, 464, 1771
BspMAI CTGCAG 1 cut(s) 1918
BspMI ACCTGC 1 cut(s) 1583
BspPI GGATC 3 cut(s) 1764, 1777, 1847
BspT104I TTCGAA 1 cut(s) 948
BspTI CTTAAG 1 cut(s) 1579
BsrBI CCGCTC 1 cut(s) 1113
BsrDI GCAATG 2 cut(s) 1178, 1857
BsrI ACTGG 3 cut(s) 1053, 1624, 2023
BssECI CCNNGG 6 cut(s) 418, 679, 1093, 1690, 1753, 1835
BssMI GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
BssT1I CCWWGG 3 cut(s) 679, 1690, 1753
Bst2UI CCWGG 2 cut(s) 419, 1094
Bst4CI ACNGT 1 cut(s) 1593
Bst6I CTCTTC 2 cut(s) 1948, 2262
BstAFI CTTAAG 1 cut(s) 1579
BstAPI GCANNNNNTGC 1 cut(s) 1913
BstBAI YACGTR 1 cut(s) 1979
BstBI TTCGAA 1 cut(s) 948
BstC8I GCNNGC 1 cut(s) 1115
BstDSI CCRYGG 1 cut(s) 1753
BstENI CCTNNNNNAGG 1 cut(s) 1413
BstF5I GGATG 8 cut(s) 81, 230, 593, 1047, 1388, 1884, 2167, 2222
BstFNI CGCG 1 cut(s) 1921
BstHHI GCGC 2 cut(s) 322, 1921
BstKTI GATC 6 cut(s) 127, 486, 634, 1772, 1842, 2319
BstMAI GTCTC 2 cut(s) 1092, 1641
BstMBI GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
BstMWI GCNNNNNNNGC 2 cut(s) 1913, 2252
BstNI CCWGG 2 cut(s) 419, 1094
BstNSI RCATGY 1 cut(s) 2284
BstSCI CCNGG 4 cut(s) 74, 417, 1092, 1834
BstSFI CTRYAG 2 cut(s) 1914, 2292
BstUI CGCG 1 cut(s) 1921
BstV1I GCAGC 5 cut(s) 359, 1044, 1900, 1928, 2326
BstV2I GAAGAC 1 cut(s) 1144
BstX2I RGATCY 4 cut(s) 483, 631, 1769, 1839
BstXI CCANNNNNNTGG 1 cut(s) 1475
BstYI RGATCY 4 cut(s) 483, 631, 1769, 1839
BsuI GTATCC 1 cut(s) 1181
BtgI CCRYGG 1 cut(s) 1753
BtsCI GGATG 8 cut(s) 81, 230, 593, 1047, 1388, 1884, 2167, 2222
BtsIMutI CAGTG 4 cut(s) 370, 733, 1060, 1617
BveI ACCTGC 1 cut(s) 1583
Cac8I GCNNGC 1 cut(s) 1115
CaiI CAGNNNCTG 1 cut(s) 1421
CciI TCATGA 1 cut(s) 2191
CfoI GCGC 2 cut(s) 322, 1921
Cfr13I GGNCC 8 cut(s) 27, 78, 149, 512, 1115, 1406, 1550, 1712
CpoI CGGWCCG 1 cut(s) 1712
Csp6I GTAC 4 cut(s) 1265, 1484, 1923, 2016
CspCI CAANNNNNGTGG 2 cut(s) 2331, 2366
CspI CGGWCCG 1 cut(s) 1712
CviAII CATG 7 cut(s) 18, 1754, 1781, 1791, 2192, 2281, 2299
CviQI GTAC 4 cut(s) 1265, 1484, 1923, 2016
DpnI GATC 6 cut(s) 126, 485, 633, 1771, 1841, 2318
DpnII GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
DraIII CACNNNGTG 1 cut(s) 822
DrdI GACNNNNNNGTC 1 cut(s) 147
DseDI GACNNNNNNGTC 1 cut(s) 147
EaeI YGGCCR 3 cut(s) 220, 583, 855
Eam1104I CTCTTC 2 cut(s) 1948, 2262
EarI CTCTTC 2 cut(s) 1948, 2262
Ecl136II GAGCTC 1 cut(s) 1972
Eco130I CCWWGG 3 cut(s) 679, 1690, 1753
Eco147I AGGCCT 2 cut(s) 315, 678
Eco24I GRGCYC 2 cut(s) 201, 1974
Eco32I GATATC 2 cut(s) 1304, 1369
Eco47I GGWCC 6 cut(s) 27, 78, 149, 512, 1406, 1712
Eco53kI GAGCTC 1 cut(s) 1972
Eco57I CTGAAG 3 cut(s) 346, 389, 970
EcoICRI GAGCTC 1 cut(s) 1972
EcoNI CCTNNNNNAGG 1 cut(s) 1413
EcoO109I RGGNCCY 4 cut(s) 27, 149, 512, 1550
EcoRI GAATTC 1 cut(s) 1330
EcoRII CCWGG 2 cut(s) 417, 1092
EcoRV GATATC 2 cut(s) 1304, 1369
EcoT14I CCWWGG 3 cut(s) 679, 1690, 1753
EcoT38I GRGCYC 2 cut(s) 201, 1974
ErhI CCWWGG 3 cut(s) 679, 1690, 1753
FaeI CATG 7 cut(s) 21, 1757, 1784, 1794, 2195, 2284, 2302
FaqI GGGAC 1 cut(s) 1371
FatI CATG 7 cut(s) 17, 1753, 1780, 1790, 2191, 2280, 2298
FauI CCCGC 1 cut(s) 1106
FauNDI CATATG 2 cut(s) 160, 523
Fnu4HI GCNGC 6 cut(s) 348, 1033, 1863, 1914, 1917, 2340
FokI GGATG 8 cut(s) 68, 217, 580, 1034, 1375, 1891, 2174, 2209
FriOI GRGCYC 2 cut(s) 201, 1974
Fsp4HI GCNGC 6 cut(s) 348, 1033, 1863, 1914, 1917, 2340
GlaI GCGC 2 cut(s) 321, 1920
GluI GCNGC 6 cut(s) 348, 1033, 1863, 1914, 1917, 2340
GsaI CCCAGC 3 cut(s) 89, 305, 668
GsuI CTGGAG 3 cut(s) 873, 1641, 1969
HapII CCGG 3 cut(s) 75, 1835, 2264
HhaI GCGC 2 cut(s) 322, 1921
Hin1II CATG 7 cut(s) 21, 1757, 1784, 1794, 2195, 2284, 2302
Hin6I GCGC 2 cut(s) 320, 1919
HinP1I GCGC 2 cut(s) 320, 1919
HincII GTYRAC 1 cut(s) 1211
HindII GTYRAC 1 cut(s) 1211
HindIII AAGCTT 3 cut(s) 401, 971, 1582
HpaII CCGG 3 cut(s) 75, 1835, 2264
HphI GGTGA 4 cut(s) 713, 800, 2253, 2368
Hpy166II GTNNAC 4 cut(s) 1211, 1484, 2171, 2359
Hpy188I TCNGA 6 cut(s) 53, 408, 763, 851, 1668, 2056
Hpy8I GTNNAC 4 cut(s) 1211, 1484, 2171, 2359
HpyAV CCTTC 7 cut(s) 472, 503, 955, 994, 1278, 1541, 2093
HpyCH4III ACNGT 1 cut(s) 1593
HpyCH4IV ACGT 4 cut(s) 693, 1156, 1978, 2067
HpyF10VI GCNNNNNNNGC 2 cut(s) 1913, 2252
HpySE526I ACGT 4 cut(s) 693, 1156, 1978, 2067
Hsp92II CATG 7 cut(s) 21, 1757, 1784, 1794, 2195, 2284, 2302
HspAI GCGC 2 cut(s) 320, 1919
Kzo9I GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
LmnI GCTCC 3 cut(s) 204, 713, 1977
Lsp1109I GCAGC 5 cut(s) 359, 1044, 1900, 1928, 2326
LweI GCATC 7 cut(s) 334, 781, 868, 1010, 1301, 1672, 2152
MaeII ACGT 4 cut(s) 693, 1156, 1978, 2067
MaeIII GTNAC 4 cut(s) 788, 1043, 1516, 1887
MalI GATC 6 cut(s) 126, 485, 633, 1771, 1841, 2318
MbiI CCGCTC 1 cut(s) 1113
MboI GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
MfeI CAATTG 1 cut(s) 1106
MflI RGATCY 4 cut(s) 483, 631, 1769, 1839
MhlI GDGCHC 2 cut(s) 201, 1974
MlsI TGGCCA 3 cut(s) 222, 585, 857
MluNI TGGCCA 3 cut(s) 222, 585, 857
MlyI GAGTC 5 cut(s) 135, 785, 1680, 1752, 2327
MmeI TCCRAC 2 cut(s) 836, 1575
Mox20I TGGCCA 3 cut(s) 222, 585, 857
MroXI GAANNNNTTC 2 cut(s) 359, 1957
MscI TGGCCA 3 cut(s) 222, 585, 857
MseI TTAA 6 cut(s) 266, 897, 962, 1088, 1223, 1580
MslI CAYNNNNRTG 3 cut(s) 726, 1224, 1622
Msp20I TGGCCA 3 cut(s) 222, 585, 857
MspA1I CMGCKG 1 cut(s) 1913
MspCI CTTAAG 1 cut(s) 1579
MspI CCGG 3 cut(s) 75, 1835, 2264
MspR9I CCNGG 4 cut(s) 76, 419, 1094, 1836
MunI CAATTG 1 cut(s) 1106
Mva1269I GAATGC 1 cut(s) 1909
MvaI CCWGG 2 cut(s) 419, 1094
MvnI CGCG 1 cut(s) 1921
MwoI GCNNNNNNNGC 2 cut(s) 1913, 2252
NciI CCSGG 2 cut(s) 76, 1836
NcoI CCATGG 1 cut(s) 1753
NdeI CATATG 2 cut(s) 160, 523
NdeII GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
NlaIII CATG 7 cut(s) 21, 1757, 1784, 1794, 2195, 2284, 2302
NlaIV GGNNCC 5 cut(s) 28, 79, 200, 464, 1771
NmeAIII GCCGAG 2 cut(s) 252, 615
NmuCI GTSAC 2 cut(s) 788, 1516
NspI RCATGY 1 cut(s) 2284
NspV TTCGAA 1 cut(s) 948
OliI CACNNNNGTG 2 cut(s) 726, 1622
PagI TCATGA 1 cut(s) 2191
PceI AGGCCT 2 cut(s) 315, 678
PctI GAATGC 1 cut(s) 1909
PdmI GAANNNNTTC 2 cut(s) 359, 1957
PfeI GAWTC 9 cut(s) 10, 355, 409, 718, 1246, 1627, 1736, 1992, 2258
PflMI CCANNNNNTGG 1 cut(s) 1875
PkrI GCNGC 6 cut(s) 349, 1034, 1864, 1915, 1918, 2341
PleI GAGTC 5 cut(s) 135, 785, 1680, 1752, 2327
PpsI GAGTC 5 cut(s) 135, 785, 1680, 1752, 2327
Ppu21I YACGTR 1 cut(s) 1979
PpuMI RGGWCCY 3 cut(s) 27, 149, 512
PsiI TTATAA 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 1974
Psp1406I AACGTT 1 cut(s) 1156
Psp5II RGGWCCY 3 cut(s) 27, 149, 512
Psp6I CCWGG 2 cut(s) 417, 1092
PspFI CCCAGC 3 cut(s) 85, 301, 664
PspGI CCWGG 2 cut(s) 417, 1092
PspN4I GGNNCC 5 cut(s) 28, 79, 200, 464, 1771
PspPI GGNCC 8 cut(s) 27, 78, 149, 512, 1115, 1406, 1550, 1712
PspPPI RGGWCCY 3 cut(s) 27, 149, 512
PstI CTGCAG 1 cut(s) 1918
PstNI CAGNNNCTG 1 cut(s) 1421
PsuI RGATCY 4 cut(s) 483, 631, 1769, 1839
PvuII CAGCTG 1 cut(s) 1913
RsaI GTAC 4 cut(s) 1266, 1485, 1924, 2017
RsaNI GTAC 4 cut(s) 1265, 1484, 1923, 2016
RseI CAYNNNNRTG 3 cut(s) 726, 1224, 1622
Rsr2I CGGWCCG 1 cut(s) 1712
RsrII CGGWCCG 1 cut(s) 1712
SacI GAGCTC 1 cut(s) 1974
SaqAI TTAA 6 cut(s) 266, 897, 962, 1088, 1223, 1580
SatI GCNGC 6 cut(s) 348, 1033, 1863, 1914, 1917, 2340
Sau3AI GATC 6 cut(s) 124, 483, 631, 1769, 1839, 2316
Sau96I GGNCC 8 cut(s) 27, 78, 149, 512, 1115, 1406, 1550, 1712
SchI GAGTC 5 cut(s) 135, 785, 1680, 1752, 2327
ScrFI CCNGG 4 cut(s) 76, 419, 1094, 1836
SduI GDGCHC 2 cut(s) 201, 1974
SfaNI GCATC 7 cut(s) 334, 781, 868, 1010, 1301, 1672, 2152
SfcI CTRYAG 2 cut(s) 1914, 2292
SfuI TTCGAA 1 cut(s) 948
SinI GGWCC 6 cut(s) 27, 78, 149, 512, 1406, 1712
SmiMI CAYNNNNRTG 3 cut(s) 726, 1224, 1622
SmlI CTYRAG 4 cut(s) 1036, 1579, 1658, 1938
SmoI CTYRAG 4 cut(s) 1036, 1579, 1658, 1938
SseBI AGGCCT 2 cut(s) 315, 678
SsiI CCGC 3 cut(s) 1113, 1710, 1862
SspI AATATT 3 cut(s) 48, 96, 901
SstI GAGCTC 1 cut(s) 1974
StuI AGGCCT 2 cut(s) 315, 678
StyD4I CCNGG 4 cut(s) 74, 417, 1092, 1834
StyI CCWWGG 3 cut(s) 679, 1690, 1753
TaaI ACNGT 1 cut(s) 1593
TaiI ACGT 4 cut(s) 696, 1159, 1981, 2070
TaqI TCGA 4 cut(s) 35, 948, 977, 1606
TauI GCSGC 1 cut(s) 1865
TfiI GAWTC 9 cut(s) 10, 355, 409, 718, 1246, 1627, 1736, 1992, 2258
Tru1I TTAA 6 cut(s) 266, 897, 962, 1088, 1223, 1580
Tru9I TTAA 6 cut(s) 266, 897, 962, 1088, 1223, 1580
TscAI CASTG 4 cut(s) 370, 733, 1060, 1624
TseFI GTSAC 2 cut(s) 788, 1516
TseI GCWGC 5 cut(s) 347, 1032, 1913, 1916, 2339
Tsp45I GTSAC 2 cut(s) 788, 1516
TspDTI ATGAA 4 cut(s) 1215, 1769, 1950, 2013
TspGWI ACGGA 1 cut(s) 1704
TspRI CASTG 4 cut(s) 370, 733, 1060, 1624
Van91I CCANNNNNTGG 1 cut(s) 1875
Vha464I CTTAAG 1 cut(s) 1579
VpaK11BI GGWCC 6 cut(s) 27, 78, 149, 512, 1406, 1712
XagI CCTNNNNNAGG 1 cut(s) 1413
XapI RAATTY 8 cut(s) 181, 337, 544, 928, 1066, 1330, 1669, 1698
XbaI TCTAGA 3 cut(s) 775, 1543, 1639
XceI RCATGY 1 cut(s) 2284
XcmI CCANNNNNNNNNTGG 2 cut(s) 1350, 1760
XmnI GAANNNNTTC 2 cut(s) 359, 1957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.