Rorug01G0025400

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
4115008 .. 4118729
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0025400.1

Sequence Viewer

Length: 1980 bp
ATGATGAGGTTGGGGATAATCATTGGGGCTTCAGCAATATTATTGTGGGAATACTTTGAAAATAAGAGACCCACACCATCATCATCATCCCCTGAAACGCCACCTCAGCGGCAGCCAACGTCATCTAATTCTAAACCACATCCAGCCTCCGCAGAACCCCCACCATATTATTCTAAACCATCTCCATCTCCATCTTCCCCGAAACCCCCACCAGCTTCTTCTAAACCACCTTCATCTAAACCACCTTCATCCCCAGCTTCTTCTCCCCCACCATATTCTTCTAAACCACCTTCATCCCCAGCTTCTTCTAAACCACCTTCATCTGCAGCTTCCCCACAACCCCCAGCATATTCTTCTAAACCACCTGCATCCCCAGCATGTTCTTCTAAACCACCTTCATCTCCAGTTTCCCCACAACCCCCAGAATATTCTTCTAAACCATCTTCATCTCCATCTTCCCCAAAACACCCTCCAGCACATTTTTCTATACCATCTCCATCTCCCCCAAAGTGCCCTCCTGTCTTTAAGTCAGTTCTACGCCCAGCCTCCTCTTCCTCAAATAATGATGATATAAGTCAAAACCAACAATATGGGAAGAGAACAGCTTATGTGTGTGTTGAAGAGGATCCATTACCTGTATTCATGATTCCTGAGGATGTCGAAGCCTTGATCAAGAAAGAAATTGCGCCCAAAGTTCTGAATCGCCCATTATCTCCCACAACATACAAGGACTACTTTGCCGCTCTCTTATATTCTGAAGATTTCTACTTGGAGAAATGGAGTGATTTCCTTTTGAAAGGTGTGACATTAGCGTTGGATGAAAGTTCAATTTATAAAAACCGGAAAAAGGAAGCACTTTATAAAAATCGGAAAAAGGAAGATAAGGAAGACAAAACCTTTGTAGCATTTGAGCTTGATCGTGTTCCTGAGGAACGACCATTCCTCTTGTCAAGGGACTTGGTCCTTGCACGACCAGTGGGGAAGAGTTCTACTGAGCCCTTTAAGGGCCCCATCCATAAAGTTGTTGGGAGCAATCGCGTTTTGGTTGAATTTGAGGATGGCTTTTATTCTTATCATCATTCCAACAAAAAATATGATATCAGCTTCTCATACAATAGAGTTTGTTTGAAAAGAGCCCACCATGCAGTAAAAGCTGCATCAGATGCCTTGTTTCAGAACTTCCTCTTCCCTGACTGTGACTCACGAGCAAGCATTCCTGCTGCACCAGCTCAGCTTTCTACTACCTATCATAAGCTTGATCAAGAGCAACATTCTGCAGTCGGACATATCTTAAGGATTCAGGGCTCACCACCTTATGTAGTAACTGGTCCAGACTGTGAAGGCAAATCTTTTGCAAATTTAAGAGAACCTTCAAGAACTGGAGTGGTTGTTAGTGAAACAGTATACCAATTATGTCGGAAGTCACCAGAGTATCGCATTCTTATCTGTGCGCCTACTAACAGCTGCTGCGATATGCTGATGAGAAGCTTGGTGAAGGTGATTCCAGAGTCTACTATGTTTCGTGCCAATGCTGCATTCCGAGACAGAGATGAGGTACCTGAGGACATCCTCCGTTCATCCCTTTACAAAGAGTCTTGTTTTTCTTGTCCTGCAATAGAGAAACTCCGGGAATACAAGGTGATTTTCTCAACTTTCATGAGTAGCTTCCGACTACATGATAAAGGCATAGCTGCTGGACATTTTAGCCATATTTTTCTGGTGGATGCTTCATCTGCTATTGAGCCGGAAACATTGGTCGCCCTGACTAACTTTGCTGTCAAGGCCACTAGTGTTATAGTTACTGGTAATCATGGAAATAGTCCACTCTGGGTTCGCGCTGACATTGCAAGGAAAAAGGGACTCAAGATTTCATATTTTGAACGACTCTGCAAGCTCAGGCCATACAGAAGCCCCAGTCCAATGTTCATCACACAACTAGACCTGAACCAAAAGTCAGAGTACCAAACAAGACCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

659

Amino Acids

72.98

Weight (kDa)

9.22

Isoelectric Point (pI)

71.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 293 - 369 3.5e-09 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 834, 861
AarI CACCTGC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 373
Acc65I GGTACC 1 cut(s) 1555
AccB1I GGYRCC 1 cut(s) 1555
AccBSI CCGCTC 1 cut(s) 743
AccI GTMKAC 2 cut(s) 1404, 1511
AccII CGCG 2 cut(s) 1038, 1836
AciI CCGC 3 cut(s) 109, 150, 741
AclWI GGATC 2 cut(s) 620, 633
AcsI RAATTY 2 cut(s) 1049, 1357
AcuI CTGAAG 2 cut(s) 15, 777
AfaI GTAC 2 cut(s) 1557, 1961
AfiI CCNNNNNNNGG 2 cut(s) 847, 1004
AflII CTTAAG 1 cut(s) 1291
AgsI TTSAA 8 cut(s) 59, 620, 796, 828, 1049, 1129, 1374, 1880
AhlI ACTAGT 1 cut(s) 1787
AjuI GAANNNNNNNTTGG 2 cut(s) 1520, 1552
AloI GAACNNNNNNTCC 2 cut(s) 924, 956
Alw26I GTCTC 2 cut(s) 61, 1536
AlwI GGATC 2 cut(s) 620, 633
AlwNI CAGNNNCTG 1 cut(s) 1467
AoxI GGCC 3 cut(s) 1006, 1782, 1898
ApaI GGGCCC 1 cut(s) 1010
ApeKI GCWGC 8 cut(s) 112, 326, 1154, 1220, 1464, 1467, 1532, 1691
ApoI RAATTY 2 cut(s) 1049, 1357
ArsI GACNNNNNNTTYG 2 cut(s) 881, 913
Asp718I GGTACC 1 cut(s) 1555
AspLEI GCGC 3 cut(s) 688, 1453, 1838
AspS9I GGNCC 4 cut(s) 961, 1006, 1007, 1328
AsuC2I CCSGG 1 cut(s) 1628
AsuHPI GGTGA 5 cut(s) 1299, 1416, 1504, 1510, 1651
AvaII GGWCC 2 cut(s) 961, 1328
AxyI CCTNAGG 3 cut(s) 651, 927, 1560
BaeGI GKGCMC 2 cut(s) 515, 1010
BaeI ACNNNNGTAYC 2 cut(s) 1415, 1448
BamHI GGATCC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 1555
BanII GRGCYC 4 cut(s) 999, 1010, 1138, 1307
BauI CACGAG 1 cut(s) 1203
BbsI GAAGAC 1 cut(s) 894
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 8 cut(s) 124, 338, 1141, 1207, 1451, 1454, 1519, 1678
BclI TGATCA 2 cut(s) 669, 1258
BcnI CCSGG 1 cut(s) 1628
BcoDI GTCTC 2 cut(s) 61, 1536
BcuI ACTAGT 1 cut(s) 1787
BfaI CTAG 2 cut(s) 1788, 1937
BfmI CTRYAG 2 cut(s) 324, 1275
BfrI CTTAAG 1 cut(s) 1291
BfuAI ACCTGC 1 cut(s) 373
BlpI GCTNAGC 1 cut(s) 1230
Bme1390I CCNGG 1 cut(s) 1628
Bme18I GGWCC 2 cut(s) 961, 1328
BmgT120I GGNCC 4 cut(s) 961, 1006, 1007, 1328
BmiI GGNNCC 4 cut(s) 627, 1008, 1009, 1557
BmrFI CCNGG 1 cut(s) 1628
BmrI ACTGGG 1 cut(s) 1908
BmsI GCATC 4 cut(s) 377, 1153, 1166, 1714
BmuI ACTGGG 1 cut(s) 1908
BpiI GAAGAC 1 cut(s) 894
BpmI CTGGAG 3 cut(s) 387, 456, 1401
Bpu10I CCTNAGC 2 cut(s) 105, 1895
Bpu1102I GCTNAGC 1 cut(s) 1230
BpuEI CTTGAG 1 cut(s) 1847
BpuMI CCSGG 1 cut(s) 1628
BsaI GGTCTC 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 840
BsaXI ACNNNNNCTCC 2 cut(s) 1374, 1404
Bsc4I CCNNNNNNNGG 2 cut(s) 847, 1004
Bse1I ACTGG 6 cut(s) 404, 974, 1330, 1384, 1807, 1914
Bse21I CCTNAGG 3 cut(s) 651, 927, 1560
Bse3DI GCAATG 1 cut(s) 1842
BseLI CCNNNNNNNGG 2 cut(s) 847, 1004
BseMI GCAATG 1 cut(s) 1842
BseMII CTCAG 7 cut(s) 119, 642, 918, 984, 1244, 1551, 1909
BseNI ACTGG 6 cut(s) 404, 974, 1330, 1384, 1807, 1914
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 2 cut(s) 515, 1010
BseXI GCAGC 8 cut(s) 124, 338, 1141, 1207, 1451, 1454, 1519, 1678
BseYI CCCAGC 5 cut(s) 253, 298, 343, 373, 541
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 2 cut(s) 1038, 1836
BshFI GGCC 3 cut(s) 1008, 1784, 1900
BshNI GGYRCC 1 cut(s) 1555
BsiSI CCGG 3 cut(s) 841, 1627, 1745
BslFI GGGAC 2 cut(s) 968, 1872
BslI CCNNNNNNNGG 2 cut(s) 847, 1004
BsmAI GTCTC 2 cut(s) 61, 1536
BsmFI GGGAC 2 cut(s) 968, 1872
BsmI GAATGC 3 cut(s) 1212, 1437, 1535
BsnI GGCC 3 cut(s) 1008, 1784, 1900
Bso31I GGTCTC 1 cut(s) 61
Bsp120I GGGCCC 1 cut(s) 1006
Bsp1286I GDGCHC 5 cut(s) 515, 999, 1010, 1138, 1307
Bsp143I GATC 4 cut(s) 625, 669, 916, 1258
Bsp1720I GCTNAGC 1 cut(s) 1230
BspACI CCGC 3 cut(s) 109, 150, 741
BspANI GGCC 3 cut(s) 1008, 1784, 1900
BspCNI CTCAG 7 cut(s) 118, 643, 919, 985, 1243, 1552, 1908
BspFNI CGCG 2 cut(s) 1038, 1836
BspHI TCATGA 2 cut(s) 642, 1656
BspLI GGNNCC 4 cut(s) 627, 1008, 1009, 1557
BspMAI CTGCAG 2 cut(s) 328, 1279
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 2 cut(s) 620, 633
BspT107I GGYRCC 1 cut(s) 1555
BspTI CTTAAG 1 cut(s) 1291
BspTNI GGTCTC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 1842
BsrI ACTGG 6 cut(s) 404, 974, 1330, 1384, 1807, 1914
BssMI GATC 4 cut(s) 625, 669, 916, 1258
BssNAI GTATAC 1 cut(s) 1405
BssSI CACGAG 1 cut(s) 1203
Bst1107I GTATAC 1 cut(s) 1405
Bst2BI CACGAG 1 cut(s) 1203
Bst4CI ACNGT 3 cut(s) 1196, 1337, 1402
Bst6I CTCTTC 5 cut(s) 556, 590, 615, 977, 1190
BstAFI CTTAAG 1 cut(s) 1291
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstC8I GCNNGC 2 cut(s) 1210, 1892
BstDEI CTNAG 7 cut(s) 105, 651, 927, 993, 1230, 1560, 1895
BstFNI CGCG 2 cut(s) 1038, 1836
BstHHI GCGC 3 cut(s) 688, 1453, 1838
BstKTI GATC 4 cut(s) 628, 672, 919, 1261
BstMAI GTCTC 2 cut(s) 61, 1536
BstMBI GATC 4 cut(s) 625, 669, 916, 1258
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 1626
BstSFI CTRYAG 2 cut(s) 324, 1275
BstSLI GKGCMC 2 cut(s) 515, 1010
BstUI CGCG 2 cut(s) 1038, 1836
BstV1I GCAGC 8 cut(s) 124, 338, 1141, 1207, 1451, 1454, 1519, 1678
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 1 cut(s) 625
BstZ17I GTATAC 1 cut(s) 1405
Bsu36I CCTNAGG 3 cut(s) 651, 927, 1560
BsuRI GGCC 3 cut(s) 1008, 1784, 1900
BtsIMutI CAGTG 1 cut(s) 981
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 1210, 1892
CaiI CAGNNNCTG 1 cut(s) 1467
CciI TCATGA 2 cut(s) 642, 1656
CfoI GCGC 3 cut(s) 688, 1453, 1838
Cfr13I GGNCC 4 cut(s) 961, 1006, 1007, 1328
Csp6I GTAC 2 cut(s) 1556, 1960
CviAII CATG 6 cut(s) 378, 643, 1142, 1657, 1676, 1811
CviQI GTAC 2 cut(s) 1556, 1960
DdeI CTNAG 7 cut(s) 105, 651, 927, 993, 1230, 1560, 1895
DpnI GATC 4 cut(s) 627, 671, 918, 1260
DpnII GATC 4 cut(s) 625, 669, 916, 1258
Eam1104I CTCTTC 5 cut(s) 556, 590, 615, 977, 1190
EarI CTCTTC 5 cut(s) 556, 590, 615, 977, 1190
Eco24I GRGCYC 4 cut(s) 999, 1010, 1138, 1307
Eco31I GGTCTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 2 cut(s) 961, 1328
Eco57I CTGAAG 2 cut(s) 15, 777
Eco81I CCTNAGG 3 cut(s) 651, 927, 1560
EcoO109I RGGNCCY 2 cut(s) 1006, 1007
EcoRV GATATC 1 cut(s) 1099
EcoT38I GRGCYC 4 cut(s) 999, 1010, 1138, 1307
FaeI CATG 6 cut(s) 381, 646, 1145, 1660, 1679, 1814
FalI AAGNNNNNCTT 4 cut(s) 719, 751, 1354, 1386
FaqI GGGAC 2 cut(s) 968, 1872
FatI CATG 6 cut(s) 377, 642, 1141, 1656, 1675, 1810
FbaI TGATCA 2 cut(s) 669, 1258
FblI GTMKAC 2 cut(s) 1404, 1511
FriOI GRGCYC 4 cut(s) 999, 1010, 1138, 1307
FspBI CTAG 2 cut(s) 1788, 1937
GlaI GCGC 3 cut(s) 687, 1452, 1837
GsaI CCCAGC 5 cut(s) 257, 302, 347, 377, 545
GsuI CTGGAG 3 cut(s) 387, 456, 1401
HaeIII GGCC 3 cut(s) 1008, 1784, 1900
HapII CCGG 3 cut(s) 841, 1627, 1745
HhaI GCGC 3 cut(s) 688, 1453, 1838
Hin1II CATG 6 cut(s) 381, 646, 1145, 1660, 1679, 1814
Hin6I GCGC 3 cut(s) 686, 1451, 1836
HinP1I GCGC 3 cut(s) 686, 1451, 1836
HindIII AAGCTT 2 cut(s) 1253, 1486
HinfI GANTC 9 cut(s) 646, 700, 1199, 1297, 1501, 1508, 1592, 1860, 1884
HpaII CCGG 3 cut(s) 841, 1627, 1745
HphI GGTGA 5 cut(s) 1299, 1416, 1504, 1510, 1651
Hpy166II GTNNAC 3 cut(s) 1405, 1512, 1823
Hpy8I GTNNAC 3 cut(s) 1405, 1512, 1823
HpyAV CCTTC 8 cut(s) 240, 255, 300, 327, 405, 1334, 1380, 1489
HpyCH4III ACNGT 3 cut(s) 1196, 1337, 1402
HpyCH4IV ACGT 1 cut(s) 119
HpyF3I CTNAG 7 cut(s) 105, 651, 927, 993, 1230, 1560, 1895
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 6 cut(s) 381, 646, 1145, 1660, 1679, 1814
HspAI GCGC 3 cut(s) 686, 1451, 1836
KpnI GGTACC 1 cut(s) 1559
Ksp22I TGATCA 2 cut(s) 669, 1258
Kzo9I GATC 4 cut(s) 625, 669, 916, 1258
LmnI GCTCC 1 cut(s) 1029
Lsp1109I GCAGC 8 cut(s) 124, 338, 1141, 1207, 1451, 1454, 1519, 1678
LweI GCATC 4 cut(s) 377, 1153, 1166, 1714
MaeI CTAG 2 cut(s) 1788, 1937
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 5 cut(s) 802, 1196, 1321, 1422, 1798
MalI GATC 4 cut(s) 627, 671, 918, 1260
MbiI CCGCTC 1 cut(s) 743
MboI GATC 4 cut(s) 625, 669, 916, 1258
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 5 cut(s) 515, 999, 1010, 1138, 1307
MluCI AATT 6 cut(s) 127, 681, 828, 1049, 1357, 1409
MlyI GAGTC 5 cut(s) 1193, 1517, 1601, 1854, 1878
MmeI TCCRAC 5 cut(s) 795, 1107, 1261, 1397, 1693
MseI TTAA 4 cut(s) 525, 1002, 1292, 1361
MspA1I CMGCKG 2 cut(s) 109, 1464
MspCI CTTAAG 1 cut(s) 1291
MspI CCGG 3 cut(s) 841, 1627, 1745
MspR9I CCNGG 1 cut(s) 1628
Mva1269I GAATGC 3 cut(s) 1212, 1437, 1535
MvnI CGCG 2 cut(s) 1038, 1836
NciI CCSGG 1 cut(s) 1628
NdeII GATC 4 cut(s) 625, 669, 916, 1258
NlaIII CATG 6 cut(s) 381, 646, 1145, 1660, 1679, 1814
NlaIV GGNNCC 4 cut(s) 627, 1008, 1009, 1557
NmuCI GTSAC 3 cut(s) 802, 1196, 1422
NspI RCATGY 1 cut(s) 381
PagI TCATGA 2 cut(s) 642, 1656
PaqCI CACCTGC 1 cut(s) 373
PctI GAATGC 3 cut(s) 1212, 1437, 1535
PfeI GAWTC 4 cut(s) 646, 700, 1297, 1501
PflFI GACNNNGTC 1 cut(s) 959
PfoI TCCNGGA 1 cut(s) 1626
PleI GAGTC 5 cut(s) 1193, 1516, 1600, 1854, 1878
PpsI GAGTC 5 cut(s) 1193, 1516, 1600, 1854, 1878
PsiI TTATAA 2 cut(s) 834, 861
PspFI CCCAGC 5 cut(s) 253, 298, 343, 373, 541
PspN4I GGNNCC 4 cut(s) 627, 1008, 1009, 1557
PspOMI GGGCCC 1 cut(s) 1006
PspPI GGNCC 4 cut(s) 961, 1006, 1007, 1328
PstI CTGCAG 2 cut(s) 328, 1279
PstNI CAGNNNCTG 1 cut(s) 1467
PsuI RGATCY 1 cut(s) 625
PsyI GACNNNGTC 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 1464
RsaI GTAC 2 cut(s) 1557, 1961
RsaNI GTAC 2 cut(s) 1556, 1960
SaqAI TTAA 4 cut(s) 525, 1002, 1292, 1361
Sau3AI GATC 4 cut(s) 625, 669, 916, 1258
Sau96I GGNCC 4 cut(s) 961, 1006, 1007, 1328
SchI GAGTC 5 cut(s) 1193, 1517, 1601, 1854, 1878
ScrFI CCNGG 1 cut(s) 1628
SduI GDGCHC 5 cut(s) 515, 999, 1010, 1138, 1307
SfaNI GCATC 4 cut(s) 377, 1153, 1166, 1714
SfcI CTRYAG 2 cut(s) 324, 1275
SinI GGWCC 2 cut(s) 961, 1328
SmlI CTYRAG 2 cut(s) 1291, 1862
SmoI CTYRAG 2 cut(s) 1291, 1862
SpeI ACTAGT 1 cut(s) 1787
Sse9I AATT 6 cut(s) 127, 681, 828, 1049, 1357, 1409
SsiI CCGC 3 cut(s) 109, 150, 741
SspI AATATT 2 cut(s) 39, 428
SspMI CTAG 2 cut(s) 1788, 1937
StyD4I CCNGG 1 cut(s) 1626
TaaI ACNGT 3 cut(s) 1196, 1337, 1402
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 660
TasI AATT 6 cut(s) 127, 681, 828, 1049, 1357, 1409
TauI GCSGC 2 cut(s) 112, 743
TfiI GAWTC 4 cut(s) 646, 700, 1297, 1501
Tru1I TTAA 4 cut(s) 525, 1002, 1292, 1361
Tru9I TTAA 4 cut(s) 525, 1002, 1292, 1361
TscAI CASTG 1 cut(s) 981
TseFI GTSAC 3 cut(s) 802, 1196, 1422
TseI GCWGC 8 cut(s) 112, 326, 1154, 1220, 1464, 1467, 1532, 1691
Tsp45I GTSAC 3 cut(s) 802, 1196, 1422
TspGWI ACGGA 1 cut(s) 1562
TspRI CASTG 1 cut(s) 981
Tth111I GACNNNGTC 1 cut(s) 959
Vha464I CTTAAG 1 cut(s) 1291
VpaK11BI GGWCC 2 cut(s) 961, 1328
XapI RAATTY 2 cut(s) 1049, 1357
XceI RCATGY 1 cut(s) 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XmiI GTMKAC 2 cut(s) 1404, 1511
XspI CTAG 2 cut(s) 1788, 1937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.