Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CASP_dom | PF04535 | 81 - 150 | 1.2e-19 | Casparian strip membrane protein domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 95, 116 |
| AciI | CCGC | 3 cut(s) | 315, 318, 417 |
| AclWI | GGATC | 1 cut(s) | 14 |
| AcoI | YGGCCR | 1 cut(s) | 172 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AfaI | GTAC | 1 cut(s) | 9 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 351 |
| AgsI | TTSAA | 1 cut(s) | 309 |
| AjnI | CCWGG | 2 cut(s) | 190, 233 |
| AluBI | AGCT | 5 cut(s) | 14, 47, 107, 262, 497 |
| AluI | AGCT | 5 cut(s) | 14, 47, 107, 262, 497 |
| AlwI | GGATC | 1 cut(s) | 14 |
| AoxI | GGCC | 2 cut(s) | 172, 342 |
| ApeKI | GCWGC | 4 cut(s) | 14, 104, 107, 326 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 2 cut(s) | 194, 343 |
| AsuHPI | GGTGA | 2 cut(s) | 118, 407 |
| AvaII | GGWCC | 1 cut(s) | 194 |
| BaeGI | GKGCMC | 1 cut(s) | 487 |
| BalI | TGGCCA | 1 cut(s) | 174 |
| BanI | GGYRCC | 2 cut(s) | 95, 116 |
| BbvCI | CCTCAGC | 1 cut(s) | 321 |
| BbvI | GCAGC | 3 cut(s) | 94, 116, 313 |
| BceAI | ACGGC | 2 cut(s) | 104, 117 |
| BciT130I | CCWGG | 2 cut(s) | 192, 235 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfaI | CTAG | 5 cut(s) | 11, 92, 113, 414, 480 |
| BfoI | RGCGCY | 1 cut(s) | 293 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 323 |
| BisI | GCNGC | 6 cut(s) | 15, 105, 108, 315, 318, 327 |
| BlsI | GCNGC | 6 cut(s) | 16, 106, 109, 316, 319, 328 |
| Bme1390I | CCNGG | 2 cut(s) | 192, 235 |
| Bme18I | GGWCC | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 2 cut(s) | 194, 343 |
| BmiI | GGNNCC | 2 cut(s) | 97, 118 |
| BmrFI | CCNGG | 2 cut(s) | 192, 235 |
| BmsI | GCATC | 2 cut(s) | 143, 352 |
| Bpu10I | CCTNAGC | 1 cut(s) | 321 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 351 |
| Bse118I | RCCGGY | 1 cut(s) | 405 |
| BseBI | CCWGG | 2 cut(s) | 192, 235 |
| BseDI | CCNNGG | 2 cut(s) | 99, 129 |
| BseGI | GGATG | 2 cut(s) | 57, 134 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 351 |
| BseMII | CTCAG | 1 cut(s) | 312 |
| BseSI | GKGCMC | 1 cut(s) | 487 |
| BseXI | GCAGC | 3 cut(s) | 94, 116, 313 |
| BseYI | CCCAGC | 1 cut(s) | 47 |
| BshFI | GGCC | 2 cut(s) | 174, 344 |
| BshNI | GGYRCC | 2 cut(s) | 95, 116 |
| BsiSI | CCGG | 1 cut(s) | 406 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 351 |
| BsmI | GAATGC | 1 cut(s) | 434 |
| BsnI | GGCC | 2 cut(s) | 174, 344 |
| Bsp1286I | GDGCHC | 1 cut(s) | 487 |
| Bsp143I | GATC | 2 cut(s) | 19, 31 |
| Bsp19I | CCATGG | 1 cut(s) | 129 |
| BspACI | CCGC | 3 cut(s) | 315, 318, 417 |
| BspANI | GGCC | 2 cut(s) | 174, 344 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspHI | TCATGA | 1 cut(s) | 34 |
| BspLI | GGNNCC | 2 cut(s) | 97, 118 |
| BspPI | GGATC | 1 cut(s) | 14 |
| BspQI | GCTCTTC | 1 cut(s) | 487 |
| BspT107I | GGYRCC | 2 cut(s) | 95, 116 |
| BsrFI | RCCGGY | 1 cut(s) | 405 |
| BssAI | RCCGGY | 1 cut(s) | 405 |
| BssECI | CCNNGG | 2 cut(s) | 99, 129 |
| BssMI | GATC | 2 cut(s) | 19, 31 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| BssT1I | CCWWGG | 1 cut(s) | 129 |
| Bst2UI | CCWGG | 2 cut(s) | 192, 235 |
| Bst4CI | ACNGT | 3 cut(s) | 124, 390, 460 |
| Bst6I | CTCTTC | 2 cut(s) | 156, 487 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 440 |
| BstC8I | GCNNGC | 3 cut(s) | 143, 375, 407 |
| BstDEI | CTNAG | 1 cut(s) | 321 |
| BstDSI | CCRYGG | 2 cut(s) | 99, 129 |
| BstF5I | GGATG | 2 cut(s) | 57, 134 |
| BstH2I | RGCGCY | 1 cut(s) | 293 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 2 cut(s) | 22, 34 |
| BstMBI | GATC | 2 cut(s) | 19, 31 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 104, 116, 268, 323, 326, 440 |
| BstNI | CCWGG | 2 cut(s) | 192, 235 |
| BstSCI | CCNGG | 2 cut(s) | 190, 233 |
| BstSLI | GKGCMC | 1 cut(s) | 487 |
| BstV1I | GCAGC | 3 cut(s) | 94, 116, 313 |
| BsuRI | GGCC | 2 cut(s) | 174, 344 |
| BtgI | CCRYGG | 2 cut(s) | 99, 129 |
| BtsCI | GGATG | 2 cut(s) | 57, 134 |
| BtsIMutI | CAGTG | 1 cut(s) | 456 |
| Cac8I | GCNNGC | 3 cut(s) | 143, 375, 407 |
| CciI | TCATGA | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr10I | RCCGGY | 1 cut(s) | 405 |
| Cfr13I | GGNCC | 2 cut(s) | 194, 343 |
| CseI | GACGC | 1 cut(s) | 227 |
| CsiI | ACCWGGT | 1 cut(s) | 190 |
| Csp6I | GTAC | 1 cut(s) | 8 |
| CviAII | CATG | 3 cut(s) | 29, 35, 130 |
| CviQI | GTAC | 1 cut(s) | 8 |
| DdeI | CTNAG | 1 cut(s) | 321 |
| DpnI | GATC | 2 cut(s) | 21, 33 |
| DpnII | GATC | 2 cut(s) | 19, 31 |
| EaeI | YGGCCR | 1 cut(s) | 172 |
| Eam1104I | CTCTTC | 2 cut(s) | 156, 487 |
| EarI | CTCTTC | 2 cut(s) | 156, 487 |
| Eco130I | CCWWGG | 1 cut(s) | 129 |
| Eco47I | GGWCC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 2 cut(s) | 190, 233 |
| EcoT14I | CCWWGG | 1 cut(s) | 129 |
| ErhI | CCWWGG | 1 cut(s) | 129 |
| FaeI | CATG | 3 cut(s) | 32, 38, 133 |
| FaiI | YATR | 7 cut(s) | 30, 36, 131, 177, 216, 332, 470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 251, 283 |
| FatI | CATG | 3 cut(s) | 28, 34, 129 |
| FauI | CCCGC | 1 cut(s) | 410 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 6 cut(s) | 15, 105, 108, 315, 318, 327 |
| FokI | GGATG | 2 cut(s) | 64, 121 |
| Fsp4HI | GCNGC | 6 cut(s) | 15, 105, 108, 315, 318, 327 |
| FspBI | CTAG | 5 cut(s) | 11, 92, 113, 414, 480 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 6 cut(s) | 15, 105, 108, 315, 318, 327 |
| GsaI | CCCAGC | 1 cut(s) | 51 |
| HaeII | RGCGCY | 1 cut(s) | 293 |
| HaeIII | GGCC | 2 cut(s) | 174, 344 |
| HapII | CCGG | 1 cut(s) | 406 |
| HgaI | GACGC | 1 cut(s) | 227 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin1II | CATG | 3 cut(s) | 32, 38, 133 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HindIII | AAGCTT | 1 cut(s) | 260 |
| HinfI | GANTC | 1 cut(s) | 148 |
| HpaII | CCGG | 1 cut(s) | 406 |
| HphI | GGTGA | 2 cut(s) | 118, 407 |
| Hpy166II | GTNNAC | 2 cut(s) | 242, 337 |
| Hpy188I | TCNGA | 4 cut(s) | 258, 300, 361, 491 |
| Hpy188III | TCNNGA | 1 cut(s) | 35 |
| Hpy8I | GTNNAC | 2 cut(s) | 242, 337 |
| HpyAV | CCTTC | 2 cut(s) | 52, 218 |
| HpyCH4III | ACNGT | 3 cut(s) | 124, 390, 460 |
| HpyCH4V | TGCA | 2 cut(s) | 365, 443 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 104, 116, 268, 323, 326, 440 |
| HpyF3I | CTNAG | 1 cut(s) | 321 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| Hsp92II | CATG | 3 cut(s) | 32, 38, 133 |
| HspAI | GCGC | 1 cut(s) | 290 |
| KroI | GCCGGC | 1 cut(s) | 405 |
| KroNI | GCCGGC | 1 cut(s) | 407 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 2 cut(s) | 19, 31 |
| LguI | GCTCTTC | 1 cut(s) | 487 |
| LmnI | GCTCC | 2 cut(s) | 44, 259 |
| LpnPI | CCDG | 8 cut(s) | 33, 151, 177, 204, 220, 247, 272, 419 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 116, 313 |
| LweI | GCATC | 2 cut(s) | 143, 352 |
| MabI | ACCWGGT | 1 cut(s) | 190 |
| MaeI | CTAG | 5 cut(s) | 11, 92, 113, 414, 480 |
| MaeIII | GTNAC | 2 cut(s) | 124, 218 |
| MalI | GATC | 2 cut(s) | 21, 33 |
| MboI | GATC | 2 cut(s) | 19, 31 |
| MboII | GAAGA | 4 cut(s) | 67, 143, 151, 445 |
| MhlI | GDGCHC | 1 cut(s) | 487 |
| MlsI | TGGCCA | 1 cut(s) | 174 |
| MluCI | AATT | 1 cut(s) | 367 |
| MluNI | TGGCCA | 1 cut(s) | 174 |
| MlyI | GAGTC | 1 cut(s) | 142 |
| MnlI | CCTC | 3 cut(s) | 207, 316, 497 |
| Mox20I | TGGCCA | 1 cut(s) | 174 |
| MroNI | GCCGGC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 174 |
| MseI | TTAA | 1 cut(s) | 499 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| Msp20I | TGGCCA | 1 cut(s) | 174 |
| MspA1I | CMGCKG | 2 cut(s) | 107, 320 |
| MspI | CCGG | 1 cut(s) | 406 |
| MspR9I | CCNGG | 2 cut(s) | 192, 235 |
| Mva1269I | GAATGC | 1 cut(s) | 434 |
| MvaI | CCWGG | 2 cut(s) | 192, 235 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 104, 116, 268, 323, 326, 440 |
| NaeI | GCCGGC | 1 cut(s) | 407 |
| NcoI | CCATGG | 1 cut(s) | 129 |
| NdeII | GATC | 2 cut(s) | 19, 31 |
| NgoMIV | GCCGGC | 1 cut(s) | 405 |
| NlaIII | CATG | 3 cut(s) | 32, 38, 133 |
| NlaIV | GGNNCC | 2 cut(s) | 97, 118 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| PagI | TCATGA | 1 cut(s) | 34 |
| PciSI | GCTCTTC | 1 cut(s) | 487 |
| PctI | GAATGC | 1 cut(s) | 434 |
| PdiI | GCCGGC | 1 cut(s) | 407 |
| PkrI | GCNGC | 6 cut(s) | 16, 106, 109, 316, 319, 328 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| Psp6I | CCWGG | 2 cut(s) | 190, 233 |
| PspFI | CCCAGC | 1 cut(s) | 47 |
| PspGI | CCWGG | 2 cut(s) | 190, 233 |
| PspN4I | GGNNCC | 2 cut(s) | 97, 118 |
| PspPI | GGNCC | 2 cut(s) | 194, 343 |
| PvuII | CAGCTG | 1 cut(s) | 107 |
| RsaI | GTAC | 1 cut(s) | 9 |
| RsaNI | GTAC | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SapI | GCTCTTC | 1 cut(s) | 487 |
| SaqAI | TTAA | 1 cut(s) | 499 |
| SatI | GCNGC | 6 cut(s) | 15, 105, 108, 315, 318, 327 |
| Sau3AI | GATC | 2 cut(s) | 19, 31 |
| Sau96I | GGNCC | 2 cut(s) | 194, 343 |
| SchI | GAGTC | 1 cut(s) | 142 |
| ScrFI | CCNGG | 2 cut(s) | 192, 235 |
| SduI | GDGCHC | 1 cut(s) | 487 |
| SetI | ASST | 8 cut(s) | 16, 49, 97, 109, 118, 193, 264, 499 |
| SexAI | ACCWGGT | 1 cut(s) | 190 |
| SfaNI | GCATC | 2 cut(s) | 143, 352 |
| SinI | GGWCC | 1 cut(s) | 194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| Sse9I | AATT | 1 cut(s) | 367 |
| SsiI | CCGC | 3 cut(s) | 315, 318, 417 |
| SspMI | CTAG | 5 cut(s) | 11, 92, 113, 414, 480 |
| StyD4I | CCNGG | 2 cut(s) | 190, 233 |
| StyI | CCWWGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 3 cut(s) | 124, 390, 460 |
| TaqI | TCGA | 2 cut(s) | 75, 279 |
| TasI | AATT | 1 cut(s) | 367 |
| TauI | GCSGC | 2 cut(s) | 317, 320 |
| Tru1I | TTAA | 1 cut(s) | 499 |
| Tru9I | TTAA | 1 cut(s) | 499 |
| TscAI | CASTG | 1 cut(s) | 463 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 4 cut(s) | 14, 104, 107, 326 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspDTI | ATGAA | 2 cut(s) | 68, 70 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| TspRI | CASTG | 1 cut(s) | 463 |
| VpaK11BI | GGWCC | 1 cut(s) | 194 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 127, 337 |
| XspI | CTAG | 5 cut(s) | 11, 92, 113, 414, 480 |