RchiOBHm_Chr5g0011271

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
7468515 .. 7472849
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29196

Sequence Viewer

Length: 2340 bp
ATGGTAACCAACAGACTGGGTGAATTACTGAGTGAATTACCTTCTTGCTTGGGAAATTTAACCAGAGCTCTTAGATCTCTATCTTTAAGGTTCAATTTGTTGAATTCCACAATACCATCTACCTTGTGGGGACTGACTGATATCTTGAATTTAGACTTGTCATCCAATTCTCTAATTGGACCTCTCTCAGATCGCATTGGTAATTTGAAGGTTGTGCAAGCTATATATTTAACAAACAACCGTTTATCCTGTAGTATACCAAGCACCATTGGGGGTCTCCAAGCATTGGATTTCCTCTCCCTGGCAAATAATGGTTTTGAAGGACAAATTCCTATCTCATTTGGGGACTCGCTAAGCCTGGCGCGCTTGGATTTATCCAACAACTATCTGTCAGGAATAATTCCAAAGTCTCTCGAAGCCCTCTCTTATCTCCAGTATCTAAATCTGTCTTTCAACAGACTCCAAGGAGAAATTCCTACTGGTGGAACTTTCCAGAACCTCTCTGATCAATCATTTTTATCAAATGGAGGACTATGTGGTGCACCACGGTTTCATGTTCCACCATGCAAAAGGAAAGGTGAAAGATTTATCCTCCTGCGGTTGAAATATATTATTCCCGGGATCATGTCAGTACTAGTAATCCTAGTGTCCCTTGTATTGATTTTGATCATATGTAGAAAAAGAAAGGTAGAAGCTGCAAGCGAGACTACCTTGTTACCTCATCTTCAAGAGACTAACTTTTTACCTCAACTTCAATGGAGAAGAGTATCATACCAAGAACTTCTAAGTGCAACCAAACGGTTCAATGAATGCAACTTACTTGGCACTGGGGCTTTTGGCACAGTGTATAGAGGAACACTTTCAGATGGGATAAATGTTGCCATCAAGGTTTTTAAGTTGGAGTTAGAAAGGGCATTTAAGAGTTTTGAGCTTGAATGTGAAGTCCTAAGCAACATTTGTCACCGAAATCTTATCAGAGTCATCAGTTGCTGCAGTCAAATTGATTTCAAGGCAATTGTATTGAATTACATGCCTAATGGGAGCCTCGAGAAGTGGTTGTACTCTCCCAACTTTTCTTTGAACATCCTGCAGAGGTTAAACATAATGATAGATGTTGCATCGGCAGTGCAGTACCTTCATCATGGTTATGAAACACCTATTGTCCATTGCGATTTGAAGCCAAGCAATATACTACTAGATGATGATATGGTGGCATATGTTTCTGATTTTGGCATTGCAAAAGTCTTGGGTGGAGAAGATTCCATGACTCAAACCCTGACCTTAGCCACAATTGGATATATGGCTCCAGAGTATGGACTGGAAGGAATTGTCACTAGAAGAGGGGATGTGTACAGTTTTGGTATTCTGCTTTTGGAAACATTCACAAACAGGAAACCAACAGATGAGATGTTTGATGGGGAGATGAGTCTAAAGCAGTGGGTTGAAAATGCACTATTAGCAGATGCAATAGTTGAAGTGGTTGATACCAGTTTACTTGGGATTGAGGAAGATCATGCTTTTGTGAGCAAGAGGGAGTGTCTATCAGCCATTATGAGATTAGCTCTTGCTTGTTGTGCAGAATCACCAGAAGAGAGGATAAATATGCATATTTCTCTAGCCACTTTGGACAAAGTTAAGATCAAGTTTTTGATGGATGCCACAGGAGGTGTGGTGATGAACCATCGTCTTGTACGTAGAGGAGACACCGTGACTAAAACCATGACCCTAGCCACAACTGGGTATATTGCTCCAGCACAAACCAACTTGACGACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCTAATGTCACTAGTGACCCTCAAGACTTGTTGTCCAACTGGTCTACCAATACCTCCGCTTGCAACTGGGTTGGGGTTACTTGTGGTCATGTCCATCTTAGAGTCGCTGCCTTGAATCTCTCTTATTTTGGCCTCACAGGTAGAATTCCTCCGGAGCTAGGAAACCTTTCATTTCTTGTTGTGCTACGCTTGAGAAACAACAGTTTTAATGGCACTTTGCCTGTGGAATTGGCTGGTTTGCGCCGATTGAAGTTGGTTAACTTCAAATACAATAACTTTATGGGGGAGATTCCATCATGGTTTGGGTCCTTATCCAGTCTTAAAGCCTTGAATTTGTATGGGAATCGGTTCACAGGATCCATACCTGCTGCTATCTTCAACTTATCTGCTCTGCAAGTATTTGATCTGAGAAATAACCAGCTATCAGGTATGCACCAACAAGCAGTTAGCTATCTGCAAGTAGTCCTGGTGATCATCTATAGGGCCTGTTTGATTATGTTTATATTTTTTACTTTTTTTAAGGCTGTGATTACTGATTAA

Protein Analysis

779

Amino Acids

86.3

Weight (kDa)

7.81

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 113 - 154 5.8e-07 Leucine rich repeat
Pkinase PF00069 270 - 536 1.7e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 272 - 536 1.4e-41 Protein tyrosine and serine/threonine kinase
LRRNT_2 PF08263 591 - 628 1.5e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 631 - 741 1.1e-08 Leucine-rich repeat region
LRR_8 PF13855 698 - 741 1.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1777
Acc36I ACCTGC 1 cut(s) 2173
AccB7I CCANNNNNTGG 2 cut(s) 286, 1313
AccI GTMKAC 2 cut(s) 256, 1844
AccII CGCG 1 cut(s) 364
AccIII TCCGGA 1 cut(s) 1951
AciI CCGC 2 cut(s) 598, 1857
AclWI GGATC 3 cut(s) 629, 2151, 2164
AcsI RAATTY 7 cut(s) 55, 103, 148, 327, 471, 1944, 2131
AfaI GTAC 5 cut(s) 633, 1061, 1133, 1352, 1692
AfiI CCNNNNNNNGG 6 cut(s) 286, 301, 482, 1313, 1737, 1958
AhdI GACNNNNNGTC 1 cut(s) 1831
AhlI ACTAGT 2 cut(s) 634, 1811
AjnI CCWGG 3 cut(s) 300, 357, 2265
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 9 cut(s) 68, 221, 695, 931, 1562, 1802, 1957, 2221, 2250
AluI AGCT 9 cut(s) 68, 221, 695, 931, 1562, 1802, 1957, 2221, 2250
Alw21I GWGCWC 2 cut(s) 70, 544
Alw26I GTCTC 5 cut(s) 281, 414, 698, 725, 1695
Alw44I GTGCAC 1 cut(s) 540
AlwI GGATC 3 cut(s) 629, 2151, 2164
AlwNI CAGNNNCTG 1 cut(s) 990
Ama87I CYCGRG 2 cut(s) 617, 1046
Aor13HI TCCGGA 1 cut(s) 1951
AoxI GGCC 2 cut(s) 1930, 2283
ApaLI GTGCAC 1 cut(s) 540
ApeKI GCWGC 4 cut(s) 695, 990, 1907, 2168
ApoI RAATTY 7 cut(s) 55, 103, 148, 327, 471, 1944, 2131
ArsI GACNNNNNNTTYG 2 cut(s) 1791, 1823
Asp700I GAANNNNTTC 3 cut(s) 859, 1966, 2147
AspLEI GCGC 3 cut(s) 364, 366, 2043
AspS9I GGNCC 3 cut(s) 179, 2106, 2283
AsuC2I CCSGG 2 cut(s) 618, 619
AsuHPI GGTGA 6 cut(s) 32, 590, 953, 1575, 1684, 2281
AvaI CYCGRG 2 cut(s) 617, 1046
AvaII GGWCC 2 cut(s) 179, 2106
BaeGI GKGCMC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 2156
BanII GRGCYC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 1043, 1075
Bbv12I GWGCWC 2 cut(s) 70, 544
BbvI GCAGC 4 cut(s) 682, 977, 1894, 2155
BccI CCATC 8 cut(s) 124, 860, 890, 1409, 1645, 1689, 1902, 2101
BciT130I CCWGG 3 cut(s) 302, 359, 2267
BclI TGATCA 3 cut(s) 505, 666, 2271
BcnI CCSGG 2 cut(s) 618, 619
BcoDI GTCTC 5 cut(s) 281, 414, 698, 725, 1695
BcuI ACTAGT 2 cut(s) 634, 1811
BfaI CTAG 8 cut(s) 635, 644, 1196, 1335, 1616, 1727, 1812, 1958
BfmI CTRYAG 4 cut(s) 250, 991, 1088, 2278
BfuAI ACCTGC 1 cut(s) 2173
BglII AGATCT 1 cut(s) 74
BisI GCNGC 4 cut(s) 696, 991, 1908, 2169
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 4 cut(s) 697, 992, 1909, 2170
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 5 cut(s) 302, 359, 618, 619, 2267
Bme18I GGWCC 2 cut(s) 179, 2106
BmeRI GACNNNNNGTC 1 cut(s) 1831
BmeT110I CYCGRG 2 cut(s) 617, 1046
BmgT120I GGNCC 3 cut(s) 179, 2106, 2283
BmiI GGNNCC 4 cut(s) 1043, 1305, 2107, 2158
BmrFI CCNGG 5 cut(s) 302, 359, 618, 619, 2267
BmrI ACTGGG 4 cut(s) 26, 837, 1746, 1876
BmsI GCATC 3 cut(s) 1127, 1453, 1645
BmuI ACTGGG 4 cut(s) 26, 837, 1746, 1876
BplI GAGNNNNNCTC 2 cut(s) 1546, 1578
BpmI CTGGAG 3 cut(s) 416, 1290, 1734
Bpu10I CCTNAGC 2 cut(s) 947, 1282
Bpu1102I GCTNAGC 1 cut(s) 353
BpuEI CTTGAG 2 cut(s) 1806, 2011
BpuMI CCSGG 2 cut(s) 618, 619
BsaAI YACGTR 1 cut(s) 1694
BsaBI GATNNNNATC 2 cut(s) 79, 665
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 4 cut(s) 300, 463, 545, 617
BsaWI WCCGGW 1 cut(s) 1951
BsaXI ACNNNNNCTCC 4 cut(s) 1656, 1686, 1692, 1722
Bsc4I CCNNNNNNNGG 6 cut(s) 286, 301, 482, 1313, 1737, 1958
Bse3DI GCAATG 2 cut(s) 1165, 1233
Bse8I GATNNNNATC 2 cut(s) 79, 665
BseAI TCCGGA 1 cut(s) 1951
BseBI CCWGG 3 cut(s) 302, 359, 2267
BseDI CCNNGG 4 cut(s) 300, 463, 545, 617
BseGI GGATG 4 cut(s) 161, 1083, 1351, 1660
BseJI GATNNNNATC 2 cut(s) 79, 665
BseLI CCNNNNNNNGG 6 cut(s) 286, 301, 482, 1313, 1737, 1958
BseMI GCAATG 2 cut(s) 1165, 1233
BseMII CTCAG 3 cut(s) 20, 201, 2198
BsePI GCGCGC 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 1713
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 4 cut(s) 682, 977, 1894, 2155
BsgI GTGCAG 2 cut(s) 1148, 1596
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 1932, 2285
BsiHKAI GWGCWC 2 cut(s) 70, 544
BsiHKCI CYCGRG 2 cut(s) 617, 1046
BsiSI CCGG 2 cut(s) 618, 1952
BslFI GGGAC 3 cut(s) 144, 359, 634
BslI CCNNNNNNNGG 6 cut(s) 286, 301, 482, 1313, 1737, 1958
BsmAI GTCTC 5 cut(s) 281, 414, 698, 725, 1695
BsmFI GGGAC 3 cut(s) 144, 359, 634
BsmI GAATGC 1 cut(s) 815
BsnI GGCC 2 cut(s) 1932, 2285
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 2 cut(s) 617, 1046
Bsp1286I GDGCHC 2 cut(s) 70, 544
Bsp13I TCCGGA 1 cut(s) 1951
Bsp1407I TGTACA 1 cut(s) 1350
Bsp1720I GCTNAGC 1 cut(s) 353
BspACI CCGC 2 cut(s) 598, 1857
BspANI GGCC 2 cut(s) 1932, 2285
BspCNI CTCAG 3 cut(s) 21, 200, 2199
BspEI TCCGGA 1 cut(s) 1951
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 4 cut(s) 1043, 1305, 2107, 2158
BspMAI CTGCAG 2 cut(s) 995, 1092
BspMI ACCTGC 1 cut(s) 2173
BspPI GGATC 3 cut(s) 629, 2151, 2164
BspQI GCTCTTC 1 cut(s) 1791
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 1165, 1233
BsrGI TGTACA 1 cut(s) 1350
BssECI CCNNGG 4 cut(s) 300, 463, 545, 617
BssHII GCGCGC 1 cut(s) 362
BssNAI GTATAC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 463
Bst1107I GTATAC 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 302, 359, 2267
Bst4CI ACNGT 7 cut(s) 242, 549, 801, 844, 1355, 1708, 2003
Bst6I CTCTTC 4 cut(s) 757, 1333, 1584, 1791
BstAUI TGTACA 1 cut(s) 1350
BstBAI YACGTR 1 cut(s) 1694
BstC8I GCNNGC 4 cut(s) 219, 364, 700, 1861
BstDEI CTNAG 9 cut(s) 29, 71, 187, 353, 785, 947, 1282, 1898, 2207
BstDSI CCRYGG 1 cut(s) 545
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 4 cut(s) 161, 1083, 1351, 1660
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 3 cut(s) 364, 366, 2043
BstMAI GTCTC 5 cut(s) 281, 414, 698, 725, 1695
BstMWI GCNNNNNNNGC 5 cut(s) 363, 1457, 1574, 1790, 1799
BstNI CCWGG 3 cut(s) 302, 359, 2267
BstNSI RCATGY 1 cut(s) 1033
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 5 cut(s) 300, 357, 616, 617, 2265
BstSFI CTRYAG 4 cut(s) 250, 991, 1088, 2278
BstSLI GKGCMC 1 cut(s) 544
BstSNI TACGTA 1 cut(s) 1694
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 4 cut(s) 682, 977, 1894, 2155
BstX2I RGATCY 2 cut(s) 74, 2156
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 74, 2156
BstZ17I GTATAC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 1932, 2285
BtgI CCRYGG 1 cut(s) 545
BtsCI GGATG 4 cut(s) 161, 1083, 1351, 1660
BtsI GCAGTG 2 cut(s) 1131, 1442
BtsIMutI CAGTG 4 cut(s) 825, 849, 1131, 1442
BveI ACCTGC 1 cut(s) 2173
Cac8I GCNNGC 4 cut(s) 219, 364, 700, 1861
CaiI CAGNNNCTG 1 cut(s) 990
CfoI GCGC 3 cut(s) 364, 366, 2043
Cfr13I GGNCC 3 cut(s) 179, 2106, 2283
Cfr9I CCCGGG 1 cut(s) 617
Csp6I GTAC 5 cut(s) 632, 1060, 1132, 1351, 1691
CviQI GTAC 5 cut(s) 632, 1060, 1132, 1351, 1691
DdeI CTNAG 9 cut(s) 29, 71, 187, 353, 785, 947, 1282, 1898, 2207
DrdI GACNNNNNNGTC 1 cut(s) 1777
DriI GACNNNNNGTC 1 cut(s) 1831
DseDI GACNNNNNNGTC 1 cut(s) 1777
Eam1104I CTCTTC 4 cut(s) 757, 1333, 1584, 1791
Eam1105I GACNNNNNGTC 1 cut(s) 1831
EarI CTCTTC 4 cut(s) 757, 1333, 1584, 1791
Ecl136II GAGCTC 1 cut(s) 68
Eco105I TACGTA 1 cut(s) 1694
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 179, 2106
Eco53kI GAGCTC 1 cut(s) 68
Eco88I CYCGRG 2 cut(s) 617, 1046
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 68
EcoO109I RGGNCCY 2 cut(s) 2106, 2283
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 2 cut(s) 103, 1944
EcoRII CCWGG 3 cut(s) 300, 357, 2265
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 1608
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 463
FaqI GGGAC 3 cut(s) 144, 359, 634
FauNDI CATATG 2 cut(s) 671, 1216
FbaI TGATCA 3 cut(s) 505, 666, 2271
FblI GTMKAC 2 cut(s) 256, 1844
Fnu4HI GCNGC 4 cut(s) 696, 991, 1908, 2169
FokI GGATG 4 cut(s) 148, 1070, 1358, 1667
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 4 cut(s) 696, 991, 1908, 2169
FspBI CTAG 8 cut(s) 635, 644, 1196, 1335, 1616, 1727, 1812, 1958
GlaI GCGC 3 cut(s) 363, 365, 2042
GluI GCNGC 4 cut(s) 696, 991, 1908, 2169
GsuI CTGGAG 3 cut(s) 416, 1290, 1734
HaeIII GGCC 2 cut(s) 1932, 2285
HapII CCGG 2 cut(s) 618, 1952
HhaI GCGC 3 cut(s) 364, 366, 2043
Hin6I GCGC 3 cut(s) 362, 364, 2041
HinP1I GCGC 3 cut(s) 362, 364, 2041
HincII GTYRAC 1 cut(s) 2059
HindII GTYRAC 1 cut(s) 2059
HpaI GTTAAC 1 cut(s) 2059
HpaII CCGG 2 cut(s) 618, 1952
HphI GGTGA 6 cut(s) 32, 590, 953, 1575, 1684, 2281
Hpy166II GTNNAC 7 cut(s) 257, 542, 1351, 1493, 1845, 2059, 2151
Hpy188I TCNGA 6 cut(s) 190, 505, 865, 977, 1225, 2208
Hpy188III TCNNGA 9 cut(s) 145, 393, 413, 493, 728, 1048, 1307, 1823, 1952
Hpy8I GTNNAC 7 cut(s) 257, 542, 1351, 1493, 1845, 2059, 2151
HpyAV CCTTC 5 cut(s) 51, 202, 314, 1145, 1316
HpyCH4III ACNGT 7 cut(s) 242, 549, 801, 844, 1355, 1708, 2003
HpyCH4IV ACGT 1 cut(s) 1693
HpyF10VI GCNNNNNNNGC 5 cut(s) 363, 1457, 1574, 1790, 1799
HpyF3I CTNAG 9 cut(s) 29, 71, 187, 353, 785, 947, 1282, 1898, 2207
HpySE526I ACGT 1 cut(s) 1693
HspAI GCGC 3 cut(s) 362, 364, 2041
Kpn2I TCCGGA 1 cut(s) 1951
Ksp22I TGATCA 3 cut(s) 505, 666, 2271
KspAI GTTAAC 1 cut(s) 2059
LguI GCTCTTC 1 cut(s) 1791
LmnI GCTCC 4 cut(s) 1041, 1309, 1753, 1954
Lsp1109I GCAGC 4 cut(s) 682, 977, 1894, 2155
LweI GCATC 3 cut(s) 1127, 1453, 1645
MaeI CTAG 8 cut(s) 635, 644, 1196, 1335, 1616, 1727, 1812, 1958
MaeII ACGT 1 cut(s) 1693
MaeIII GTNAC 8 cut(s) 4, 714, 959, 1330, 1708, 1807, 1814, 1876
MboII GAAGA 8 cut(s) 716, 774, 1268, 1350, 1520, 1601, 1778, 2167
MfeI CAATTG 2 cut(s) 1014, 1290
MflI RGATCY 2 cut(s) 74, 2156
MhlI GDGCHC 2 cut(s) 70, 544
MlyI GAGTC 6 cut(s) 341, 453, 987, 1261, 1435, 1911
MmeI TCCRAC 3 cut(s) 402, 879, 1860
Mph1103I ATGCAT 1 cut(s) 1608
MroI TCCGGA 1 cut(s) 1951
MroXI GAANNNNTTC 3 cut(s) 859, 1966, 2147
MslI CAYNNNNRTG 1 cut(s) 1146
MspI CCGG 2 cut(s) 618, 1952
MspR9I CCNGG 5 cut(s) 302, 359, 618, 619, 2267
MunI CAATTG 2 cut(s) 1014, 1290
Mva1269I GAATGC 1 cut(s) 815
MvaI CCWGG 3 cut(s) 302, 359, 2267
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 5 cut(s) 363, 1457, 1574, 1790, 1799
NciI CCSGG 2 cut(s) 618, 619
NdeI CATATG 2 cut(s) 671, 1216
NlaIV GGNNCC 4 cut(s) 1043, 1305, 2107, 2158
NmuCI GTSAC 5 cut(s) 959, 1330, 1708, 1807, 1814
NsiI ATGCAT 1 cut(s) 1608
NspI RCATGY 1 cut(s) 1033
PaeR7I CTCGAG 1 cut(s) 1046
PauI GCGCGC 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 1791
PcsI WCGNNNNNNNCGW 1 cut(s) 1690
PctI GAATGC 1 cut(s) 815
PdmI GAANNNNTTC 3 cut(s) 859, 1966, 2147
PfeI GAWTC 5 cut(s) 1259, 1580, 1915, 2089, 2143
PflMI CCANNNNNTGG 2 cut(s) 286, 1313
PkrI GCNGC 4 cut(s) 697, 992, 1909, 2170
PleI GAGTC 6 cut(s) 341, 453, 986, 1261, 1434, 1910
PpsI GAGTC 6 cut(s) 341, 453, 986, 1261, 1434, 1910
Ppu21I YACGTR 1 cut(s) 1694
PpuMI RGGWCCY 1 cut(s) 2106
Psp124BI GAGCTC 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 2106
Psp6I CCWGG 3 cut(s) 300, 357, 2265
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 300, 357, 2265
PspN4I GGNNCC 4 cut(s) 1043, 1305, 2107, 2158
PspPI GGNCC 3 cut(s) 179, 2106, 2283
PspPPI RGGWCCY 1 cut(s) 2106
PstI CTGCAG 2 cut(s) 995, 1092
PstNI CAGNNNCTG 1 cut(s) 990
PsuI RGATCY 2 cut(s) 74, 2156
PteI GCGCGC 1 cut(s) 362
RsaI GTAC 5 cut(s) 633, 1061, 1133, 1352, 1692
RsaNI GTAC 5 cut(s) 632, 1060, 1132, 1351, 1691
RseI CAYNNNNRTG 1 cut(s) 1146
SacI GAGCTC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 1791
SatI GCNGC 4 cut(s) 696, 991, 1908, 2169
Sau96I GGNCC 3 cut(s) 179, 2106, 2283
ScaI AGTACT 1 cut(s) 633
SchI GAGTC 6 cut(s) 341, 453, 987, 1261, 1435, 1911
ScrFI CCNGG 5 cut(s) 302, 359, 618, 619, 2267
SduI GDGCHC 2 cut(s) 70, 544
SfaNI GCATC 3 cut(s) 1127, 1453, 1645
SfcI CTRYAG 4 cut(s) 250, 991, 1088, 2278
Sfr274I CTCGAG 1 cut(s) 1046
SinI GGWCC 2 cut(s) 179, 2106
SlaI CTCGAG 1 cut(s) 1046
SmaI CCCGGG 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 1146
SmlI CTYRAG 3 cut(s) 1046, 1821, 1990
SmoI CTYRAG 3 cut(s) 1046, 1821, 1990
SnaBI TACGTA 1 cut(s) 1694
SpeI ACTAGT 2 cut(s) 634, 1811
SsiI CCGC 2 cut(s) 598, 1857
SspMI CTAG 8 cut(s) 635, 644, 1196, 1335, 1616, 1727, 1812, 1958
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 5 cut(s) 300, 357, 616, 617, 2265
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 7 cut(s) 242, 549, 801, 844, 1355, 1708, 2003
TaiI ACGT 1 cut(s) 1696
TaqI TCGA 2 cut(s) 414, 1047
TatI WGTACW 3 cut(s) 631, 1059, 1350
TfiI GAWTC 5 cut(s) 1259, 1580, 1915, 2089, 2143
TscAI CASTG 4 cut(s) 832, 849, 1131, 1442
TseFI GTSAC 5 cut(s) 959, 1330, 1708, 1807, 1814
TseI GCWGC 4 cut(s) 695, 990, 1907, 2168
Tsp45I GTSAC 5 cut(s) 959, 1330, 1708, 1807, 1814
TspDTI ATGAA 6 cut(s) 542, 822, 1127, 1164, 1691, 1959
TspMI CCCGGG 1 cut(s) 617
TspRI CASTG 4 cut(s) 832, 849, 1131, 1442
Van91I CCANNNNNTGG 2 cut(s) 286, 1313
VneI GTGCAC 1 cut(s) 540
VpaK11BI GGWCC 2 cut(s) 179, 2106
XapI RAATTY 7 cut(s) 55, 103, 148, 327, 471, 1944, 2131
XceI RCATGY 1 cut(s) 1033
XcmI CCANNNNNNNNNTGG 2 cut(s) 123, 1666
XhoI CTCGAG 1 cut(s) 1046
XmaI CCCGGG 1 cut(s) 617
XmiI GTMKAC 2 cut(s) 256, 1844
XmnI GAANNNNTTC 3 cut(s) 859, 1966, 2147
XspI CTAG 8 cut(s) 635, 644, 1196, 1335, 1616, 1727, 1812, 1958
ZrmI AGTACT 1 cut(s) 633
Zsp2I ATGCAT 1 cut(s) 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.