Rmu_ssc0000400.1_g000092

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
Physical Location & Seq
Forward (+)
344997 .. 345861
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000092.1.cds

Sequence Viewer

Length: 669 bp
atgctaagcaacattcgccatcgaaatcttatcaaaatcatcagttgttgcagtcaaactgatttcaaagctgttgtggtaaactacatgcctaatgggagccttgacaaatggttgtattctcagaatttgtctttgaacatcctgcagaggctgaatataattatagatgttgcatcggcattggaataccttcatcatgattttggtattgctaaactcttaggtggaggagattctataacccacacaatgaccctagccacagttgggtatatggctccagagtatggaatagatggaatagtttccagaagaggagatgtgcacggttttggtattgtagtgatggaaacattcacaagaaggaagccaacagatacgatgtttgttggggaaatgagtttgaagcagtgggttgcaaattcacttccagatgaagtacttgaagtagtggatgccaacttacttggtacaaggaaagatggtgactttatgagccagaaggattgtttatcatctattatgagattagctctagcttgttctgcagactcaccagaggataggatcaatatgcaagatgctctggcaacactaaacaaaatcaaaataaagtttttgaaggcaacactaaaccgtcctgttgttcagcaccccattagttga

Protein Analysis

222

Amino Acids

24.67

Weight (kDa)

7.0

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 2 cut(s) 127, 424
AfaI GTAC 2 cut(s) 444, 475
AfiI CCNNNNNNNGG 2 cut(s) 270, 290
AgsI TTSAA 5 cut(s) 67, 139, 409, 449, 625
AluBI AGCT 3 cut(s) 71, 536, 542
AluI AGCT 3 cut(s) 71, 536, 542
Alw21I GWGCWC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 1 cut(s) 578
AlwNI CAGNNNCTG 1 cut(s) 154
ApaLI GTGCAC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 127, 424
Asp700I GAANNNNTTC 2 cut(s) 192, 307
AsuHPI GGTGA 2 cut(s) 500, 549
BaeGI GKGCMC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BccI CCATC 4 cut(s) 27, 293, 343, 479
BfaI CTAG 2 cut(s) 260, 539
BfmI CTRYAG 2 cut(s) 146, 549
BlpI GCTNAGC 1 cut(s) 5
BmcAI AGTACT 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 101, 282
BmsI GCATC 3 cut(s) 185, 448, 574
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 290
BseGI GGATG 2 cut(s) 141, 463
BseLI CCNNNNNNNGG 2 cut(s) 270, 290
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 246, 333
BseSI GKGCMC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 270, 290
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 570
Bsp1720I GCTNAGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 101, 282
BspMAI CTGCAG 2 cut(s) 150, 553
BspPI GGATC 1 cut(s) 578
BssMI GATC 1 cut(s) 570
Bst4CI ACNGT 3 cut(s) 268, 332, 641
Bst6I CTCTTC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 5, 123, 223
BstF5I GGATG 2 cut(s) 141, 463
BstKTI GATC 1 cut(s) 573
BstMBI GATC 1 cut(s) 570
BstMWI GCNNNNNNNGC 2 cut(s) 15, 548
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 2 cut(s) 146, 549
BstSLI GKGCMC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 141, 463
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
CaiI CAGNNNCTG 1 cut(s) 154
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 2 cut(s) 443, 474
CviAII CATG 2 cut(s) 88, 200
CviJI RGCY 9 cut(s) 71, 102, 154, 263, 281, 373, 501, 536, 542
CviKI_1 RGCY 9 cut(s) 71, 102, 154, 263, 281, 373, 501, 536, 542
CviQI GTAC 2 cut(s) 443, 474
DdeI CTNAG 3 cut(s) 5, 123, 223
DpnI GATC 1 cut(s) 572
DpnII GATC 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
FaeI CATG 2 cut(s) 91, 203
FatI CATG 2 cut(s) 87, 199
FokI GGATG 2 cut(s) 128, 470
FspBI CTAG 2 cut(s) 260, 539
GsuI CTGGAG 1 cut(s) 267
Hin1II CATG 2 cut(s) 91, 203
HinfI GANTC 2 cut(s) 236, 554
HphI GGTGA 2 cut(s) 500, 549
Hpy166II GTNNAC 2 cut(s) 82, 328
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 4 cut(s) 200, 284, 312, 434
Hpy8I GTNNAC 2 cut(s) 82, 328
HpyAV CCTTC 4 cut(s) 203, 360, 499, 619
HpyCH4III ACNGT 3 cut(s) 268, 332, 641
HpyCH4V TGCA 7 cut(s) 51, 148, 176, 328, 422, 551, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 548
HpyF3I CTNAG 3 cut(s) 5, 123, 223
Hsp92II CATG 2 cut(s) 91, 203
Kzo9I GATC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 99, 286
LpnPI CCDG 8 cut(s) 158, 297, 325, 447, 515, 573, 575, 657
LweI GCATC 3 cut(s) 185, 448, 574
MaeI CTAG 2 cut(s) 260, 539
MaeIII GTNAC 1 cut(s) 488
MalI GATC 1 cut(s) 572
MboI GATC 1 cut(s) 570
MboII GAAGA 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 127, 162, 424
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 4 cut(s) 144, 224, 311, 556
MroXI GAANNNNTTC 2 cut(s) 192, 307
MwoI GCNNNNNNNGC 2 cut(s) 15, 548
NdeII GATC 1 cut(s) 570
NlaIII CATG 2 cut(s) 91, 203
NlaIV GGNNCC 2 cut(s) 101, 282
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 91
PagI TCATGA 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 192, 307
PfeI GAWTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 290
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 101, 282
PstI CTGCAG 2 cut(s) 150, 553
PstNI CAGNNNCTG 1 cut(s) 154
RsaI GTAC 2 cut(s) 444, 475
RsaNI GTAC 2 cut(s) 443, 474
Sau3AI GATC 1 cut(s) 570
ScaI AGTACT 1 cut(s) 444
SchI GAGTC 1 cut(s) 548
SduI GDGCHC 1 cut(s) 330
SetI ASST 5 cut(s) 73, 195, 229, 538, 544
SfaNI GCATC 3 cut(s) 185, 448, 574
SfcI CTRYAG 2 cut(s) 146, 549
Sse9I AATT 3 cut(s) 127, 162, 424
SspMI CTAG 2 cut(s) 260, 539
TaaI ACNGT 3 cut(s) 268, 332, 641
TaqI TCGA 1 cut(s) 22
TasI AATT 3 cut(s) 127, 162, 424
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 185, 453
TspRI CASTG 1 cut(s) 419
Van91I CCANNNNNTGG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 326
XapI RAATTY 2 cut(s) 127, 424
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 2 cut(s) 192, 307
XspI CTAG 2 cut(s) 260, 539
ZrmI AGTACT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.