FvH4_1g01230

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000035
Physical Location & Seq
Reverse (-)
617829 .. 621914
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01230.t1

Sequence Viewer

Length: 3264 bp
ATGGCTCTATTCCGAGGTCACAAGCCCTTGCTTTTCAAATATACTACTTCTCCTTCTGGATTTACTTATGACATGTTCTTGAGCTTTAGAGGGAAAGATACTCGGAAGAATTTTACTGGTCACCTCTACACTGCCTTGGTCAACGCCGGATATCGTACTTTCCTGGATGACCCTGAACTTGAGAGAGGGGAAAATATCAAGGAAAAGCTTGAGAATGCCATTCAACAGTCTCGGAGTTCTGTGATTGTGTTTTCAGAAGACTACACCTCTTCCAGATGGTGTCTGGACGAGCTTGTAATGATCCTTGAACGCAAGAGGACCTCTGATCATGCCGTGTTACCGGTCTTCTACAAAGTTGATCCATCTGAAGTGAGGAAGCAGGCAAAAAGTCTTGCCGGTGTTCGTAAATACCATGAAATTCAATCCTCGGAGAAGTTGAATGAATGGCGGGCAGCACTTGGGGAAGTGGCAGATCTAGCAGGCATGGTCTCAGAAAATGAAGCCGATGGGCACGAGGCAAAGTTCATCCAAAAAATTGTTGCAGTGATTCAAAAGAAGCTACCTCTTGTCAGTCATGTGCCCCTCATCCATGTCCAGAAGGAATTAGAGGATAAGTTATTATCTGTTAACCCTGTTCTTGATGTTGCCGAGGGGAAGCAATTGCAATTCCAAACAAGTGTGAAGCCATGGCTCCATAAGCTTAAAGAAGTTGTCTACGAGGCTGAGGACCTGTTGCAGGAGATAAATACAGAAGTTCTGAGGCAAAAGTTGGAACCTGAATCTGGAAGTAGTAAGAGTCATGGACAAGAGCTCATCTCTAGTCCTCCATCTAATGCTTTTGACTCGGCTTTTATACACCCAAAGGTAGAGGAGATTCTTAACAGACTAGACTGCATTATGGAGGGGAGAAGACTTGTCTTGGGTATGGAAGCAAGTGCTGGATACCGGGTATCACAAACAATATCTTCAACTTCTTTGGTAGAAGAGTGTGTGTACGAAAGAGATGAGGAAAAGGAGACACTTGTTAGATTGTTGGTATCAGATGATGAGAGTGGCGATAAGATAGGTGTGATTCCTATTGTGGGCATGGGTGGGATTGGGAAAACCACCCTTGCTCAGTTTCTATACAATGATGTTACAGTCAGACAACATTTTGACCTCCAAGCATGGGTTTGCGTTTCAAAAGAGTTTGATGTTCTGAGGATTTCACAACACATTTATGAGTCACTCACCTCTAAAGCTTGCCAAATCACAAACCTTGCTCTGCTTCAATCAAAGTTGAAGGCAACTGTGATGGGGAAAAGGTTCTTCTTTGTTCTTGATGACATATGGAACAGGAATTATAACCAGTTGGAATCCTTAAAGCGTCCCCTCGAGTCTGGAGCACATGGAAGTAAGATTATTGTCACTACACGCAATGAGGATGTTGCAAGTATGATGGGTACTCTTTCACCTCAACCGGACTGTCTAAAGCCAATATCTGAGGAAGATGGCTGGTTGTTATTTGAAAAACATGCCTTCAGAAGTAGAGGAGTTTGTGGACAATCACAGCTTGAAGAGATAGGAAGACAAATTGTCAGAAAGTGTAATGGCCTTCCGTTGGCCCTTAAATCCCTTGGGGGTCTCTTATGTTCTAAACTACAGTCTGATGAATGGGAAAGCATATTGGACAGTGAGATGTGGGAATTGCCACAGGAGGAGAGTGACATTCTGCCGTCGCTTTGGTTGAGCTATGTGCATTTGCCTCCACATCTCAAGCGCTGTTTTAGCTACTGTTCGATATTTCCCAAAAACTATCGACTACAAAAATCAGAGCTGGTTTCCTTGTGGAAGGCCCAAGGTTTCTTGCAACCCAAAAAGAAGAAAATAGAAGAAAAAATTGGGGAAGAGTACTTCAATGATCTAATCTCAAGGTCATTTTTCCAGCGTTCAACAAGTTCTGAACACTTTATCATGCATGACCTTATCAATGATCTAGCAAACTTTGTATCTGGAGAATTTTGTGTCAGACGGGAGGACAGTGAATTACCCAACATATTGAGGAAGACTCGTCATTTCTCATATATTGAGACAAATGGTGATAGCTTTGCAAAACTTGAAGCTATGCAAAACTTGAAGCTATACGTGAAGCTAAATATTTGCGCACTCTTCTACCTCTACCTAAATATCGATTCTATCTGGGGACTTTCTATAAAATGGAATTCCAAGAAGTACTATATGAGGCACCTGGACATGTCTGAAACTACCATCAGAAAGTTACCTGATACTATTTGTACTTTGTATAATTTGCAAACATTACTGTTGTGCAAGTGTCAACGTCTTACAGCACTGCCAAGCAACCTGGGACGATTGATCTACTTGAGCCATCTGGATATTGAAGGTACAAAGATAGAAAAGATGCCACCACGTATGGGCGATCTCAAGGATCTGCAGATGTTAACCGATTTTGTGCTGGACAAGTATACCGACGACCATAATTCTTTAGAGCTCAAGAAGCTTCAAAAATTACATGGAACGCTTTGTATTTCAGGGCTTTCGAAAGTTGTAAATGGCAGGGCTTTGGTGGCTGACATTGTGAGGGACAAAGAGTTTCTTATTGGATTAATTTTGAAATGGGATTATATTTGTCACAAAGACGATATGGTGAAACAAATAGAAGCGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAGAGGCTTACAATAAGTGGTTATGGAGGCCAGGTGTTTCCAGGTTGGTCAGGATATTATTTTTCCTCTGCTCTTGTTTATCTTCATCTTGTTGATTGTGTGAATTGTATCGCCTTGCCACCATTGGGACAGTTACCTTCCCTCAGTGAGCTTCATATTTGTGGGGTACGCGAAGTGGTGTCCATAGGTTCTGAATTCTATTATGGTGATGGCAATTGTGTGAATAAACCATTTAGATGTCTACGCTCTTTAAAATTTGAAAACATGGGAGGGTGGAAAGAATGGTGTTATGTTGGAGGCGACGATAATGAAGGTGGTGTTTTTCCTGAACTTGTTCAACTTCATATATCAGCCTGTCCCATTCTTACTGGGAGATTAGCATTAGACAGTTTCCCGATGCTGAAAGAGGTCGACTTGAAGAATACTGAACTATCATCACTAGTCACTAGTTCACCGGACTCTAAACTCTTAAACCTGGAAAGCTTGCTGTTAAAGTGGTGTCCGAATATTGTATCTTTTCCTGATGGAGGGTTGAATGCCCAAGTTAAGGACTCTAAAGATAGTGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1088

Amino Acids

123.57

Weight (kDa)

6.11

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 187 5.8e-46 TIR domain
TIR_2 PF13676 26 - 123 2e-17 TIR domain
Rx_N PF18052 175 - 262 7.3e-13 Rx N-terminal domain
NB-ARC PF00931 337 - 509 5.5e-36 NB-ARC domain
WHD_DRP PF23559 594 - 660 1.1e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 736 - 1036 4.4e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 829 - 951 1.1e-26 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1344
Acc16I TGCGCA 1 cut(s) 2143
AccB1I GGYRCC 1 cut(s) 2223
AccI GTMKAC 4 cut(s) 714, 2462, 2932, 3102
AccII CGCG 1 cut(s) 2862
AciI CCGC 1 cut(s) 448
AclWI GGATC 3 cut(s) 295, 353, 2433
AcsI RAATTY 6 cut(s) 109, 417, 1997, 2200, 2885, 2945
AcuI CTGAAG 2 cut(s) 387, 1504
AfaI GTAC 8 cut(s) 157, 995, 1444, 1892, 2213, 2275, 2383, 2859
AfeI AGCGCT 2 cut(s) 1760, 2661
AflIII ACRYGT 2 cut(s) 72, 2232
AgeI ACCGGT 1 cut(s) 340
AhdI GACNNNNNGTC 1 cut(s) 1574
AhlI ACTAGT 2 cut(s) 3130, 3137
AjnI CCWGG 7 cut(s) 162, 2226, 2340, 2688, 2721, 2731, 3165
AjuI GAANNNNNNNTTGG 2 cut(s) 1863, 1895
Alw21I GWGCWC 3 cut(s) 813, 1387, 2490
Alw26I GTCTC 5 cut(s) 234, 493, 1010, 1628, 2063
AlwI GGATC 3 cut(s) 295, 353, 2433
Ama87I CYCGRG 1 cut(s) 1373
Aor51HI AGCGCT 2 cut(s) 1760, 2661
AoxI GGCC 4 cut(s) 1591, 1602, 1833, 2719
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 6 cut(s) 109, 417, 1997, 2200, 2885, 2945
AseI ATTAAT 1 cut(s) 2603
AsiGI ACCGGT 1 cut(s) 340
Asp700I GAANNNNTTC 2 cut(s) 1304, 3024
AspLEI GCGC 3 cut(s) 1761, 2144, 2662
AspS9I GGNCC 4 cut(s) 318, 727, 1603, 1834
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 8 cut(s) 113, 1222, 1443, 2090, 2656, 2672, 2909, 3135
AsuII TTCGAA 1 cut(s) 2537
AvaI CYCGRG 1 cut(s) 1373
AvaII GGWCC 2 cut(s) 318, 727
BaeGI GKGCMC 2 cut(s) 513, 582
BanI GGYRCC 1 cut(s) 2223
BanII GRGCYC 2 cut(s) 813, 2490
BauI CACGAG 1 cut(s) 512
BbsI GAAGAC 5 cut(s) 264, 337, 916, 1573, 2051
Bbv12I GWGCWC 3 cut(s) 813, 1387, 2490
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 1 cut(s) 464
BceAI ACGGC 2 cut(s) 317, 1699
BciT130I CCWGG 7 cut(s) 164, 2228, 2342, 2690, 2723, 2733, 3167
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 5 cut(s) 234, 493, 1010, 1628, 2063
BcuI ACTAGT 2 cut(s) 3130, 3137
BfaI CTAG 6 cut(s) 476, 819, 887, 1976, 3131, 3138
BfmI CTRYAG 2 cut(s) 1640, 2429
BfoI RGCGCY 2 cut(s) 1762, 2663
BfuI GTATCC 1 cut(s) 935
BglII AGATCT 1 cut(s) 472
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
BmcAI AGTACT 2 cut(s) 1892, 2213
Bme1390I CCNGG 8 cut(s) 164, 947, 2228, 2342, 2690, 2723, 2733, 3167
Bme18I GGWCC 2 cut(s) 318, 727
BmeRI GACNNNNNGTC 1 cut(s) 1574
BmeT110I CYCGRG 1 cut(s) 1373
BmgT120I GGNCC 4 cut(s) 318, 727, 1603, 1834
BmiI GGNNCC 3 cut(s) 692, 774, 2225
BmrFI CCNGG 8 cut(s) 164, 947, 2228, 2342, 2690, 2723, 2733, 3167
BmrI ACTGGG 1 cut(s) 3069
BmsI GCATC 2 cut(s) 2388, 3078
BmuI ACTGGG 1 cut(s) 3069
BpiI GAAGAC 5 cut(s) 264, 337, 916, 1573, 2051
BplI GAGNNNNNCTC 4 cut(s) 800, 832, 2032, 2064
BpmI CTGGAG 3 cut(s) 1401, 2013, 2711
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 1 cut(s) 2537
BpuEI CTTGAG 9 cut(s) 100, 200, 230, 1739, 1894, 2380, 2405, 2474, 2684
BpuMI CCSGG 1 cut(s) 947
Bsa29I ATCGAT 1 cut(s) 2169
BsaAI YACGTR 2 cut(s) 2125, 2408
BsaI GGTCTC 2 cut(s) 493, 1628
BsaJI CCNNGG 8 cut(s) 13, 135, 426, 648, 686, 1615, 1837, 2341
BsaWI WCCGGW 3 cut(s) 340, 1459, 3145
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 2709, 2739
Bse118I RCCGGY 2 cut(s) 340, 395
Bse1I ACTGG 3 cut(s) 121, 1348, 3064
Bse3DI GCAATG 1 cut(s) 1423
BseBI CCWGG 7 cut(s) 164, 2228, 2342, 2690, 2723, 2733, 3167
BseCI ATCGAT 1 cut(s) 2169
BseDI CCNNGG 8 cut(s) 13, 135, 426, 648, 686, 1615, 1837, 2341
BseGI GGATG 4 cut(s) 172, 525, 585, 1429
BseMI GCAATG 1 cut(s) 1423
BseMII CTCAG 7 cut(s) 504, 714, 749, 1130, 1190, 1473, 2848
BseNI ACTGG 3 cut(s) 121, 1348, 3064
BseRI GAGGAG 3 cut(s) 884, 1545, 1712
BseSI GKGCMC 2 cut(s) 513, 582
BseXI GCAGC 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 2862
BshFI GGCC 4 cut(s) 1593, 1604, 1835, 2721
BshNI GGYRCC 1 cut(s) 2223
BshTI ACCGGT 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 2169
BsiHKAI GWGCWC 3 cut(s) 813, 1387, 2490
BsiHKCI CYCGRG 1 cut(s) 1373
BsiSI CCGG 6 cut(s) 147, 341, 396, 946, 1460, 3146
BslFI GGGAC 6 cut(s) 1353, 2196, 2358, 2594, 2832, 3033
BsmAI GTCTC 5 cut(s) 234, 493, 1010, 1628, 2063
BsmFI GGGAC 6 cut(s) 1353, 2196, 2358, 2594, 2832, 3033
BsmI GAATGC 2 cut(s) 220, 3232
BsnI GGCC 4 cut(s) 1593, 1604, 1835, 2721
Bso31I GGTCTC 2 cut(s) 493, 1628
BsoBI CYCGRG 1 cut(s) 1373
Bsp119I TTCGAA 1 cut(s) 2537
Bsp1286I GDGCHC 5 cut(s) 513, 582, 813, 1387, 2490
Bsp143I GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
Bsp19I CCATGG 1 cut(s) 686
BspACI CCGC 1 cut(s) 448
BspANI GGCC 4 cut(s) 1593, 1604, 1835, 2721
BspCNI CTCAG 7 cut(s) 503, 715, 750, 1129, 1191, 1474, 2847
BspDI ATCGAT 1 cut(s) 2169
BspFNI CGCG 1 cut(s) 2862
BspLI GGNNCC 3 cut(s) 692, 774, 2225
BspMAI CTGCAG 1 cut(s) 2433
BspPI GGATC 3 cut(s) 295, 353, 2433
BspT104I TTCGAA 1 cut(s) 2537
BspT107I GGYRCC 1 cut(s) 2223
BspTNI GGTCTC 2 cut(s) 493, 1628
BsrDI GCAATG 1 cut(s) 1423
BsrFI RCCGGY 2 cut(s) 340, 395
BsrI ACTGG 3 cut(s) 121, 1348, 3064
BssAI RCCGGY 2 cut(s) 340, 395
BssECI CCNNGG 8 cut(s) 13, 135, 426, 648, 686, 1615, 1837, 2341
BssMI GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
BssNAI GTATAC 1 cut(s) 2463
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 4 cut(s) 135, 686, 1615, 1837
Bst1107I GTATAC 1 cut(s) 2463
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 7 cut(s) 164, 2228, 2342, 2690, 2723, 2733, 3167
Bst6I CTCTTC 5 cut(s) 274, 978, 1551, 1881, 2153
BstBAI YACGTR 2 cut(s) 2125, 2408
BstBI TTCGAA 1 cut(s) 2537
BstC8I GCNNGC 5 cut(s) 381, 450, 481, 1243, 3176
BstDEI CTNAG 7 cut(s) 490, 723, 758, 1116, 1199, 1482, 2834
BstDSI CCRYGG 1 cut(s) 686
BstEII GGTNACC 1 cut(s) 119
BstENI CCTNNNNNAGG 2 cut(s) 734, 3216
BstF5I GGATG 4 cut(s) 172, 525, 585, 1429
BstFNI CGCG 1 cut(s) 2862
BstH2I RGCGCY 2 cut(s) 1762, 2663
BstHHI GCGC 3 cut(s) 1761, 2144, 2662
BstKTI GATC 9 cut(s) 303, 328, 361, 475, 1903, 1975, 2355, 2419, 2428
BstMAI GTCTC 5 cut(s) 234, 493, 1010, 1628, 2063
BstMBI GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
BstMWI GCNNNNNNNGC 6 cut(s) 476, 697, 1767, 2494, 2564, 2668
BstNI CCWGG 7 cut(s) 164, 2228, 2342, 2690, 2723, 2733, 3167
BstNSI RCATGY 3 cut(s) 76, 1517, 2236
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 8 cut(s) 162, 945, 2226, 2340, 2688, 2721, 2731, 3165
BstSFI CTRYAG 2 cut(s) 1640, 2429
BstSLI GKGCMC 2 cut(s) 513, 582
BstUI CGCG 1 cut(s) 2862
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 5 cut(s) 264, 337, 916, 1573, 2051
BstX2I RGATCY 2 cut(s) 472, 2425
BstYI RGATCY 2 cut(s) 472, 2425
BstZ17I GTATAC 1 cut(s) 2463
Bsu15I ATCGAT 1 cut(s) 2169
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 4 cut(s) 1593, 1604, 1835, 2721
BsuTUI ATCGAT 1 cut(s) 2169
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 4 cut(s) 172, 525, 585, 1429
BtsI GCAGTG 3 cut(s) 129, 549, 2327
BtsIMutI CAGTG 6 cut(s) 129, 549, 1678, 2026, 2327, 2842
Cac8I GCNNGC 5 cut(s) 381, 450, 481, 1243, 3176
CfoI GCGC 3 cut(s) 1761, 2144, 2662
Cfr10I RCCGGY 2 cut(s) 340, 395
Cfr13I GGNCC 4 cut(s) 318, 727, 1603, 1834
ClaI ATCGAT 1 cut(s) 2169
CseI GACGC 1 cut(s) 1355
Csp6I GTAC 8 cut(s) 156, 994, 1443, 1891, 2212, 2274, 2382, 2858
CspAI ACCGGT 1 cut(s) 340
CviQI GTAC 8 cut(s) 156, 994, 1443, 1891, 2212, 2274, 2382, 2858
DdeI CTNAG 7 cut(s) 490, 723, 758, 1116, 1199, 1482, 2834
DpnI GATC 9 cut(s) 302, 327, 360, 474, 1902, 1974, 2354, 2418, 2427
DpnII GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
DraI TTTAAA 1 cut(s) 2943
DriI GACNNNNNGTC 1 cut(s) 1574
Eam1104I CTCTTC 5 cut(s) 274, 978, 1551, 1881, 2153
Eam1105I GACNNNNNGTC 1 cut(s) 1574
EarI CTCTTC 5 cut(s) 274, 978, 1551, 1881, 2153
Ecl136II GAGCTC 2 cut(s) 811, 2488
Eco130I CCWWGG 4 cut(s) 135, 686, 1615, 1837
Eco24I GRGCYC 2 cut(s) 813, 2490
Eco31I GGTCTC 2 cut(s) 493, 1628
Eco32I GATATC 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 318, 727
Eco47III AGCGCT 2 cut(s) 1760, 2661
Eco53kI GAGCTC 2 cut(s) 811, 2488
Eco57I CTGAAG 2 cut(s) 387, 1504
Eco88I CYCGRG 1 cut(s) 1373
Eco91I GGTNACC 1 cut(s) 119
EcoICRI GAGCTC 2 cut(s) 811, 2488
EcoNI CCTNNNNNAGG 2 cut(s) 734, 3216
EcoO109I RGGNCCY 2 cut(s) 318, 727
EcoO65I GGTNACC 1 cut(s) 119
EcoRI GAATTC 2 cut(s) 2200, 2885
EcoRII CCWGG 7 cut(s) 162, 2226, 2340, 2688, 2721, 2731, 3165
EcoRV GATATC 1 cut(s) 152
EcoT14I CCWWGG 4 cut(s) 135, 686, 1615, 1837
EcoT22I ATGCAT 1 cut(s) 1959
EcoT38I GRGCYC 2 cut(s) 813, 2490
ErhI CCWWGG 4 cut(s) 135, 686, 1615, 1837
FalI AAGNNNNNCTT 2 cut(s) 2577, 2609
FaqI GGGAC 6 cut(s) 1353, 2196, 2358, 2594, 2832, 3033
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 1328
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 4 cut(s) 714, 2462, 2932, 3102
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 4 cut(s) 179, 512, 572, 1436
FriOI GRGCYC 2 cut(s) 813, 2490
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 6 cut(s) 476, 819, 887, 1976, 3131, 3138
FspI TGCGCA 1 cut(s) 2143
GlaI GCGC 3 cut(s) 1760, 2143, 2661
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 3 cut(s) 1401, 2013, 2711
HaeII RGCGCY 2 cut(s) 1762, 2663
HaeIII GGCC 4 cut(s) 1593, 1604, 1835, 2721
HapII CCGG 6 cut(s) 147, 341, 396, 946, 1460, 3146
HgaI GACGC 1 cut(s) 1355
HhaI GCGC 3 cut(s) 1761, 2144, 2662
Hin6I GCGC 3 cut(s) 1759, 2142, 2660
HinP1I GCGC 3 cut(s) 1759, 2142, 2660
HincII GTYRAC 5 cut(s) 142, 628, 2315, 2439, 3103
HindII GTYRAC 5 cut(s) 142, 628, 2315, 2439, 3103
HindIII AAGCTT 5 cut(s) 206, 698, 1239, 2495, 3172
HpaI GTTAAC 2 cut(s) 628, 2439
HpaII CCGG 6 cut(s) 147, 341, 396, 946, 1460, 3146
HphI GGTGA 8 cut(s) 113, 1222, 1443, 2090, 2656, 2672, 2909, 3135
Hpy99I CGWCG 3 cut(s) 1720, 2471, 2996
HpyAV CCTTC 9 cut(s) 63, 592, 1276, 1528, 1604, 1825, 2372, 2838, 2996
HpyCH4IV ACGT 3 cut(s) 2124, 2317, 2407
HpyF10VI GCNNNNNNNGC 6 cut(s) 476, 697, 1767, 2494, 2564, 2668
HpyF3I CTNAG 7 cut(s) 490, 723, 758, 1116, 1199, 1482, 2834
HpySE526I ACGT 3 cut(s) 2124, 2317, 2407
HspAI GCGC 3 cut(s) 1759, 2142, 2660
Ksp22I TGATCA 1 cut(s) 325
KspAI GTTAAC 2 cut(s) 628, 2439
Kzo9I GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
LmnI GCTCC 3 cut(s) 696, 1382, 2676
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 2 cut(s) 2388, 3078
MaeI CTAG 6 cut(s) 476, 819, 887, 1976, 3131, 3138
MaeII ACGT 3 cut(s) 2124, 2317, 2407
MalI GATC 9 cut(s) 302, 327, 360, 474, 1902, 1974, 2354, 2418, 2427
MboI GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
MfeI CAATTG 2 cut(s) 659, 2905
MflI RGATCY 2 cut(s) 472, 2425
MhlI GDGCHC 5 cut(s) 513, 582, 813, 1387, 2490
MlyI GAGTC 7 cut(s) 805, 836, 1232, 1385, 2041, 3143, 3236
MmeI TCCRAC 4 cut(s) 750, 1332, 2698, 2965
Mph1103I ATGCAT 1 cut(s) 1959
MroXI GAANNNNTTC 2 cut(s) 1304, 3024
MslI CAYNNNNRTG 3 cut(s) 1218, 2850, 2926
MspI CCGG 6 cut(s) 147, 341, 396, 946, 1460, 3146
MspR9I CCNGG 8 cut(s) 164, 947, 2228, 2342, 2690, 2723, 2733, 3167
MunI CAATTG 2 cut(s) 659, 2905
Mva1269I GAATGC 2 cut(s) 220, 3232
MvaI CCWGG 7 cut(s) 164, 2228, 2342, 2690, 2723, 2733, 3167
MvnI CGCG 1 cut(s) 2862
MwoI GCNNNNNNNGC 6 cut(s) 476, 697, 1767, 2494, 2564, 2668
NciI CCSGG 1 cut(s) 947
NcoI CCATGG 1 cut(s) 686
NdeI CATATG 1 cut(s) 1328
NdeII GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
NlaIV GGNNCC 3 cut(s) 692, 774, 2225
NmeAIII GCCGAG 2 cut(s) 673, 824
NmuCI GTSAC 7 cut(s) 17, 119, 1224, 1405, 1703, 2627, 3133
NsbI TGCGCA 1 cut(s) 2143
NsiI ATGCAT 1 cut(s) 1959
NspI RCATGY 3 cut(s) 76, 1517, 2236
NspV TTCGAA 1 cut(s) 2537
PaeR7I CTCGAG 1 cut(s) 1373
PciI ACATGT 2 cut(s) 72, 2232
PctI GAATGC 2 cut(s) 220, 3232
PdmI GAANNNNTTC 2 cut(s) 1304, 3024
PfeI GAWTC 6 cut(s) 547, 779, 874, 1072, 1355, 2171
PfoI TCCNGGA 1 cut(s) 162
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 7 cut(s) 804, 836, 1231, 1384, 2041, 3143, 3236
PpsI GAGTC 7 cut(s) 804, 836, 1231, 1384, 2041, 3143, 3236
Ppu21I YACGTR 2 cut(s) 2125, 2408
PpuMI RGGWCCY 2 cut(s) 318, 727
PscI ACATGT 2 cut(s) 72, 2232
PshBI ATTAAT 1 cut(s) 2603
PsiI TTATAA 1 cut(s) 1344
Psp124BI GAGCTC 2 cut(s) 813, 2490
Psp5II RGGWCCY 2 cut(s) 318, 727
Psp6I CCWGG 7 cut(s) 162, 2226, 2340, 2688, 2721, 2731, 3165
PspEI GGTNACC 1 cut(s) 119
PspGI CCWGG 7 cut(s) 162, 2226, 2340, 2688, 2721, 2731, 3165
PspN4I GGNNCC 3 cut(s) 692, 774, 2225
PspPI GGNCC 4 cut(s) 318, 727, 1603, 1834
PspPPI RGGWCCY 2 cut(s) 318, 727
PspXI VCTCGAGB 1 cut(s) 1373
PstI CTGCAG 1 cut(s) 2433
PsuI RGATCY 2 cut(s) 472, 2425
RsaI GTAC 8 cut(s) 157, 995, 1444, 1892, 2213, 2275, 2383, 2859
RsaNI GTAC 8 cut(s) 156, 994, 1443, 1891, 2212, 2274, 2382, 2858
RseI CAYNNNNRTG 3 cut(s) 1218, 2850, 2926
SacI GAGCTC 2 cut(s) 813, 2490
SalI GTCGAC 1 cut(s) 3101
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 9 cut(s) 300, 325, 358, 472, 1900, 1972, 2352, 2416, 2425
Sau96I GGNCC 4 cut(s) 318, 727, 1603, 1834
ScaI AGTACT 2 cut(s) 1892, 2213
SchI GAGTC 7 cut(s) 805, 836, 1232, 1385, 2041, 3143, 3236
ScrFI CCNGG 8 cut(s) 164, 947, 2228, 2342, 2690, 2723, 2733, 3167
SduI GDGCHC 5 cut(s) 513, 582, 813, 1387, 2490
SfaNI GCATC 2 cut(s) 2388, 3078
SfcI CTRYAG 2 cut(s) 1640, 2429
Sfr274I CTCGAG 1 cut(s) 1373
SfuI TTCGAA 1 cut(s) 2537
SinI GGWCC 2 cut(s) 318, 727
SlaI CTCGAG 1 cut(s) 1373
SmiMI CAYNNNNRTG 3 cut(s) 1218, 2850, 2926
SpeI ACTAGT 2 cut(s) 3130, 3137
SsiI CCGC 1 cut(s) 448
SspI AATATT 2 cut(s) 2137, 3199
SspMI CTAG 6 cut(s) 476, 819, 887, 1976, 3131, 3138
SstI GAGCTC 2 cut(s) 813, 2490
StyD4I CCNGG 8 cut(s) 162, 945, 2226, 2340, 2688, 2721, 2731, 3165
StyI CCWWGG 4 cut(s) 135, 686, 1615, 1837
TaiI ACGT 3 cut(s) 2127, 2320, 2410
TaqI TCGA 6 cut(s) 1374, 1778, 1798, 2169, 2537, 3102
TatI WGTACW 3 cut(s) 1890, 2211, 2273
TfiI GAWTC 6 cut(s) 547, 779, 874, 1072, 1355, 2171
TscAI CASTG 6 cut(s) 136, 549, 1678, 2026, 2334, 2842
TseFI GTSAC 7 cut(s) 17, 119, 1224, 1405, 1703, 2627, 3133
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 7 cut(s) 17, 119, 1224, 1405, 1703, 2627, 3133
TspDTI ATGAA 9 cut(s) 429, 456, 513, 514, 1665, 2765, 2834, 3015, 3023
TspGWI ACGGA 1 cut(s) 1587
TspRI CASTG 6 cut(s) 136, 549, 1678, 2026, 2334, 2842
VpaK11BI GGWCC 2 cut(s) 318, 727
VspI ATTAAT 1 cut(s) 2603
XagI CCTNNNNNAGG 2 cut(s) 734, 3216
XapI RAATTY 6 cut(s) 109, 417, 1997, 2200, 2885, 2945
XceI RCATGY 3 cut(s) 76, 1517, 2236
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 1373
XmiI GTMKAC 4 cut(s) 714, 2462, 2932, 3102
XmnI GAANNNNTTC 2 cut(s) 1304, 3024
XspI CTAG 6 cut(s) 476, 819, 887, 1976, 3131, 3138
ZrmI AGTACT 2 cut(s) 1892, 2213
Zsp2I ATGCAT 1 cut(s) 1959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.