Rroxscaffold_5G00347790

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000058
Physical Location & Seq
Forward (+)
19374023 .. 19377796
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347790.1

Sequence Viewer

Length: 2718 bp
ATGGGAAACCCACGAATGCTAATCCCATTTGGACTAGTAGTGTTACTTCACTACTCATTCTTCCTTCACCCGGCCACCACCTCCTCCTCCAACTTCACCGACCAATCTGCTCTCCTTGCCATTCAATCCAAACTCACATTTGATCCTACCAAAACTGTCTTGGGTGGTAATTGGGGTACCAACACAAGCTTCTGTGATTGGATTGGGGTCTCATGCAGTAAACGAAGGCAGAGAGTCACGGCCTTGGACTTGTCATCTATGGGTCTTGAAGGCACCATTGCACCTCATGTTGGCAACCTCTCCTTTCTGGTCATATTGGTTCTTCAAAACAACAGCTTCTCTGGGATTGTGCCAAATGAAATCAGCCATTTACACCGCTTGAGGGTACTTGTACTGGAAGCGAACCGGTTGGAAGGGCACATCCCTGCAACTTTATATCATTGCCAAAAGCTCGAAATCATTGCCCTGGCAGAAAACAATCTTACGGGTCGAGTTCTTCCTGAGGATCTTTGCCATTACTGGCCTAATATTCAACACATTGCTTTATCTAGAAACAAGCTTGGCGGCCAGCTCTCTTCGAGATTTAATCAATGCAGTAACATTGAGGTGTTATCTCTGTCATACAATAGGTTTGTCGGAACTATTCCAAAAGACCTTGCAAGTTTACAGCATCTTGAAGTGCTCTACCTCGGTGGTAATGGCTTAACCGGTACTGTACCACCTGTCCTAGGACTCAGTACCAATTTACTCTATGGACCAATTCCCATGAATCTTGGTAGCCTAAAACACCTCCAGTACCTTGATTTGGCAAGAAATCAGTTGACTGGAGAACCTGGAGTTCCTGAACTTAAATTCCTTTCCTCATTATTCAATTCCACTTCGCTGCGAGAGTTGGTTCTGACTGAAAATCCTCTAAATGGCATCATACCCAATTCCTTTGGAAATTTTTCTTCCCTTCAGCACATTTCAGCAATTTCGTGCCAGATAAAGGGTCACATTCCCACAAAAATTCTTTCCTTGAAAAGTTTAATCTACCTTAAATTTGTGGACAACAATATAAGTGGAAAAATACCACCACAGATTGGAGGACTGGAGAGGTTACAAAGGTTGTATCTGAGCTTCAACAGAATTGAAGGATCCATTCCATATGAGATCTGTCATCTGCAGAACCTAGGAGAACTATCACTAGAGAATAACAAAATCTCTGGATTGATCCCAAATTGCATTGGAAACCTCAGCCGCACCCTTCAAATATTTCTCCTAAATTCCAACCAAATGACATCCTTGATACCAATGAATTTATTATGGAACCTTGAAAATCTCTTGGTGTTAAATTTGTCATCCAATTCCTTCAGTGGAGACATACCTACCACCTTGACAAAGTCGATTTCCATTGAAGTGATTGATTTATCTCATAACCAAATTACTGGTAATATTTCAAGCATCATAGTAGCATCCCAAAGCGTAGCTTACCTTGATTTGTCAAAGAACTGGTTTATAGGATCCATTCCACCGAGCTGTGGTGATCTGAAAGGGTTAGAGTATCTGGACCTATCATACAATAACCTGTCTGGTGCAATACCAAAATCTCTTGAAACACTCAAATATCTCCAGTATTTGAACCTCTCTTTCAATAATCTCTTTGGAGAGATTCCTTCTCGTGGGCCTTTTGTAAACTTTAGTTCCCGATCATTTTTGGAGAATAAAGCACTTTGTGGGAGACCAAAGTATGGAGTTCCACCTTGTATGACTCAAAAAACAAAAACGACACATCCTGTGCTCACATATGTTCTTCCTAGCATTGCATCGACAGTGATTCTGATAGCCCTCATTTATATGATCACATGGTATAGAAAAAGAAAGAGAGGCAAGAGTACAACAGTTGAACAGCTAACAACAGTGGAGCATAGTAGGATATCATATCAAGAACTCCGTCGCGCTACAAATGAGTTTTGTGAAAGCAACTTTCTTGGAGGGGGAAGTTTTGGCTCGGTGTACAAGGGGATACTGTCTAATGGGACTACTATTGCTGTCAAAATTCTTAAACTGGAAATGGAGGGTGCTGTAAAAAGTTTTGATGCAGAATGCAAGTACATGTCTAATGGCAGTCTTGAGAAGTGGTTATACTCTCACAACTACTGTCTCAGTATTCTGCAAAGAGTGAGTATGTTGATTGATATTGCATCTGCTTTGGAATATCTCCATCATGGTCAAGCAGAAGCAGTGGTGCACTGTGATGTGAAGCCTGGGAATATCCTTCTTGATGAAGACATGGTTGCACATGTTGCAGACTTCGGTCTTGCAAAAATTTTAGCAAAAAACAAAGAGGAAACACAGACAAGAACCATAGGCCCTCTGGGATACGTAGCACCAGAGTATGGTTCCGCAGGAAAAGTGTCCAAAAAGGGTGATGTCTATAGCTTTGGGATAATGCTGCTGGAAATAATGGCGAGAAAGAAACCCACTGATGAAATGTTTGCCGGAGAAGTGACTTTGAGGCAATGGATAAATGTATCTGTCCCTGATTATGTTCTGAAAGTGGTGGATGCTGGCTTATTGAGCATAGAAGAGGAAAGAGACATGAATGCCACAGAAAGTATCCTAGTGTCCATCCTGGAAATAGGCTTGAGGTGTTCGGAAGAAGCAGCAGAGGATAGAATGGATATTAAGGATGTGGTGCCCAAGCTCAAGAAAATAAAATTGGCACTACAACATTGA

Protein Analysis

905

Amino Acids

100.07

Weight (kDa)

8.02

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 175 - 235 1.4e-06 Leucine rich repeat
LRR_14 PF23598 334 - 463 1.5e-08 Leucine-rich repeat region
LRR_8 PF13855 488 - 547 3.3e-10 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 697 - 896 4e-28 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 697 - 823 4.5e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 176
AccB1I GGYRCC 3 cut(s) 176, 272, 2677
AccB7I CCANNNNNTGG 3 cut(s) 1082, 1730, 2378
AccII CGCG 1 cut(s) 1938
AciI CCGC 4 cut(s) 376, 564, 1240, 2385
AclWI GGATC 7 cut(s) 137, 513, 1131, 1144, 1207, 1497, 1510
AcoI YGGCCR 2 cut(s) 72, 565
AcsI RAATTY 9 cut(s) 851, 943, 1008, 1040, 1264, 1297, 1333, 2037, 2307
AcuI CTGAAG 2 cut(s) 941, 1336
AdeI CACNNNGTG 1 cut(s) 1715
AflIII ACRYGT 2 cut(s) 2094, 2281
AgeI ACCGGT 2 cut(s) 405, 707
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 4 cut(s) 465, 832, 2245, 2613
AjuI GAANNNNNNNTTGG 4 cut(s) 173, 205, 2684, 2716
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
Alw21I GWGCWC 3 cut(s) 684, 1782, 2232
Alw26I GTCTC 5 cut(s) 214, 1353, 1714, 2147, 2571
Alw44I GTGCAC 1 cut(s) 2228
AlwI GGATC 7 cut(s) 137, 513, 1131, 1144, 1207, 1497, 1510
AoxI GGCC 6 cut(s) 72, 240, 521, 565, 1664, 2350
ApaLI GTGCAC 1 cut(s) 2228
ApeKI GCWGC 3 cut(s) 883, 2434, 2645
ApoI RAATTY 9 cut(s) 851, 943, 1008, 1040, 1264, 1297, 1333, 2037, 2307
AsiGI ACCGGT 2 cut(s) 405, 707
Asp700I GAANNNNTTC 1 cut(s) 946
Asp718I GGTACC 1 cut(s) 176
AspA2I CCTAGG 2 cut(s) 727, 1171
AspLEI GCGC 1 cut(s) 1940
AspS9I GGNCC 4 cut(s) 755, 1549, 1664, 2351
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 59, 88, 1535, 2420
AvaII GGWCC 2 cut(s) 755, 1549
AvrII CCTAGG 2 cut(s) 727, 1171
AxyI CCTNAGG 1 cut(s) 501
BaeGI GKGCMC 3 cut(s) 420, 2232, 2682
BamHI GGATCC 2 cut(s) 1136, 1502
BanI GGYRCC 3 cut(s) 176, 272, 2677
BarI GAAGNNNNNNTAC 6 cut(s) 30, 62, 1103, 1135, 2108, 2140
BauI CACGAG 1 cut(s) 1659
BbsI GAAGAC 1 cut(s) 2274
Bbv12I GWGCWC 3 cut(s) 684, 1782, 2232
BbvCI CCTCAGC 1 cut(s) 1235
BbvI GCAGC 3 cut(s) 870, 2421, 2657
BccI CCATC 2 cut(s) 2211, 2618
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 4 cut(s) 89, 123, 443, 477
BciT130I CCWGG 4 cut(s) 467, 834, 2247, 2615
BciVI GTATCC 3 cut(s) 1998, 2354, 2609
BclI TGATCA 1 cut(s) 1839
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 5 cut(s) 214, 1353, 1714, 2147, 2571
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 7 cut(s) 35, 549, 728, 1172, 1187, 1797, 2603
BfmI CTRYAG 2 cut(s) 1163, 2416
BfuI GTATCC 3 cut(s) 1998, 2354, 2609
BglII AGATCT 1 cut(s) 1152
BisI GCNGC 5 cut(s) 565, 884, 1240, 2435, 2646
BlnI CCTAGG 2 cut(s) 727, 1171
BlsI GCNGC 5 cut(s) 566, 885, 1241, 2436, 2647
Bme1390I CCNGG 5 cut(s) 71, 467, 834, 2247, 2615
Bme18I GGWCC 2 cut(s) 755, 1549
BmgT120I GGNCC 4 cut(s) 755, 1549, 1664, 2351
BmiI GGNNCC 7 cut(s) 178, 274, 1138, 1310, 1504, 2383, 2679
BmrFI CCNGG 5 cut(s) 71, 467, 834, 2247, 2615
BmsI GCATC 8 cut(s) 679, 930, 1452, 1463, 1814, 2068, 2192, 2536
BoxI GACNNNNGTC 1 cut(s) 2295
BpiI GAAGAC 1 cut(s) 2274
BpmI CTGGAG 5 cut(s) 776, 846, 855, 1112, 1595
Bpu10I CCTNAGC 1 cut(s) 1235
BpuEI CTTGAG 4 cut(s) 400, 2132, 2647, 2672
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 2365
BsaI GGTCTC 2 cut(s) 214, 1714
BsaJI CCNNGG 6 cut(s) 243, 465, 688, 727, 1171, 2246
BsaWI WCCGGW 2 cut(s) 405, 707
Bse118I RCCGGY 2 cut(s) 405, 707
Bse1I ACTGG 9 cut(s) 399, 524, 793, 829, 1095, 1432, 1496, 1612, 2052
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 6 cut(s) 276, 439, 459, 537, 1800, 2507
BseBI CCWGG 4 cut(s) 467, 834, 2247, 2615
BseDI CCNNGG 6 cut(s) 243, 465, 688, 727, 1171, 2246
BseGI GGATG 8 cut(s) 420, 1280, 1340, 1454, 1771, 2551, 2610, 2677
BseMI GCAATG 6 cut(s) 276, 439, 459, 537, 1800, 2507
BseMII CTCAG 5 cut(s) 492, 748, 1106, 1249, 2158
BseNI ACTGG 9 cut(s) 399, 524, 793, 829, 1095, 1432, 1496, 1612, 2052
BseRI GAGGAG 2 cut(s) 73, 76
BseSI GKGCMC 3 cut(s) 420, 2232, 2682
BseXI GCAGC 3 cut(s) 870, 2421, 2657
Bsh1236I CGCG 1 cut(s) 1938
BshFI GGCC 6 cut(s) 74, 242, 523, 567, 1666, 2352
BshNI GGYRCC 3 cut(s) 176, 272, 2677
BshTI ACCGGT 2 cut(s) 405, 707
BsiHKAI GWGCWC 3 cut(s) 684, 1782, 2232
BsiSI CCGG 4 cut(s) 71, 406, 708, 2481
BslFI GGGAC 2 cut(s) 2032, 2504
BsmAI GTCTC 5 cut(s) 214, 1353, 1714, 2147, 2571
BsmFI GGGAC 2 cut(s) 2032, 2504
BsmI GAATGC 3 cut(s) 21, 2090, 2590
BsnI GGCC 6 cut(s) 74, 242, 523, 567, 1666, 2352
Bso31I GGTCTC 2 cut(s) 214, 1714
Bsp1286I GDGCHC 5 cut(s) 420, 684, 1782, 2232, 2682
Bsp1407I TGTACA 1 cut(s) 1995
Bsp143I GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
BspACI CCGC 4 cut(s) 376, 564, 1240, 2385
BspANI GGCC 6 cut(s) 74, 242, 523, 567, 1666, 2352
BspCNI CTCAG 5 cut(s) 493, 747, 1107, 1248, 2157
BspFNI CGCG 1 cut(s) 1938
BspLI GGNNCC 7 cut(s) 178, 274, 1138, 1310, 1504, 2383, 2679
BspMAI CTGCAG 1 cut(s) 1167
BspPI GGATC 7 cut(s) 137, 513, 1131, 1144, 1207, 1497, 1510
BspT107I GGYRCC 3 cut(s) 176, 272, 2677
BspTNI GGTCTC 2 cut(s) 214, 1714
BsrDI GCAATG 6 cut(s) 276, 439, 459, 537, 1800, 2507
BsrFI RCCGGY 2 cut(s) 405, 707
BsrGI TGTACA 1 cut(s) 1995
BsrI ACTGG 9 cut(s) 399, 524, 793, 829, 1095, 1432, 1496, 1612, 2052
BssAI RCCGGY 2 cut(s) 405, 707
BssECI CCNNGG 6 cut(s) 243, 465, 688, 727, 1171, 2246
BssMI GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
BssSI CACGAG 1 cut(s) 1659
BssT1I CCWWGG 3 cut(s) 243, 727, 1171
Bst2BI CACGAG 1 cut(s) 1659
Bst2UI CCWGG 4 cut(s) 467, 834, 2247, 2615
Bst4CI ACNGT 8 cut(s) 157, 715, 1813, 1882, 1900, 2010, 2141, 2234
Bst6I CTCTTC 2 cut(s) 580, 2562
BstAPI GCANNNNNTGC 1 cut(s) 2285
BstAUI TGTACA 1 cut(s) 1995
BstBAI YACGTR 1 cut(s) 2365
BstC8I GCNNGC 2 cut(s) 569, 2551
BstDEI CTNAG 5 cut(s) 501, 734, 1115, 1235, 2144
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 8 cut(s) 420, 1280, 1340, 1454, 1771, 2551, 2610, 2677
BstFNI CGCG 1 cut(s) 1938
BstHHI GCGC 1 cut(s) 1940
BstKTI GATC 9 cut(s) 145, 508, 1139, 1155, 1215, 1505, 1528, 1691, 1842
BstMAI GTCTC 5 cut(s) 214, 1353, 1714, 2147, 2571
BstMBI GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
BstMWI GCNNNNNNNGC 3 cut(s) 116, 2285, 2559
BstNI CCWGG 4 cut(s) 467, 834, 2247, 2615
BstNSI RCATGY 2 cut(s) 2098, 2285
BstPAI GACNNNNGTC 1 cut(s) 2295
BstSCI CCNGG 5 cut(s) 69, 465, 832, 2245, 2613
BstSFI CTRYAG 2 cut(s) 1163, 2416
BstSLI GKGCMC 3 cut(s) 420, 2232, 2682
BstSNI TACGTA 1 cut(s) 2365
BstUI CGCG 1 cut(s) 1938
BstV1I GCAGC 3 cut(s) 870, 2421, 2657
BstV2I GAAGAC 1 cut(s) 2274
BstX2I RGATCY 4 cut(s) 505, 1136, 1152, 1502
BstXI CCANNNNNNTGG 1 cut(s) 1427
BstYI RGATCY 4 cut(s) 505, 1136, 1152, 1502
Bsu36I CCTNAGG 1 cut(s) 501
BsuI GTATCC 3 cut(s) 1998, 2354, 2609
BsuRI GGCC 6 cut(s) 74, 242, 523, 567, 1666, 2352
BtsCI GGATG 8 cut(s) 420, 1280, 1340, 1454, 1771, 2551, 2610, 2677
BtsI GCAGTG 1 cut(s) 2229
BtsIMutI CAGTG 6 cut(s) 1360, 1818, 1905, 2229, 2230, 2463
Cac8I GCNNGC 2 cut(s) 569, 2551
CfoI GCGC 1 cut(s) 1940
Cfr10I RCCGGY 2 cut(s) 405, 707
Cfr13I GGNCC 4 cut(s) 755, 1549, 1664, 2351
CspAI ACCGGT 2 cut(s) 405, 707
CspCI CAANNNNNGTGG 2 cut(s) 1042, 1077
CviAII CATG 9 cut(s) 213, 287, 766, 1845, 2095, 2207, 2272, 2282, 2581
DdeI CTNAG 5 cut(s) 501, 734, 1115, 1235, 2144
DpnI GATC 9 cut(s) 144, 507, 1138, 1154, 1214, 1504, 1527, 1690, 1841
DpnII GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
DraIII CACNNNGTG 1 cut(s) 1715
EaeI YGGCCR 2 cut(s) 72, 565
Eam1104I CTCTTC 2 cut(s) 580, 2562
EarI CTCTTC 2 cut(s) 580, 2562
Eco105I TACGTA 1 cut(s) 2365
Eco130I CCWWGG 3 cut(s) 243, 727, 1171
Eco31I GGTCTC 2 cut(s) 214, 1714
Eco32I GATATC 1 cut(s) 1917
Eco47I GGWCC 2 cut(s) 755, 1549
Eco57I CTGAAG 2 cut(s) 941, 1336
Eco81I CCTNAGG 1 cut(s) 501
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 2351
EcoRII CCWGG 4 cut(s) 465, 832, 2245, 2613
EcoRV GATATC 1 cut(s) 1917
EcoT14I CCWWGG 3 cut(s) 243, 727, 1171
ErhI CCWWGG 3 cut(s) 243, 727, 1171
FaeI CATG 9 cut(s) 216, 290, 769, 1848, 2098, 2210, 2275, 2285, 2584
FalI AAGNNNNNCTT 2 cut(s) 1453, 1485
FaqI GGGAC 2 cut(s) 2032, 2504
FatI CATG 9 cut(s) 212, 286, 765, 1844, 2094, 2206, 2271, 2281, 2580
FauNDI CATATG 2 cut(s) 1147, 1786
FbaI TGATCA 1 cut(s) 1839
Fnu4HI GCNGC 5 cut(s) 565, 884, 1240, 2435, 2646
FokI GGATG 8 cut(s) 407, 1267, 1327, 1441, 1758, 2558, 2597, 2684
Fsp4HI GCNGC 5 cut(s) 565, 884, 1240, 2435, 2646
FspBI CTAG 7 cut(s) 35, 549, 728, 1172, 1187, 1797, 2603
GlaI GCGC 1 cut(s) 1939
GluI GCNGC 5 cut(s) 565, 884, 1240, 2435, 2646
GsuI CTGGAG 5 cut(s) 776, 846, 855, 1112, 1595
HaeIII GGCC 6 cut(s) 74, 242, 523, 567, 1666, 2352
HapII CCGG 4 cut(s) 71, 406, 708, 2481
HhaI GCGC 1 cut(s) 1940
Hin1II CATG 9 cut(s) 216, 290, 769, 1848, 2098, 2210, 2275, 2285, 2584
Hin6I GCGC 1 cut(s) 1938
HinP1I GCGC 1 cut(s) 1938
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HindIII AAGCTT 2 cut(s) 187, 557
HinfI GANTC 6 cut(s) 234, 732, 769, 1651, 1750, 1816
HpaII CCGG 4 cut(s) 71, 406, 708, 2481
HphI GGTGA 4 cut(s) 59, 88, 1535, 2420
Hpy166II GTNNAC 7 cut(s) 221, 665, 822, 1048, 1675, 1996, 2230
Hpy188I TCNGA 7 cut(s) 638, 900, 1116, 1530, 1821, 2535, 2638
Hpy8I GTNNAC 7 cut(s) 221, 665, 822, 1048, 1675, 1996, 2230
Hpy99I CGWCG 1 cut(s) 1938
HpyCH4III ACNGT 8 cut(s) 157, 715, 1813, 1882, 1900, 2010, 2141, 2234
HpyCH4IV ACGT 1 cut(s) 2364
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 2285, 2559
HpyF3I CTNAG 5 cut(s) 501, 734, 1115, 1235, 2144
HpySE526I ACGT 1 cut(s) 2364
Hsp92II CATG 9 cut(s) 216, 290, 769, 1848, 2098, 2210, 2275, 2285, 2584
HspAI GCGC 1 cut(s) 1938
KpnI GGTACC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 1839
Kzo9I GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
LmnI GCTCC 1 cut(s) 1903
Lsp1109I GCAGC 3 cut(s) 870, 2421, 2657
LweI GCATC 8 cut(s) 679, 930, 1452, 1463, 1814, 2068, 2192, 2536
MaeI CTAG 7 cut(s) 35, 549, 728, 1172, 1187, 1797, 2603
MaeII ACGT 1 cut(s) 2364
MaeIII GTNAC 6 cut(s) 42, 235, 596, 992, 1098, 2488
MalI GATC 9 cut(s) 144, 507, 1138, 1154, 1214, 1504, 1527, 1690, 1841
MboI GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
MboII GAAGA 9 cut(s) 52, 314, 488, 567, 942, 1784, 2279, 2579, 2651
MflI RGATCY 4 cut(s) 505, 1136, 1152, 1502
MhlI GDGCHC 5 cut(s) 420, 684, 1782, 2232, 2682
MlyI GAGTC 3 cut(s) 243, 726, 1744
MmeI TCCRAC 4 cut(s) 114, 390, 616, 1293
MroXI GAANNNNTTC 1 cut(s) 946
MseI TTAA 8 cut(s) 585, 704, 849, 1028, 1038, 1331, 2043, 2667
MslI CAYNNNNRTG 4 cut(s) 605, 1397, 1835, 2235
MspI CCGG 4 cut(s) 71, 406, 708, 2481
MspR9I CCNGG 5 cut(s) 71, 467, 834, 2247, 2615
Mva1269I GAATGC 3 cut(s) 21, 2090, 2590
MvaI CCWGG 4 cut(s) 467, 834, 2247, 2615
MvnI CGCG 1 cut(s) 1938
MwoI GCNNNNNNNGC 3 cut(s) 116, 2285, 2559
NciI CCSGG 1 cut(s) 71
NdeI CATATG 2 cut(s) 1147, 1786
NdeII GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
NlaIII CATG 9 cut(s) 216, 290, 769, 1848, 2098, 2210, 2275, 2285, 2584
NlaIV GGNNCC 7 cut(s) 178, 274, 1138, 1310, 1504, 2383, 2679
NmuCI GTSAC 3 cut(s) 235, 992, 2488
NspI RCATGY 2 cut(s) 2098, 2285
PciI ACATGT 2 cut(s) 2094, 2281
PctI GAATGC 3 cut(s) 21, 2090, 2590
PdmI GAANNNNTTC 1 cut(s) 946
PfeI GAWTC 3 cut(s) 769, 1651, 1816
PflFI GACNNNGTC 1 cut(s) 1381
PflMI CCANNNNNTGG 3 cut(s) 1082, 1730, 2378
PfoI TCCNGGA 1 cut(s) 2613
PinAI ACCGGT 2 cut(s) 405, 707
PkrI GCNGC 5 cut(s) 566, 885, 1241, 2436, 2647
PleI GAGTC 3 cut(s) 242, 726, 1744
PpsI GAGTC 3 cut(s) 242, 726, 1744
Ppu21I YACGTR 1 cut(s) 2365
PscI ACATGT 2 cut(s) 2094, 2281
PshAI GACNNNNGTC 1 cut(s) 2295
Psp6I CCWGG 4 cut(s) 465, 832, 2245, 2613
PspGI CCWGG 4 cut(s) 465, 832, 2245, 2613
PspN4I GGNNCC 7 cut(s) 178, 274, 1138, 1310, 1504, 2383, 2679
PspPI GGNCC 4 cut(s) 755, 1549, 1664, 2351
PstI CTGCAG 1 cut(s) 1167
PsuI RGATCY 4 cut(s) 505, 1136, 1152, 1502
PsyI GACNNNGTC 1 cut(s) 1381
RseI CAYNNNNRTG 4 cut(s) 605, 1397, 1835, 2235
SaqAI TTAA 8 cut(s) 585, 704, 849, 1028, 1038, 1331, 2043, 2667
SatI GCNGC 5 cut(s) 565, 884, 1240, 2435, 2646
Sau3AI GATC 9 cut(s) 142, 505, 1136, 1152, 1212, 1502, 1525, 1688, 1839
Sau96I GGNCC 4 cut(s) 755, 1549, 1664, 2351
SchI GAGTC 3 cut(s) 243, 726, 1744
ScrFI CCNGG 5 cut(s) 71, 467, 834, 2247, 2615
SduI GDGCHC 5 cut(s) 420, 684, 1782, 2232, 2682
SfaNI GCATC 8 cut(s) 679, 930, 1452, 1463, 1814, 2068, 2192, 2536
SfcI CTRYAG 2 cut(s) 1163, 2416
SinI GGWCC 2 cut(s) 755, 1549
SmiMI CAYNNNNRTG 4 cut(s) 605, 1397, 1835, 2235
SmlI CTYRAG 4 cut(s) 379, 2111, 2626, 2687
SmoI CTYRAG 4 cut(s) 379, 2111, 2626, 2687
SnaBI TACGTA 1 cut(s) 2365
SpeI ACTAGT 1 cut(s) 34
SsiI CCGC 4 cut(s) 376, 564, 1240, 2385
SspI AATATT 3 cut(s) 529, 1254, 1435
SspMI CTAG 7 cut(s) 35, 549, 728, 1172, 1187, 1797, 2603
StyD4I CCNGG 5 cut(s) 69, 465, 832, 2245, 2613
StyI CCWWGG 3 cut(s) 243, 727, 1171
TaaI ACNGT 8 cut(s) 157, 715, 1813, 1882, 1900, 2010, 2141, 2234
TaiI ACGT 1 cut(s) 2367
TaqI TCGA 5 cut(s) 453, 490, 578, 1385, 1808
TaqII GACCGA 1 cut(s) 2285
TatI WGTACW 4 cut(s) 391, 1874, 1995, 2091
TauI GCSGC 2 cut(s) 567, 1242
TfiI GAWTC 3 cut(s) 769, 1651, 1816
Tru1I TTAA 8 cut(s) 585, 704, 849, 1028, 1038, 1331, 2043, 2667
Tru9I TTAA 8 cut(s) 585, 704, 849, 1028, 1038, 1331, 2043, 2667
TscAI CASTG 6 cut(s) 1360, 1818, 1905, 2229, 2237, 2470
TseFI GTSAC 3 cut(s) 235, 992, 2488
TseI GCWGC 3 cut(s) 883, 2434, 2645
Tsp45I GTSAC 3 cut(s) 235, 992, 2488
TspDTI ATGAA 6 cut(s) 372, 782, 1310, 2280, 2484, 2597
TspGWI ACGGA 1 cut(s) 1922
TspRI CASTG 6 cut(s) 1360, 1818, 1905, 2229, 2237, 2470
Tth111I GACNNNGTC 1 cut(s) 1381
Van91I CCANNNNNTGG 3 cut(s) 1082, 1730, 2378
VneI GTGCAC 1 cut(s) 2228
VpaK11BI GGWCC 2 cut(s) 755, 1549
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 9 cut(s) 851, 943, 1008, 1040, 1264, 1297, 1333, 2037, 2307
XbaI TCTAGA 1 cut(s) 548
XceI RCATGY 2 cut(s) 2098, 2285
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 2353
XmaJI CCTAGG 2 cut(s) 727, 1171
XmnI GAANNNNTTC 1 cut(s) 946
XspI CTAG 7 cut(s) 35, 549, 728, 1172, 1187, 1797, 2603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.