Rw0G001440

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00043
Physical Location & Seq
Reverse (-)
112096 .. 112662
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001440.1

Sequence Viewer

Length: 483 bp
ATGGGTGCACATGTTGCTGATTTTGGCATCGCAAAACGCTTGGGTGGAGGAGATTCTATGACTCGAACCATGACCCTTGCCACAATCGGTTATATGGCTCCAGAGTATGGAATGGAAGGAATGGTAACCAGAAGAGGGGATGTGTATAGTTTTGGTATTGTAGTGATGGAGACATTCACAAGAAGGAAGCCAATTGATGAGATCTTCGCTGGGGAAATGAGTTTAAAGCTATGGGTTGCAAATTCATTAGATGCAGGGGCGGTAGTTAAAGTTGTGGATGCTACTTTACTTGGAATAGAGGAGGATCATGATTTTGTGAGCAAGAGGGAATGTTTATCATCTGTTATGAGACTAGCTGTTGCTTGTTCAGCAGACTCACCAGAAGAGAGAGTAAATATGCAAGAGGCTCTCGCCACGTTAGAGGAGGTGTCGAACAGCCCTCTTCTTCAAGGATCCGAATCCTCTAAAATCGTAGGGTTGTAA

Protein Analysis

160

Amino Acids

17.24

Weight (kDa)

4.76

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 138 7.6e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 138 2.8e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13810 FvH4_3g07490 FvH4_3g07510 FvH4_3g07541 FvH4_3g10100 FvH4_3g14951 FvH4_3g22681 FvH4_3g37722 FvH4_5g08260 FvH4_5g08280 FvH4_7g09050 FvH4_7g09050
malus_domestica MD00G1192900.v1.1 MD00G1214300.v1.1 MD02G1291600.v1.1 MD02G1291800.v1.1 MD03G1138500.v1.1 MD03G1180000.v1.1 MD03G1180600.v1.1 MD03G1180700.v1.1 MD03G1180800.v1.1 MD03G1180900.v1.1 MD03G1182000.v1.1 MD03G1182800.v1.1 MD03G1280900.v1.1 MD05G1297700.v1.1 MD05G1298100.v1.1 MD05G1298400.v1.1 MD07G1034700.v1.1 MD07G1034900.v1.1 MD07G1035000.v1.1 MD07G1035900.v1.1 MD07G1168700.v1.1 MD07G1235700.v1.1 MD07G1235900.v1.1 MD07G1236200.v1.1 MD07G1236500.v1.1 MD07G1236800.v1.1 MD10G1212700.v1.1 MD10G1277400.v1.1 MD10G1277600.v1.1 MD11G1180300.v1.1 MD13G1193600.v1.1
prunus_persica Prupe.1G074000_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G044400_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.2G048900_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G057800_v2.0.a1 Prupe.4G063200_v2.0.a1 Prupe.4G063300_v2.0.a1 Prupe.4G063400_v2.0.a1 Prupe.4G063600_v2.0.a1 Prupe.4G064200_v2.0.a1 Prupe.4G064400_v2.0.a1 Prupe.4G064500_v2.0.a1 Prupe.4G064600_v2.0.a1 Prupe.4G076800_v2.0.a1 Prupe.6G160800_v2.0.a1 Prupe.6G160900_v2.0.a1 Prupe.6G294300_v2.0.a1 Prupe.7G141600_v2.0.a1
pyrus_communis pycom03g06490 pycom03g13610 pycom03g13640 pycom03g13660 pycom05g27580 pycom05g27600 pycom05g27620 pycom07g02450 pycom10g23160
rosa_chinensis RchiOBHm_Chr1g0336221 RchiOBHm_Chr2g0113611 RchiOBHm_Chr2g0113631 RchiOBHm_Chr2g0113661 RchiOBHm_Chr2g0113761 RchiOBHm_Chr2g0113861 RchiOBHm_Chr2g0113951 RchiOBHm_Chr2g0114021 RchiOBHm_Chr2g0114121 RchiOBHm_Chr2g0114161 RchiOBHm_Chr2g0114221 RchiOBHm_Chr2g0114281 RchiOBHm_Chr2g0114381 RchiOBHm_Chr2g0115761 RchiOBHm_Chr4g0387401 RchiOBHm_Chr4g0402601 RchiOBHm_Chr4g0403091 RchiOBHm_Chr4g0403141 RchiOBHm_Chr4g0403171 RchiOBHm_Chr4g0403191 RchiOBHm_Chr4g0403231 RchiOBHm_Chr4g0403281 RchiOBHm_Chr4g0403311 RchiOBHm_Chr4g0404191 RchiOBHm_Chr4g0404211 RchiOBHm_Chr4g0404231 RchiOBHm_Chr4g0404261 RchiOBHm_Chr4g0404341 RchiOBHm_Chr4g0404451 RchiOBHm_Chr4g0404511 RchiOBHm_Chr4g0404521 RchiOBHm_Chr4g0404541 RchiOBHm_Chr5g0011141 RchiOBHm_Chr5g0011171 RchiOBHm_Chr5g0011191 RchiOBHm_Chr5g0011261 RchiOBHm_Chr5g0011271 RchiOBHm_Chr5g0011291 RchiOBHm_Chr5g0011331 RchiOBHm_Chr5g0011691 RchiOBHm_Chr5g0014361 RchiOBHm_Chr5g0016021 RchiOBHm_Chr5g0040131 RchiOBHm_Chr5g0040431 RchiOBHm_Chr5g0040461 RchiOBHm_Chr5g0040481 RchiOBHm_Chr5g0042071 RchiOBHm_Chr5g0042121 RchiOBHm_Chr5g0059161 RchiOBHm_Chr6g0251871 RchiOBHm_Chr6g0277701 RchiOBHm_Chr6g0277761 RchiOBHm_Chr7g0213281
rosa_laevigata RLG00000001438 RLG00000002815 RLG00000008984 RLG00000008985 RLG00000008988 RLG00000008989 RLG00000008991 RLG00000008997 RLG00000008998 RLG00000009000 RLG00000009002 RLG00000009021 RLG00000009024 RLG00000009025 RLG00000009026 RLG00000013277 RLG00000013282 RLG00000017615 RLG00000018077 RLG00000018079 RLG00000018081 RLG00000018087 RLG00000018089 RLG00000018092 RLG00000018096 RLG00000031799 RLG00000031800 RLG00000031812 RLG00000031817 RLG00000031823 RLG00000031824 RLG00000031825 RLG00000031826 RLG00000031853 RLG00000031856 RLG00000032101 RLG00000032235 RLG00000033958 RLG00000033978 RLG00000033983
rosa_multiflora Rmu_co8051036.1_g000001 Rmu_co8262527.1_g000001 Rmu_sc0000225.1_g000018 Rmu_sc0000299.1_g000020 Rmu_sc0000437.1_g000001 Rmu_sc0000694.1_g000007 Rmu_sc0000881.1_g000004 Rmu_sc0000898.1_g000063 Rmu_sc0000903.1_g000008 Rmu_sc0000929.1_g000012 Rmu_sc0000929.1_g000019 Rmu_sc0000929.1_g000035 Rmu_sc0000929.1_g000036 Rmu_sc0001023.1_g000049 Rmu_sc0001699.1_g000009 Rmu_sc0001715.1_g000036 Rmu_sc0001895.1_g000003 Rmu_sc0002908.1_g000023 Rmu_sc0002990.1_g000008 Rmu_sc0002990.1_g000014 Rmu_sc0003151.1_g000001 Rmu_sc0003242.1_g000015 Rmu_sc0003242.1_g000025 Rmu_sc0003242.1_g000030 Rmu_sc0003539.1_g000012 Rmu_sc0004283.1_g000002 Rmu_sc0004283.1_g000009 Rmu_sc0004283.1_g000019 Rmu_sc0004283.1_g000032 Rmu_sc0004283.1_g000033 Rmu_sc0004283.1_g000046 Rmu_sc0004283.1_g000065 Rmu_sc0004516.1_g000003 Rmu_sc0005187.1_g000002 Rmu_sc0007010.1_g000007 Rmu_sc0007102.1_g000003 Rmu_sc0007109.1_g000006 Rmu_sc0007309.1_g000001 Rmu_sc0007415.1_g000036 Rmu_sc0007415.1_g000037 Rmu_sc0007415.1_g000053 Rmu_sc0009151.1_g000002 Rmu_sc0009639.1_g000006 Rmu_sc0009639.1_g000007 Rmu_sc0009975.1_g000001 Rmu_sc0009975.1_g000009 Rmu_sc0011398.1_g000002 Rmu_sc0011941.1_g000002 Rmu_sc0011941.1_g000006 Rmu_sc0011941.1_g000023 Rmu_sc0011941.1_g000024 Rmu_sc0021845.1_g000001 Rmu_sc0042747.1_g000002 Rmu_ssc0000303.1_g000010 Rmu_ssc0000400.1_g000092
rosa_roxburghii Rroxscaffold_1G00040190 Rroxscaffold_1G00040920 Rroxscaffold_1G00041140 Rroxscaffold_1G00060620 Rroxscaffold_1G00062230 Rroxscaffold_1G00065090 Rroxscaffold_1G00065120 Rroxscaffold_1G00065130 Rroxscaffold_1G00065220 Rroxscaffold_2G00128280 Rroxscaffold_2G00129610 Rroxscaffold_2G00130000 Rroxscaffold_2G00130020 Rroxscaffold_2G00130030 Rroxscaffold_2G00130080 Rroxscaffold_2G00130100 Rroxscaffold_3G00246100 Rroxscaffold_5G00347320 Rroxscaffold_5G00347770 Rroxscaffold_5G00347790 Rroxscaffold_5G00347810 Rroxscaffold_7G00191040
rosa_rugosa Rorug02G0188200 Rorug02G0188400 Rorug02G0188600 Rorug02G0188600 Rorug02G0188900 Rorug02G0189000 Rorug02G0189000 Rorug02G0189400 Rorug02G0190000 Rorug02G0190100 Rorug04G0037000 Rorug04G0040600 Rorug04G0040700 Rorug04G0453900 Rorug04G0454000 Rorug04G0455300 Rorug04G0455500 Rorug04G0455600 Rorug04G0456400 Rorug04G0456500 Rorug04G0456500 Rorug04G0456500 Rorug04G0458500 Rorug05G0017500 Rorug05G0030700 Rorug05G0030700 Rorug05G0183800 Rorug05G0185200 Rorug05G0198700 Rorug05G0584300 Rorug06G0110500 Rorug07G0141000 Rorug07G0213100
rosa_samantha Rh1DG042100 Rh1DG069600 Rh2AG242900 Rh2AG243800 Rh2AG244400 Rh2AG244700 Rh2AG245000 Rh2AG245200 Rh2AG245500 Rh2AG245700 Rh2AG245800 Rh2AG246000 Rh2AG246300 Rh2AG246600 Rh2AG246700 Rh2AG246900 Rh2AG247100 Rh4BG110700 Rh4CG124800 Rh4CG125200 Rh4DG106800 Rh4DG110400 Rh4DG110700 Rh4DG110900 Rh5CG096000 Rh5CG309200 Rh5DG082300 Rh5DG082900 Rh5DG083000 Rh5DG085700 Rh5DG284600 Rh5DG298400 Rh6AG015900 Rh6AG217100 Rh6CG227200 Rh6DG217700 Rh6DG218500 Rh7BG268200 Rh7DG280500
rosa_wichuraiana Rw0G000200 Rw0G001440 Rw0G005670 Rw0G009590 Rw0G011250 Rw0G014650 Rw0G017420 Rw0G017500 Rw0G017870 Rw0G019090 Rw0G019490 Rw1G005510 Rw2G018990 Rw2G019060 Rw2G019110 Rw2G019120 Rw2G019160 Rw2G019200 Rw2G019430 Rw2G029540 Rw3G025270 Rw4G008870 Rw4G009440 Rw4G009450 Rw4G009470 Rw4G009490 Rw4G009530 Rw4G009540 Rw4G009570 Rw5G007640 Rw5G007650 Rw5G010730 Rw5G025450 Rw5G025460 Rw5G032390 Rw5G032420 Rw6G001520 Rw6G015380 Rw6G018950 Rw7G023670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 1 cut(s) 260
AclWI GGATC 3 cut(s) 312, 447, 460
AcsI RAATTY 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 107, 135
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 449
AluBI AGCT 2 cut(s) 229, 356
AluI AGCT 2 cut(s) 229, 356
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 2 cut(s) 164, 343
Alw44I GTGCAC 1 cut(s) 6
AlwI GGATC 3 cut(s) 312, 447, 460
ApaLI GTGCAC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 164, 343
BfaI CTAG 1 cut(s) 353
BglII AGATCT 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 99, 454
BmsI GCATC 3 cut(s) 36, 241, 268
BpmI CTGGAG 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 135
Bse8I GATNNNNATC 1 cut(s) 457
BseGI GGATG 2 cut(s) 145, 283
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 107, 135
BseRI GAGGAG 3 cut(s) 63, 314, 437
BseSI GKGCMC 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 107, 135
BsmAI GTCTC 2 cut(s) 164, 343
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 201, 304, 452
BspACI CCGC 1 cut(s) 260
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 99, 454
BspPI GGATC 3 cut(s) 312, 447, 460
BssMI GATC 3 cut(s) 201, 304, 452
Bst6I CTCTTC 3 cut(s) 127, 378, 447
BstAPI GCANNNNNTGC 1 cut(s) 14
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 2 cut(s) 145, 283
BstKTI GATC 3 cut(s) 204, 307, 455
BstMAI GTCTC 2 cut(s) 164, 343
BstMBI GATC 3 cut(s) 201, 304, 452
BstMWI GCNNNNNNNGC 2 cut(s) 14, 368
BstNSI RCATGY 1 cut(s) 14
BstPI GGTNACC 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 201, 452
BstYI RGATCY 2 cut(s) 201, 452
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 145, 283
CciI TCATGA 1 cut(s) 307
CviAII CATG 3 cut(s) 11, 70, 308
CviJI RGCY 6 cut(s) 98, 190, 229, 356, 407, 438
CviKI_1 RGCY 6 cut(s) 98, 190, 229, 356, 407, 438
DpnI GATC 3 cut(s) 203, 306, 454
DpnII GATC 3 cut(s) 201, 304, 452
DraI TTTAAA 1 cut(s) 225
Eam1104I CTCTTC 3 cut(s) 127, 378, 447
EarI CTCTTC 3 cut(s) 127, 378, 447
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
FaeI CATG 3 cut(s) 14, 73, 311
FatI CATG 3 cut(s) 10, 69, 307
FokI GGATG 2 cut(s) 152, 290
FspBI CTAG 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 84
Hin1II CATG 3 cut(s) 14, 73, 311
HinfI GANTC 4 cut(s) 53, 61, 374, 458
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 2 cut(s) 101, 308
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 110, 177
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 4 cut(s) 8, 239, 254, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 368
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 3 cut(s) 14, 73, 311
Kzo9I GATC 3 cut(s) 201, 304, 452
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 114, 142, 195, 240, 393
LweI GCATC 3 cut(s) 36, 241, 268
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 124
MalI GATC 3 cut(s) 203, 306, 454
MboI GATC 3 cut(s) 201, 304, 452
MboII GAAGA 5 cut(s) 144, 196, 395, 434, 437
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 2 cut(s) 201, 452
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 192, 241
MlyI GAGTC 2 cut(s) 55, 368
MseI TTAA 2 cut(s) 224, 267
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 14, 368
NdeII GATC 3 cut(s) 201, 304, 452
NlaIII CATG 3 cut(s) 14, 73, 311
NlaIV GGNNCC 2 cut(s) 99, 454
NspI RCATGY 1 cut(s) 14
PagI TCATGA 1 cut(s) 307
PciI ACATGT 1 cut(s) 10
PfeI GAWTC 2 cut(s) 53, 458
PflMI CCANNNNNTGG 1 cut(s) 107
PleI GAGTC 2 cut(s) 55, 368
PpsI GAGTC 2 cut(s) 55, 368
PscI ACATGT 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 99, 454
PsuI RGATCY 2 cut(s) 201, 452
SaqAI TTAA 2 cut(s) 224, 267
Sau3AI GATC 3 cut(s) 201, 304, 452
SchI GAGTC 2 cut(s) 55, 368
SduI GDGCHC 1 cut(s) 10
SetI ASST 4 cut(s) 231, 358, 419, 429
SfaNI GCATC 3 cut(s) 36, 241, 268
Sse9I AATT 2 cut(s) 192, 241
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 353
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 64, 431
TasI AATT 2 cut(s) 192, 241
TfiI GAWTC 2 cut(s) 53, 458
Tru1I TTAA 2 cut(s) 224, 267
Tru9I TTAA 2 cut(s) 224, 267
TspDTI ATGAA 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 107
VneI GTGCAC 1 cut(s) 6
XapI RAATTY 1 cut(s) 241
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.