MD00G1152300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
33390598 .. 33393280
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1152300.v1.1.491

Sequence Viewer

Length: 2145 bp
ATGGCAGGAGCTTTGATCGGAGAGGCTTTTCTCTCTGCTTCCATCCGGACGCTATGCGACAAGGTTTCTTCTGGCGAGCTCGTGGACTTCTTCCGGCGGAAAAAACTTGACCATTCACTATTGGAGAAACTGAAGCTGACGTTGTTGACCCTTCATGCAGTGCTCAATGATGCAGAGGAGAAGCAGATTGTCAACCCTGCTGATCTACTGGATGAGATCGATGCTGAAGTTTTGCGCTCCAAGGTGGAAGCTGAATATCAAACTAAGAAAACCCAGGTGTGGAACTTCCTATCTACCTCTCTTAATCCTTTTTGTCAAGGCATGAATGGTAGGGTACAAGTGATATTTGAGAGACTAGAACACCTTGCGAAACAAAAAGATCTCCTTGGTCTTATAGGAGTTGTCAAGGGAACAGTTTCTCAAAGAACTCCCACAACATCCTTTGTTGAGCATGAATTTAGTGCTTGTGGAACGAAAGTGTGTGCATCCCTTGTGCACACTGGTCCTATTCACTACTTGAGACATTTGTCAGATGAAGATTGTTGGTTGTTACTCTCAAAACATGCATTTAGAAATGAAAATCCTAGTGCACATCCAGAGTTGGAAGAAATTGGTAAGCAAATTGCACACAAGTGTGACGGTCTTCCTTTAGCTGCAAAAGCACTTGGGGGTCTCTTAGGTTGTAATGTAGGTTACAAGGAATGGAGTCACATATTGAACAACAATCTTTGGGAGACATTACATGATAAAAGTGTTCTTCCATCTTTAAGATTGAGTTACCATTATCTCCCTACTTATTTAAAACAATGCTTTGCTTATCTCTCAATTTTTCCAAAAGACTATGAATTTGAAAAGGAAAATATAATTCAACTTTGGATGGCACTTGGTTTAATTCCACAAGCTGAGAGTGGTCAAGGATTGGAAGAGCTCGGTGGGAGATACTTTGATGAACTATTGTCACGATCACTACTTCAAAGATCATGGAAATCAAGTTTCACAATGCATGATCTCATTAACGACTTGGCTATGTCTGTGTCTGGAGAATTTTGTTTTAGGTTGGGTGAGGGACAACCACATGAAGTTCCTAAACGAGTTCGGCATTTGTCATATATGAGAGAAAGATTTGATACCGTAGCAAAATTTAAGCCATTGGATGAAATTAAGTGTTTGCGCACCTTGTTTCCCATGTCTTTAAGACCATACTATAAGTGGGATAAGAGCCTATATGTAAGCATAAAGGTTCTAGAGGATTTGTTACTAGCACAAAGATGTTTACGGGTGTTGTCATTGGCAAGATATAAAAATATAACTCAGTTACCTGATAACATTGGTAAACACTTAAGCTTGCGCTACATCGACCTCTCTTACACTGCAGTTAAAACGTTACCAAATACGATGTGTGAGCTCTACAATTTGCAAACTCTATTATTGTTAGGTTGTTCCTCTCTTGTTGAATTGCCTGCAGACATGAGGAAATTGATTAATTTGCGTCTTCTTGATATTAGAGAAACTTGTATAAAAGAGATGCCGGTGCAAATGGGTAGACTAAAAAGTTTGAGTACATTGACTGCTTTTGTGTTGGGGAAATCTACAAGGTCAAGTGGCATTGGAGAACTGGGGCAATTGTCGAACCTTCGAGGAAAACTATCTATCTTGAATCTGCAAAATGTAGTCAATCCTATGGATGCCTTGGGGGCCAATTTGAAGGATAAGAAAGACCTTCACGAAGTAGAGTTGGCATGGGGTCATGAGGATGCAAATGATTCCGTAAAAGAGAGACATGTACTTGAAAGCCTACAACCTTCCGTAAATTTGGTGAAGCTGACCATCAGATTTTATGGTGGAACTACGTTTCCGGATTGGTTGGGAGACTCTTCCTTCTCCAGCATACAAGTCATGCATCTCACTGATTGTAGTACTTGCTTGTCATTGCCACCAGTTGGAAGGTTACCCGCCCTCAAAGAGCTCTATATAGAAAGGATGAAATTTGTTGTGAGTATTGATGTTGAGTTCTACGGGGGTAATGGAGCTTCTCTAAGTCAACCATTTCAATCTCTCAGGAAGCTAGTGTTTAAAGAGATGCCGGAGTGGGAGGAATGGCTGTCAAGTCCAGAGGAAACTTACCTCATCGTCTTCCTTGCTTGA

Protein Analysis

715

Amino Acids

80.97

Weight (kDa)

6.74

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 276 - 342 6e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 421 - 692 9.2e-26 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 536 - 661 4.9e-37 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1172
AccB7I CCANNNNNTGG 1 cut(s) 1940
AccI GTMKAC 1 cut(s) 1543
AccIII TCCGGA 2 cut(s) 45, 1855
AciI CCGC 2 cut(s) 97, 1953
AclI AACGTT 1 cut(s) 1382
AcsI RAATTY 6 cut(s) 455, 845, 1043, 1139, 1810, 1985
AcuI CTGAAG 2 cut(s) 152, 246
AfaI GTAC 4 cut(s) 336, 1561, 1785, 1918
AfiI CCNNNNNNNGG 2 cut(s) 279, 1940
AflII CTTAAG 1 cut(s) 1339
AflIII ACRYGT 1 cut(s) 1780
AgsI TTSAA 9 cut(s) 718, 851, 869, 974, 1454, 1657, 1705, 1790, 2051
AjnI CCWGG 1 cut(s) 273
AleI CACNNNNGTG 2 cut(s) 631, 633
AloI GAACNNNNNNTCC 2 cut(s) 1837, 1869
Alw21I GWGCWC 7 cut(s) 81, 165, 498, 592, 930, 1407, 1968
Alw26I GTCTC 6 cut(s) 346, 514, 677, 728, 1771, 1863
Alw44I GTGCAC 2 cut(s) 494, 588
Aor13HI TCCGGA 2 cut(s) 45, 1855
AoxI GGCC 1 cut(s) 1695
ApaLI GTGCAC 2 cut(s) 494, 588
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 6 cut(s) 455, 845, 1043, 1139, 1810, 1985
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AseI ATTAAT 1 cut(s) 1482
Asp700I GAANNNNTTC 1 cut(s) 415
AspLEI GCGC 3 cut(s) 237, 1173, 1350
AspS9I GGNCC 2 cut(s) 503, 1695
AsuHPI GGTGA 2 cut(s) 1073, 1828
AvaII GGWCC 1 cut(s) 503
BaeGI GKGCMC 2 cut(s) 498, 592
BanII GRGCYC 4 cut(s) 81, 930, 1407, 1968
BarI GAAGNNNNNNTAC 2 cut(s) 2014, 2046
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 3 cut(s) 635, 1484, 2125
Bbv12I GWGCWC 7 cut(s) 81, 165, 498, 592, 930, 1407, 1968
BbvI GCAGC 1 cut(s) 640
BccI CCATC 4 cut(s) 50, 769, 871, 1835
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 6 cut(s) 346, 514, 677, 728, 1771, 1863
BfaI CTAG 5 cut(s) 356, 585, 1244, 1259, 2066
BfmI CTRYAG 2 cut(s) 1371, 1461
BfrI CTTAAG 1 cut(s) 1339
BglI GCCNNNNNGGC 1 cut(s) 1694
BglII AGATCT 1 cut(s) 379
BisI GCNGC 1 cut(s) 654
BlsI GCNGC 1 cut(s) 655
BmcAI AGTACT 1 cut(s) 1918
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 2 cut(s) 503, 1695
BmiI GGNNCC 1 cut(s) 1696
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 1625
BmsI GCATC 8 cut(s) 160, 211, 494, 1515, 1675, 1744, 1909, 2070
BmuI ACTGGG 1 cut(s) 1625
BoxI GACNNNNGTC 1 cut(s) 526
BpiI GAAGAC 3 cut(s) 635, 1484, 2125
BpmI CTGGAG 2 cut(s) 1059, 1867
BpuEI CTTGAG 1 cut(s) 538
Bsa29I ATCGAT 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 4 cut(s) 240, 273, 385, 1689
BsaWI WCCGGW 2 cut(s) 45, 1855
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 1940
Bse118I RCCGGY 1 cut(s) 1528
Bse1I ACTGG 4 cut(s) 213, 505, 1620, 1937
Bse3DI GCAATG 1 cut(s) 1928
BseAI TCCGGA 2 cut(s) 45, 1855
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 4 cut(s) 240, 273, 385, 1689
BseLI CCNNNNNNNGG 2 cut(s) 279, 1940
BseMI GCAATG 1 cut(s) 1928
BseMII CTCAG 3 cut(s) 894, 1325, 2071
BseNI ACTGG 4 cut(s) 213, 505, 1620, 1937
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 2 cut(s) 498, 592
BseXI GCAGC 1 cut(s) 640
BshFI GGCC 1 cut(s) 1697
BshVI ATCGAT 1 cut(s) 219
BsiHKAI GWGCWC 7 cut(s) 81, 165, 498, 592, 930, 1407, 1968
BsiSI CCGG 5 cut(s) 46, 94, 1529, 1856, 2084
BslFI GGGAC 1 cut(s) 1080
BslI CCNNNNNNNGG 2 cut(s) 279, 1940
BsmAI GTCTC 6 cut(s) 346, 514, 677, 728, 1771, 1863
BsmFI GGGAC 1 cut(s) 1080
BsnI GGCC 1 cut(s) 1697
Bso31I GGTCTC 1 cut(s) 677
Bsp1286I GDGCHC 7 cut(s) 81, 165, 498, 592, 930, 1407, 1968
Bsp13I TCCGGA 2 cut(s) 45, 1855
Bsp143I GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
BspACI CCGC 2 cut(s) 97, 1953
BspANI GGCC 1 cut(s) 1697
BspCNI CTCAG 3 cut(s) 895, 1324, 2070
BspDI ATCGAT 1 cut(s) 219
BspEI TCCGGA 2 cut(s) 45, 1855
BspHI TCATGA 1 cut(s) 1747
BspLI GGNNCC 1 cut(s) 1696
BspMAI CTGCAG 2 cut(s) 1375, 1465
BspQI GCTCTTC 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 1339
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 1928
BsrFI RCCGGY 1 cut(s) 1528
BsrI ACTGG 4 cut(s) 213, 505, 1620, 1937
BssAI RCCGGY 1 cut(s) 1528
BssECI CCNNGG 4 cut(s) 240, 273, 385, 1689
BssMI GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 3 cut(s) 240, 385, 1689
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 3 cut(s) 415, 641, 1132
Bst6I CTCTTC 2 cut(s) 918, 1879
BstAFI CTTAAG 1 cut(s) 1339
BstC8I GCNNGC 3 cut(s) 77, 1346, 1461
BstDEI CTNAG 6 cut(s) 264, 676, 903, 1311, 2036, 2057
BstEII GGTNACC 1 cut(s) 1947
BstHHI GCGC 3 cut(s) 237, 1173, 1350
BstKTI GATC 7 cut(s) 18, 205, 219, 382, 965, 980, 1009
BstMAI GTCTC 6 cut(s) 346, 514, 677, 728, 1771, 1863
BstMBI GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 659, 1694
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 566, 1784
BstPAI GACNNNNGTC 1 cut(s) 526
BstPI GGTNACC 1 cut(s) 1947
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 2 cut(s) 1371, 1461
BstSLI GKGCMC 2 cut(s) 498, 592
BstV1I GCAGC 1 cut(s) 640
BstV2I GAAGAC 3 cut(s) 635, 1484, 2125
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 1 cut(s) 1697
BsuTUI ATCGAT 1 cut(s) 219
BtsI GCAGTG 2 cut(s) 165, 1368
BtsIMutI CAGTG 4 cut(s) 165, 498, 1368, 1905
Cac8I GCNNGC 3 cut(s) 77, 1346, 1461
CciI TCATGA 1 cut(s) 1747
CfoI GCGC 3 cut(s) 237, 1173, 1350
Cfr10I RCCGGY 1 cut(s) 1528
Cfr13I GGNCC 2 cut(s) 503, 1695
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 2 cut(s) 58, 1478
Csp6I GTAC 4 cut(s) 335, 1560, 1784, 1917
CviQI GTAC 4 cut(s) 335, 1560, 1784, 1917
DdeI CTNAG 6 cut(s) 264, 676, 903, 1311, 2036, 2057
DpnI GATC 7 cut(s) 17, 204, 218, 381, 964, 979, 1008
DpnII GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
DraI TTTAAA 2 cut(s) 801, 2074
Eam1104I CTCTTC 2 cut(s) 918, 1879
EarI CTCTTC 2 cut(s) 918, 1879
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 4 cut(s) 79, 928, 1405, 1966
Eco130I CCWWGG 3 cut(s) 240, 385, 1689
Eco24I GRGCYC 4 cut(s) 81, 930, 1407, 1968
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 4 cut(s) 79, 928, 1405, 1966
Eco57I CTGAAG 2 cut(s) 152, 246
Eco91I GGTNACC 1 cut(s) 1947
EcoICRI GAGCTC 4 cut(s) 79, 928, 1405, 1966
EcoO65I GGTNACC 1 cut(s) 1947
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 3 cut(s) 240, 385, 1689
EcoT22I ATGCAT 3 cut(s) 568, 1005, 1902
EcoT38I GRGCYC 4 cut(s) 81, 930, 1407, 1968
ErhI CCWWGG 3 cut(s) 240, 385, 1689
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 1080
FauI CCCGC 1 cut(s) 1960
FblI GTMKAC 1 cut(s) 1543
Fnu4HI GCNGC 1 cut(s) 654
FriOI GRGCYC 4 cut(s) 81, 930, 1407, 1968
Fsp4HI GCNGC 1 cut(s) 654
FspBI CTAG 5 cut(s) 356, 585, 1244, 1259, 2066
FspI TGCGCA 1 cut(s) 1172
GlaI GCGC 3 cut(s) 236, 1172, 1349
GluI GCNGC 1 cut(s) 654
GsuI CTGGAG 2 cut(s) 1059, 1867
HaeIII GGCC 1 cut(s) 1697
HapII CCGG 5 cut(s) 46, 94, 1529, 1856, 2084
HgaI GACGC 2 cut(s) 58, 1478
HhaI GCGC 3 cut(s) 237, 1173, 1350
Hin6I GCGC 3 cut(s) 235, 1171, 1348
HinP1I GCGC 3 cut(s) 235, 1171, 1348
HincII GTYRAC 3 cut(s) 147, 193, 2042
HindII GTYRAC 3 cut(s) 147, 193, 2042
HindIII AAGCTT 1 cut(s) 1342
HinfI GANTC 4 cut(s) 706, 1657, 1763, 1871
HpaII CCGG 5 cut(s) 46, 94, 1529, 1856, 2084
HphI GGTGA 2 cut(s) 1073, 1828
Hpy166II GTNNAC 9 cut(s) 85, 147, 193, 496, 590, 1274, 1334, 1544, 2042
Hpy188I TCNGA 3 cut(s) 20, 532, 1832
Hpy8I GTNNAC 9 cut(s) 85, 147, 193, 496, 590, 1274, 1334, 1544, 2042
HpyAV CCTTC 7 cut(s) 161, 1643, 1699, 1730, 1812, 1888, 1938
HpyCH4III ACNGT 3 cut(s) 415, 641, 1132
HpyCH4IV ACGT 3 cut(s) 140, 1382, 1850
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 1694
HpyF3I CTNAG 6 cut(s) 264, 676, 903, 1311, 2036, 2057
HpySE526I ACGT 3 cut(s) 140, 1382, 1850
HspAI GCGC 3 cut(s) 235, 1171, 1348
Kpn2I TCCGGA 2 cut(s) 45, 1855
Kzo9I GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 3 cut(s) 8, 242, 2027
Lsp1109I GCAGC 1 cut(s) 640
LweI GCATC 8 cut(s) 160, 211, 494, 1515, 1675, 1744, 1909, 2070
MaeI CTAG 5 cut(s) 356, 585, 1244, 1259, 2066
MaeII ACGT 3 cut(s) 140, 1382, 1850
MalI GATC 7 cut(s) 17, 204, 218, 381, 964, 979, 1008
MboI GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
MfeI CAATTG 1 cut(s) 1622
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 7 cut(s) 81, 165, 498, 592, 930, 1407, 1968
MlyI GAGTC 2 cut(s) 715, 1865
MmeI TCCRAC 2 cut(s) 582, 1921
Mph1103I ATGCAT 3 cut(s) 568, 1005, 1902
MroI TCCGGA 2 cut(s) 45, 1855
MroXI GAANNNNTTC 1 cut(s) 415
MslI CAYNNNNRTG 4 cut(s) 631, 633, 1267, 1752
MspCI CTTAAG 1 cut(s) 1339
MspI CCGG 5 cut(s) 46, 94, 1529, 1856, 2084
MspR9I CCNGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 1622
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 659, 1694
NdeII GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
NlaIV GGNNCC 1 cut(s) 1696
NmuCI GTSAC 3 cut(s) 635, 707, 957
NsbI TGCGCA 1 cut(s) 1172
NsiI ATGCAT 3 cut(s) 568, 1005, 1902
NspI RCATGY 2 cut(s) 566, 1784
OliI CACNNNNGTG 2 cut(s) 631, 633
PagI TCATGA 1 cut(s) 1747
PciI ACATGT 1 cut(s) 1780
PciSI GCTCTTC 1 cut(s) 918
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 1657, 1763
PflMI CCANNNNNTGG 1 cut(s) 1940
PkrI GCNGC 1 cut(s) 655
PleI GAGTC 2 cut(s) 714, 1865
PpsI GAGTC 2 cut(s) 714, 1865
PscI ACATGT 1 cut(s) 1780
PshAI GACNNNNGTC 1 cut(s) 526
PshBI ATTAAT 1 cut(s) 1482
Psp124BI GAGCTC 4 cut(s) 81, 930, 1407, 1968
Psp1406I AACGTT 1 cut(s) 1382
Psp6I CCWGG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 1947
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 1696
PspPI GGNCC 2 cut(s) 503, 1695
PstI CTGCAG 2 cut(s) 1375, 1465
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 4 cut(s) 336, 1561, 1785, 1918
RsaNI GTAC 4 cut(s) 335, 1560, 1784, 1917
RseI CAYNNNNRTG 4 cut(s) 631, 633, 1267, 1752
SacI GAGCTC 4 cut(s) 81, 930, 1407, 1968
SapI GCTCTTC 1 cut(s) 918
SatI GCNGC 1 cut(s) 654
Sau3AI GATC 7 cut(s) 15, 202, 216, 379, 962, 977, 1006
Sau96I GGNCC 2 cut(s) 503, 1695
ScaI AGTACT 1 cut(s) 1918
SchI GAGTC 2 cut(s) 715, 1865
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 7 cut(s) 81, 165, 498, 592, 930, 1407, 1968
SfaNI GCATC 8 cut(s) 160, 211, 494, 1515, 1675, 1744, 1909, 2070
SfcI CTRYAG 2 cut(s) 1371, 1461
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 4 cut(s) 631, 633, 1267, 1752
SmlI CTYRAG 2 cut(s) 517, 1339
SmoI CTYRAG 2 cut(s) 517, 1339
SsiI CCGC 2 cut(s) 97, 1953
SspMI CTAG 5 cut(s) 356, 585, 1244, 1259, 2066
SstI GAGCTC 4 cut(s) 81, 930, 1407, 1968
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 3 cut(s) 240, 385, 1689
TaaI ACNGT 3 cut(s) 415, 641, 1132
TaiI ACGT 3 cut(s) 143, 1385, 1853
TaqI TCGA 4 cut(s) 219, 1356, 1628, 1636
TatI WGTACW 3 cut(s) 1559, 1783, 1916
TfiI GAWTC 2 cut(s) 1657, 1763
TscAI CASTG 4 cut(s) 165, 505, 1375, 1912
TseFI GTSAC 3 cut(s) 635, 707, 957
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 3 cut(s) 635, 707, 957
TspGWI ACGGA 2 cut(s) 1756, 1795
TspRI CASTG 4 cut(s) 165, 505, 1375, 1912
Van91I CCANNNNNTGG 1 cut(s) 1940
Vha464I CTTAAG 1 cut(s) 1339
VneI GTGCAC 2 cut(s) 494, 588
VpaK11BI GGWCC 1 cut(s) 503
VspI ATTAAT 1 cut(s) 1482
XapI RAATTY 6 cut(s) 455, 845, 1043, 1139, 1810, 1985
XbaI TCTAGA 1 cut(s) 1243
XceI RCATGY 2 cut(s) 566, 1784
XcmI CCANNNNNNNNNTGG 1 cut(s) 1206
XmiI GTMKAC 1 cut(s) 1543
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 5 cut(s) 356, 585, 1244, 1259, 2066
ZrmI AGTACT 1 cut(s) 1918
Zsp2I ATGCAT 3 cut(s) 568, 1005, 1902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.